Gcaud9386.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9386.t1
Unique NameGcaud9386.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length120
Homology
BLAST of Gcaud9386.t1 vs. uniprot
Match: A0A2V3IX03_9FLOR (Transcription initiation factor TFIID subunit 13 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX03_9FLOR)

HSP 1 Score: 184 bits (466), Expect = 4.560e-58
Identity = 96/115 (83.48%), Postives = 103/115 (89.57%), Query Frame = 0
Query:    3 PPAQTSGDEQTSRQLALPRIFSAELRQMMSGFGDSQNPRAESVKLMEEIVLEYISALNAKSTEVAMCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIKKATNLNAEEVSK 117
            P AQ SG E   RQL LPR+F  ELRQMMSGFGDSQNPRAESV+LMEEIVLEY++ALNAKS EVA+CNKRER DLMD+MYVIRRD RRLNRVRYLLEMKAEIKKATNLNAEE+SK
Sbjct:    4 PTAQGSGGECDGRQLVLPRVFYNELRQMMSGFGDSQNPRAESVRLMEEIVLEYMTALNAKSAEVALCNKRERPDLMDLMYVIRRDARRLNRVRYLLEMKAEIKKATNLNAEEISK 118          
BLAST of Gcaud9386.t1 vs. uniprot
Match: A0A7S0ZEC8_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZEC8_9RHOD)

HSP 1 Score: 110 bits (276), Expect = 5.470e-29
Identity = 54/92 (58.70%), Postives = 73/92 (79.35%), Query Frame = 0
Query:   19 LPRIFSAELRQMMSGFGDSQNPRAESVKLMEEIVLEYISALNAKSTEVAMCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIKKATNL 110
            LPRIF AELRQMM GFGD   P   +++LMEE++LEY+SAL +KS E+A   +R+R ++ DV +VIR+D RR+ RVRYLL+MKAEI++ TN+
Sbjct:   18 LPRIFGAELRQMMYGFGDVAKPLPATIELMEEMLLEYLSALISKSVEIAQSRRRDRPNISDVKFVIRKDRRRMQRVRYLLDMKAEIERVTNI 109          
BLAST of Gcaud9386.t1 vs. uniprot
Match: A0A5J4Z1N7_PORPP (Transcription initiation factor TFIID subunit 13 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z1N7_PORPP)

HSP 1 Score: 100 bits (248), Expect = 1.070e-24
Identity = 53/98 (54.08%), Postives = 71/98 (72.45%), Query Frame = 0
Query:   13 TSRQLALPRIFSAELRQMMSGFGDSQNPRAESVKLMEEIVLEYISALNAKSTEVAMCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIKKATNL 110
            T+ +  LPRIF+ ELR MM GFGD+  P   +V +MEEI+L+++  L +K+TEVA   KR+R D+ DV +VIRRD RR  RVRYLL+MKA I  AT++
Sbjct:   20 TTGRKTLPRIFAQELRGMMYGFGDAVRPSKAAVDMMEEILLDHLFNLVSKTTEVAHIRKRDRPDITDVKFVIRRDRRRTQRVRYLLQMKASIDGATSM 117          
BLAST of Gcaud9386.t1 vs. uniprot
Match: A0A1X6NKX1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKX1_PORUM)

HSP 1 Score: 95.5 bits (236), Expect = 3.920e-22
Identity = 49/104 (47.12%), Postives = 71/104 (68.27%), Query Frame = 0
Query:    5 AQTSGDEQTSRQLALPRIFSAELRQMMSGFGDSQNPRAESVKLMEEIVLEYISALNAKSTEVAMCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIKKAT 108
            A+ + +     +  +PRIF +ELR MM GFGDS  P   S++LMEE+V+EYI AL  K+ +VA   +R+R D+ DV + IR+D R++ RVRYLL+M+A I+  T
Sbjct:   12 AEAAAEGGAVERRTIPRIFVSELRGMMFGFGDSLTPSPASLQLMEEMVIEYIVALVTKTMDVAASRRRDRPDVTDVKFAIRKDDRKMQRVRYLLDMQAHIQTVT 115          
BLAST of Gcaud9386.t1 vs. uniprot
Match: A0A814E3C8_9BILA (Hypothetical protein n=2 Tax=Adineta TaxID=104781 RepID=A0A814E3C8_9BILA)

