Gcaud9384.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9384.t1
Unique NameGcaud9384.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length447
Homology
BLAST of Gcaud9384.t1 vs. uniprot
Match: PSBB_PORPU (Photosystem II CP47 reaction center protein n=204 Tax=Eukaryota TaxID=2759 RepID=PSBB_PORPU)

HSP 1 Score: 898 bits (2321), Expect = 0.000e+0
Identity = 418/447 (93.51%), Postives = 438/447 (97.99%), Query Frame = 0
Query:    1 MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESISNPGLWSFEGVAITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLCFGFGAFHATGLFGPGIWISDGYGITGKVQPVAPAWGPDGFNPFNPGGVASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGGTPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIFQDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGKVFTDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP 447
            MGLPWYRVHTVVLNDPGRLI+VHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGES+SNPGLWS EGVA+THIVLSGMLFLA+IWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLCFGFGAFH TGLFGPG+W+SDGYG+TGKV PVAPAWGP+GFNPFNPGGVASHHIAAGTVGILAG+FHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAF+TCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIE+RVEN++ +G  P EAWS+IPDKLAFYDYIGNNPAKGGLFRAGPM+KGDG+AEAWLGHP+FQDKEGREL+VRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVT SFYGGKLNG+VF DAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP
Sbjct:    1 MGLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESVSNPGLWSLEGVALTHIVLSGMLFLAAIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLCFGFGAFHVTGLFGPGMWVSDGYGVTGKVLPVAPAWGPEGFNPFNPGGVASHHIAAGTVGILAGVFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAFITCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIEKRVENAIADGAAPSEAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGVAEAWLGHPVFQDKEGRELSVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTASFYGGKLNGQVFNDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP 447          
BLAST of Gcaud9384.t1 vs. uniprot
Match: A0A1C9CAR4_9FLOR (Photosystem II CP47 reaction center protein n=16 Tax=Florideophyceae TaxID=2806 RepID=A0A1C9CAR4_9FLOR)

HSP 1 Score: 891 bits (2303), Expect = 0.000e+0
Identity = 419/447 (93.74%), Postives = 433/447 (96.87%), Query Frame = 0
Query:    1 MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESISNPGLWSFEGVAITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLCFGFGAFHATGLFGPGIWISDGYGITGKVQPVAPAWGPDGFNPFNPGGVASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGGTPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIFQDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGKVFTDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP 447
            MGLPWYRVHTVVLNDPGRLISVHLMHTALV+GWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESISNPGLWSFEGVAITHIVLSG+LFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLL+SLLCF FGAFH TGLFGPGIWISD YGITGKVQ VAP WGPDGFNPFNPGG+ASHHIAAGTVGILAG+FHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAF+TCGTMWYGSATTP+ELFGPTRYQWDSGYFQQEIE+RVE+SL EG    EAWS+IPDKLAFYDYIGNNPAKGGLFR+GPM+KGDGIAE WLGHPIFQDKEGREL VRRMPAFFETFPVIL+DKDGIIRADIPFRRAESKYSIEQVGVT SFYGGKLNGK F+DAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP
Sbjct:    1 MGLPWYRVHTVVLNDPGRLISVHLMHTALVSGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESISNPGLWSFEGVAITHIVLSGLLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLASLLCFSFGAFHITGLFGPGIWISDAYGITGKVQAVAPEWGPDGFNPFNPGGIASHHIAAGTVGILAGIFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAFITCGTMWYGSATTPLELFGPTRYQWDSGYFQQEIEKRVESSLGEGSNQFEAWSRIPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAETWLGHPIFQDKEGRELNVRRMPAFFETFPVILIDKDGIIRADIPFRRAESKYSIEQVGVTASFYGGKLNGKTFSDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP 447          
BLAST of Gcaud9384.t1 vs. uniprot
Match: Q4G3C5_EMIHU (Photosystem II CP47 reaction center protein n=20 Tax=Eukaryota TaxID=2759 RepID=Q4G3C5_EMIHU)

HSP 1 Score: 871 bits (2250), Expect = 0.000e+0
Identity = 404/447 (90.38%), Postives = 433/447 (96.87%), Query Frame = 0
Query:    1 MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESISNPGLWSFEGVAITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLCFGFGAFHATGLFGPGIWISDGYGITGKVQPVAPAWGPDGFNPFNPGGVASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGGTPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIFQDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGKVFTDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP 447
            M LPWYRVHTVVLNDPGRLI+VHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGES+SNPG+WSFEGVA+THIVLSGM FLA+IWHWVYWDLELFRDPRTGEPALDLPKIFGIHL LSSLLCFGFGAFH TG FGPGIW+SD YGITG+VQ VAPAWG +GFNPFNPGG+ASHHIAAG +G+LAG+FHLT+RPPQRLYRALRMGNIETVLSSSISAVFF+AF+T GTMWYG+ATTPIELFGPTRYQWDSGYFQQEIERRVE+SL+EG +  +AWS+IPDKLAFYDYIGNNPAKGGLFRAGPM+KGDGIAEAWLGHP+FQDKEGRELTVRRMPAFFETFPVILVDKDGI+RADIPFRRAESKYSIEQVGV+ +FYGGKLNG+VFTDAP+VKKYARK+QLGEVFEFDRTTLESDGVFRSSP
Sbjct:    1 MALPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESVSNPGIWSFEGVALTHIVLSGMCFLAAIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLFLSSLLCFGFGAFHVTGTFGPGIWVSDAYGITGRVQAVAPAWGAEGFNPFNPGGIASHHIAAGILGLLAGVFHLTIRPPQRLYRALRMGNIETVLSSSISAVFFAAFITSGTMWYGAATTPIELFGPTRYQWDSGYFQQEIERRVESSLSEGLSLSQAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPVFQDKEGRELTVRRMPAFFETFPVILVDKDGIVRADIPFRRAESKYSIEQVGVSCNFYGGKLNGQVFTDAPTVKKYARKSQLGEVFEFDRTTLESDGVFRSSP 447          
BLAST of Gcaud9384.t1 vs. uniprot
Match: PSBB_GUITH (Photosystem II CP47 reaction center protein n=12 Tax=Cryptophyceae TaxID=3027 RepID=PSBB_GUITH)

HSP 1 Score: 866 bits (2237), Expect = 4.870e-316
Identity = 399/447 (89.26%), Postives = 428/447 (95.75%), Query Frame = 0
Query:    1 MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESISNPGLWSFEGVAITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLCFGFGAFHATGLFGPGIWISDGYGITGKVQPVAPAWGPDGFNPFNPGGVASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGGTPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIFQDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGKVFTDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP 447
            MGLPWYRVHTVVLNDPGRLI+VHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGM+VMPFMAR+GVTDSWGGWSITGES+SNPG WSFEGVA+ HI LSG+LFLA++WHWVYWDLELFRDPRTG PALDLPKIFGIHL+L+ LLCFGFGAFH TG +GPGIW+SD YGITGKVQPVAP WGP+GFNPFNP GVASHHIAAG +G +AG+FH+ VRPPQRLYRALRMGNIETVLSSSI+AVFF+AF+T GTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEG +  EAWS+IPDKLAFYDY+GNNPAKGGLFRAGPM+KGDGIAEAWLGHP+FQDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYS+EQVGVTVSFYGGKLNG+ +TDAP+VKKYARKAQLGEV EFDRTTLESDGVFRSSP
Sbjct:    1 MGLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMYVMPFMARIGVTDSWGGWSITGESVSNPGFWSFEGVALAHIGLSGLLFLAAVWHWVYWDLELFRDPRTGNPALDLPKIFGIHLVLAGLLCFGFGAFHVTGAWGPGIWVSDAYGITGKVQPVAPTWGPEGFNPFNPSGVASHHIAAGILGFIAGIFHIAVRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITTGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGLSLSEAWSRIPDKLAFYDYVGNNPAKGGLFRAGPMNKGDGIAEAWLGHPVFQDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSVEQVGVTVSFYGGKLNGQTYTDAPTVKKYARKAQLGEVLEFDRTTLESDGVFRSSP 447          
BLAST of Gcaud9384.t1 vs. uniprot
Match: B7T1V1_VAULI (Photosystem II CP47 reaction center protein n=11 Tax=Ochrophyta TaxID=2696291 RepID=B7T1V1_VAULI)