HSP 1 Score: 85.9 bits (211), Expect = 3.720e-19
Identity = 50/117 (42.74%), Postives = 74/117 (63.25%), Query Frame = 0
Query:    2 TPPAQTSGDEQTSRQLALPRIFSAELRQMMSGFGDSQNPRAESVKLMEEIVLEYISALNAKSTEVAMCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIKKATNLNAEEVSKG 118
            +P     GD QT +     R+FS ELR MM GFGD   P AESV+L+E++VL+YI+ +  K++E+   NK+ R  + D++Y++R D R+  RV+ LL M  E+K+A     +E SKG
Sbjct:   20 SPSGGVGGDNQTRK-----RLFSKELRNMMYGFGDDPQPYAESVELLEDLVLQYITDMTLKASEIGS-NKQGRIVVNDILYLLRHDARKYARVKELLSMNEELKRARKA-FDEPSKG 129          
BLAST of Gcaud9386.t1 vs. uniprot
Match: A0A815ZRY1_9BILA (Hypothetical protein n=5 Tax=Rotaria TaxID=231623 RepID=A0A815ZRY1_9BILA)

HSP 1 Score: 85.5 bits (210), Expect = 5.130e-19
Identity = 50/117 (42.74%), Postives = 74/117 (63.25%), Query Frame = 0
Query:    2 TPPAQTSGDEQTSRQLALPRIFSAELRQMMSGFGDSQNPRAESVKLMEEIVLEYISALNAKSTEVAMCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIKKATNLNAEEVSKG 118
            +P   TSGD    +     R+FS ELR MM GFGD   P AESV+L+E++V++YI+ +  K+TE+   NK+ R  + D++Y++R D R+  RV+ LL M  E+K+A     +E SKG
Sbjct:   19 SPSGGTSGDNHARK-----RLFSKELRNMMYGFGDDPQPYAESVELLEDLVVQYITDMTLKATEIGS-NKQGRMVVNDILYLLRHDPRKYARVKELLSMNEELKRARKA-FDEPSKG 128          
BLAST of Gcaud9386.t1 vs. uniprot
Match: UPI001425729C (transcription initiation factor TFIID subunit 13-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425729C)

HSP 1 Score: 84.3 bits (207), Expect = 1.490e-18
Identity = 46/106 (43.40%), Postives = 69/106 (65.09%), Query Frame = 0
Query:    2 TPPAQTSGDEQTSRQLALPRIFSAELRQMMSGFGDSQNPRAESVKLMEEIVLEYISALNAKSTEVAMCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIKKA 107
            T   + SG+  T       R+FS ELR MM GFGD QNP  ESV L++++V+E+I+ +  K+ EV    +R R  + D++++IR+D+R+ +RVR LL M  E+KKA
Sbjct:   20 TQETEPSGESSTEAPDKKKRMFSKELRCMMYGFGDDQNPYTESVDLLDDLVMEFITEMTHKAMEVG---RRGRVQVEDIVFLIRKDSRKYSRVRDLLTMNEELKKA 122          
BLAST of Gcaud9386.t1 vs. uniprot
Match: A0A817QC44_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817QC44_9BILA)

HSP 1 Score: 84.0 bits (206), Expect = 2.060e-18
Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = 0
Query:    7 TSGDEQTSRQLALPRIFSAELRQMMSGFGDSQNPRAESVKLMEEIVLEYISALNAKSTEVAMCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIKKATNLNAEEVSKG 118
            T+ D QT +     R+FS ELR MM GFGD   P AESV+L+E++VL+YI+ +  K+ E+   NK+ R  + D++Y++R D R+  RV+ LL M  E+K+A     +E SKG
Sbjct:   24 TNADNQTRK-----RLFSKELRNMMYGFGDDPQPYAESVELLEDLVLQYITDMTLKAAEIGS-NKQGRIVVNDILYLLRHDRRKYARVKELLSMNEELKRARKA-FDEPSKG 128          
BLAST of Gcaud9386.t1 vs. uniprot
Match: A0A817FW84_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817FW84_9BILA)