HSP 1 Score: 864 bits (2233), Expect = 1.950e-315
Identity = 404/447 (90.38%), Postives = 426/447 (95.30%), Query Frame = 0
Query:    1 MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESISNPGLWSFEGVAITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLCFGFGAFHATGLFGPGIWISDGYGITGKVQPVAPAWGPDGFNPFNPGGVASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGGTPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIFQDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGKVFTDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP 447
            MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFM RLGVTDSWGGWSITGES+SNPG+WSFEGVA+THIVLSG+ FLA+IWHWVYWDLELFRD RTGEP LDLPKIFGIHL LS LLCFGFGAFH TGLFGPGIW+SD YGITGK+QPVAPAWGP+GFNPFNPGG+ASHHIAAGT GILAG+FHLT+RPPQRLYRALR+GNIETVLSSSISAVFF+AF+T GTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVE SLNEG +  E W+ IPDKLAFYDYIGNNPAKGGLFRAGPM+KGDGIAEAWLGHPIF+DKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAES YSIEQVGV VSFYGGKLNG+ F DA +VKK+ARKAQLGEVFEFDRT+LESDGVFRSSP
Sbjct:    1 MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMTRLGVTDSWGGWSITGESVSNPGIWSFEGVALTHIVLSGLCFLAAIWHWVYWDLELFRDLRTGEPTLDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGITGKIQPVAPAWGPEGFNPFNPGGIASHHIAAGTFGILAGVFHLTIRPPQRLYRALRIGNIETVLSSSISAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVELSLNEGLSESETWANIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFRDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESXYSIEQVGVNVSFYGGKLNGQSFKDAQTVKKFARKAQLGEVFEFDRTSLESDGVFRSSP 447          
BLAST of Gcaud9384.t1 vs. uniprot
Match: A0A1C9CDW4_PORSO (Photosystem II CP47 reaction center protein n=1 Tax=Porphyridium sordidum TaxID=28024 RepID=A0A1C9CDW4_PORSO)

HSP 1 Score: 862 bits (2227), Expect = 1.510e-314
Identity = 400/439 (91.12%), Postives = 429/439 (97.72%), Query Frame = 0
Query:    9 HTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESISNPGLWSFEGVAITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLCFGFGAFHATGLFGPGIWISDGYGITGKVQPVAPAWGPDGFNPFNPGGVASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGGTPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIFQDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGKVFTDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP 447
            HTVVLNDPGRLI+VHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFM RLGVTDSWGGWSITGES+SNPG+WSFEGVA+THIVLSG+LFLA+IWHW+YWDLELFRDPRTGEPALDLPKIFGIHLLL+S+LCFGFGAFH TGLFGPGIW+SD YGITGKVQPVAPAWGP+GFNPFNPGGVASHHIAAGTVGILAG+FHL++RPPQRLYRALRMGNIETVLSSSI+AVFF+AF+T GTMWYGSATTPIELFGPTRYQWDSGYFQQEIER+VENSL+EG +  +AWS+IPDKLAFYDYIGNNPAKGGLFR+GPMDKGDGIAEAWLGHP+F+DKEGRELTVRRMPAFFETFPVILVD+DGIIRADIPFRRAESKYSIEQVGVT+ FYGGKLNG+ FTDAP+VKKYARKAQLGEVFEFDR TLESDGVFRSSP
Sbjct:    8 HTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMTRLGVTDSWGGWSITGESVSNPGIWSFEGVALTHIVLSGLLFLAAIWHWIYWDLELFRDPRTGEPALDLPKIFGIHLLLASILCFGFGAFHVTGLFGPGIWVSDAYGITGKVQPVAPAWGPEGFNPFNPGGVASHHIAAGTVGILAGVFHLSIRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERQVENSLSEGLSLNDAWSRIPDKLAFYDYIGNNPAKGGLFRSGPMDKGDGIAEAWLGHPVFKDKEGRELTVRRMPAFFETFPVILVDQDGIIRADIPFRRAESKYSIEQVGVTIDFYGGKLNGQSFTDAPTVKKYARKAQLGEVFEFDRITLESDGVFRSSP 446          
BLAST of Gcaud9384.t1 vs. uniprot
Match: PSBB_TRICV (Photosystem II CP47 reaction center protein n=91 Tax=Sar TaxID=2698737 RepID=PSBB_TRICV)