HSP 1 Score: 84.0 bits (206), Expect = 7.710e-18
Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = 0
Query:    7 TSGDEQTSRQLALPRIFSAELRQMMSGFGDSQNPRAESVKLMEEIVLEYISALNAKSTEVAMCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIKKATNLNAEEVSKG 118
            T+ D QT +     R+FS ELR MM GFGD   P AESV+L+E++VL+YI+ +  K+ E+   NK+ R  + D++Y++R D R+  RV+ LL M  E+K+A     +E SKG
Sbjct:   79 TNADNQTRK-----RLFSKELRNMMYGFGDDPQPYAESVELLEDLVLQYITDMTLKAAEIGS-NKQGRIVVNDILYLLRHDPRKYARVKELLSMNEELKRARKA-FDEPSKG 183          
BLAST of Gcaud9386.t1 vs. uniprot
Match: A0A1D2MQ07_ORCCI (Transcription initiation factor TFIID subunit 13 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MQ07_ORCCI)

HSP 1 Score: 82.8 bits (203), Expect = 8.510e-18
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 0
Query:   21 RIFSAELRQMMSGFGDSQNPRAESVKLMEEIVLEYISALNAKSTEVAMCNKRERADLMDVMYVIRRDTRRLNRVRYLLEMKAEIKKA 107
            R+FS ELR MM GFGD QNP  ESV  +E+IV+EYI+ +  K+ E     K  R  + D+M+++RRDTR+ +RV+ LL M  E+KKA
Sbjct:   49 RLFSKELRCMMYGFGDDQNPYTESVDFIEDIVIEYITEVTQKAMETG---KTGRVQVEDIMHLVRRDTRKYSRVKDLLTMNEELKKA 132          
The following BLAST results are available for this feature:
BLAST of Gcaud9386.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IX03_9FLOR4.560e-5883.48Transcription initiation factor TFIID subunit 13 n... [more]
A0A7S0ZEC8_9RHOD5.470e-2958.70Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z1N7_PORPP1.070e-2454.08Transcription initiation factor TFIID subunit 13 n... [more]
A0A1X6NKX1_PORUM3.920e-2247.12Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A814E3C8_9BILA3.720e-1942.74Hypothetical protein n=2 Tax=Adineta TaxID=104781 ... [more]
A0A815ZRY1_9BILA5.130e-1942.74Hypothetical protein n=5 Tax=Rotaria TaxID=231623 ... [more]
UPI001425729C1.490e-1843.40transcription initiation factor TFIID subunit 13-l... [more]
A0A817QC44_9BILA2.060e-1843.75Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A817FW84_9BILA7.710e-1843.75Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
A0A1D2MQ07_ORCCI8.510e-1850.57Transcription initiation factor TFIID subunit 13 n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003195Transcription initiation factor IID, subunit 13PFAMPF02269TFIID-18kDacoord: 22..108
e-value: 3.4E-22
score: 78.3
IPR003195Transcription initiation factor IID, subunit 13PANTHERPTHR11380TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATEDcoord: 7..109
IPR003195Transcription initiation factor IID, subunit 13CDDcd07978TAF13coord: 20..107
e-value: 1.17769E-28
score: 97.9863
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 22..66
e-value: 4.1E-16
score: 60.3
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 23..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_559_length_22118_cov_3.843737contigNODE_559_length_22118_cov_3.843737:913..1447 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9386.t1Gcaud9386.t1Gracilaria caudata M_176_S67 malemRNANODE_559_length_22118_cov_3.843737 913..1447 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9386.t1 ID=Gcaud9386.t1|Name=Gcaud9386.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=120bp
MTPPAQTSGDEQTSRQLALPRIFSAELRQMMSGFGDSQNPRAESVKLMEE
IVLEYISALNAKSTEVAMCNKRERADLMDVMYVIRRDTRRLNRVRYLLEM
KAEIKKATNLNAEEVSKGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003195TFIID_TAF13
IPR009072Histone-fold