HSP 1 Score: 861 bits (2225), Expect = 3.160e-314
Identity = 398/447 (89.04%), Postives = 427/447 (95.53%), Query Frame = 0
Query:    1 MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESISNPGLWSFEGVAITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLCFGFGAFHATGLFGPGIWISDGYGITGKVQPVAPAWGPDGFNPFNPGGVASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGGTPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIFQDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGKVFTDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP 447
            M LPWYRVHTVVLNDPGRLI+VHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFM RLG+TDSWGGWSITGES+SNPG+WSFEGVA++HI+LSGM FLA+IWHWVYWDLELFRDPRTGEPALDLPKIFGIHL LS LLCFGFGAFH TGLFGPGIW+SD YG+TGKVQPVAPAWG DGFNPFNPGG+A+HHIAAG  GI AG+FHLTVRPPQRLYRALRMGNIETVLSSSI+AVFF+AFVT GTMWYG+A TPIELFGPTRYQWDSGYFQQEIER+VE S++EG +  +AWS+IPDKLAFYDYIGNNPAKGGLFRAGPM+KGDGIAEAWLGHPIF+DK+GRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTV FYGGKLNG+ F DAP+VKK+ARKAQLGEVFEFDRT+LESDGVFRSSP
Sbjct:    1 MALPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMTRLGITDSWGGWSITGESVSNPGIWSFEGVALSHIILSGMCFLAAIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGVTGKVQPVAPAWGADGFNPFNPGGIAAHHIAAGIFGIFAGIFHLTVRPPQRLYRALRMGNIETVLSSSIAAVFFAAFVTSGTMWYGAAATPIELFGPTRYQWDSGYFQQEIERQVETSVSEGLSESQAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFRDKDGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVDFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFRSSP 447          
BLAST of Gcaud9384.t1 vs. uniprot
Match: A0A3G2QYB8_9STRA (Photosystem II CP47 reaction center protein n=14 Tax=Ochrophyta TaxID=2696291 RepID=A0A3G2QYB8_9STRA)

HSP 1 Score: 855 bits (2210), Expect = 6.090e-312
Identity = 393/447 (87.92%), Postives = 432/447 (96.64%), Query Frame = 0
Query:    1 MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESISNPGLWSFEGVAITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLCFGFGAFHATGLFGPGIWISDGYGITGKVQPVAPAWGPDGFNPFNPGGVASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGGTPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIFQDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGKVFTDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP 447
            M LPWYRVHTVVLNDPGRLI+VHLMHTALV+GWAGSMALYELA+FDPSDPVLNPMWRQGMFVMPFMARLG+T+SWGGW+ITGES + PG+WSFEGVA+THIVLSG+LFLA+IWHWVYWDL+LF+DPRTGEPALDLPKIFGIHLLLS  LCFGFGAFH TGLFGPGIW+SD +G+TG+VQPVAP+WGP+GFNPFNPGG+ASHHIAAGT+GI+AG+FHLTVRPPQRLYRALRMGNIETVLSSSISAVF++AFVT GTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVE S+++  +  +AWS+IPDKLAFYDYIGNNPAKGGLFR+GPM+KGDGIAEAWLGHPIF+D+EGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNG+ F DAP+VKK+ARKAQLGEVFEFDRT+LESDGVFRSSP
Sbjct:    1 MALPWYRVHTVVLNDPGRLIAVHLMHTALVSGWAGSMALYELAIFDPSDPVLNPMWRQGMFVMPFMARLGITESWGGWTITGESSTTPGIWSFEGVALTHIVLSGLLFLAAIWHWVYWDLDLFQDPRTGEPALDLPKIFGIHLLLSGFLCFGFGAFHVTGLFGPGIWVSDAFGLTGRVQPVAPSWGPEGFNPFNPGGIASHHIAAGTLGIIAGIFHLTVRPPQRLYRALRMGNIETVLSSSISAVFWAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSVSQNLSETDAWSQIPDKLAFYDYIGNNPAKGGLFRSGPMNKGDGIAEAWLGHPIFRDREGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFRSSP 447          
BLAST of Gcaud9384.t1 vs. uniprot
Match: Q85FZ5_CYAM1 (Photosystem II CP47 reaction center protein n=4 Tax=Cyanidiaceae TaxID=265316 RepID=Q85FZ5_CYAM1)

HSP 1 Score: 855 bits (2209), Expect = 8.650e-312
Identity = 396/447 (88.59%), Postives = 428/447 (95.75%), Query Frame = 0
Query:    1 MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESISNPGLWSFEGVAITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLCFGFGAFHATGLFGPGIWISDGYGITGKVQPVAPAWGPDGFNPFNPGGVASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGGTPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIFQDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGKVFTDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP 447
            M LPWYRVH VVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWS+TGE++ NPGLWSFEGVA+THIVLSG+LFLASIWHWVYWDLELFRD RTGEPALDLPKIFGIHLLL+SLLCFGFGAFH TG+FGPGIW+SD YG+TGKVQPVAPAWGP+GFNP+NPGGVASHHIAAGTVGILAG+FHL VRPPQRLYRALRMGNIETVLSSSI+AVFF+AFV  GTMWYGSATTPIELFGPTRYQWDSGYFQQE+ERRV+ ++++G +  EAWSKIPDKLAFYDYIGNNPAKGGLFRAGPM+KGDGIA+AWLGH +FQDK+GRELTVRRMPAFFETFPVILVDKDGI+RADIPFRRAESKYSIEQVGVT  FYGGK NG+ FTDA SVK+YARKAQLGEVFEFDR++L+SDGVFR+SP
Sbjct:    1 MALPWYRVHIVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSVTGENVVNPGLWSFEGVALTHIVLSGLLFLASIWHWVYWDLELFRDARTGEPALDLPKIFGIHLLLASLLCFGFGAFHVTGVFGPGIWVSDAYGLTGKVQPVAPAWGPEGFNPYNPGGVASHHIAAGTVGILAGVFHLNVRPPQRLYRALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSGYFQQEMERRVQANVSQGASLAEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAQAWLGHAVFQDKQGRELTVRRMPAFFETFPVILVDKDGIVRADIPFRRAESKYSIEQVGVTCQFYGGKFNGQKFTDAASVKRYARKAQLGEVFEFDRSSLDSDGVFRTSP 447          
BLAST of Gcaud9384.t1 vs. uniprot
Match: PSBB_CYACA (Photosystem II CP47 reaction center protein n=1 Tax=Cyanidium caldarium TaxID=2771 RepID=PSBB_CYACA)

HSP 1 Score: 849 bits (2194), Expect = 1.670e-309
Identity = 396/447 (88.59%), Postives = 423/447 (94.63%), Query Frame = 0
Query:    1 MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESISNPGLWSFEGVAITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLCFGFGAFHATGLFGPGIWISDGYGITGKVQPVAPAWGPDGFNPFNPGGVASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGGTPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIFQDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSFYGGKLNGKVFTDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP 447
            M LPWYRVHTVVLNDPGRLISVHLMHTALV+GWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGES+SNPGLWSFEGVA+THIVLSG+LFLASIWHWVYWDL+LFRDPRT EPALDLPK+FGIHL+LSSLLCFGFGAFH TGLFGPGIWISD YG+TG++Q VAPAWGP+GFNPFNPGG+ASHHIAAGTVGILAG+FHL VRPPQRLYRALRMGNIETVLSSSI+AVFF++FV  GTMWYG+A+TPIELFGPTRYQWDSGYFQQEIE+RVE SL+ G +  EAWS IPDKLAFYDYIGNNPAKGGLFRAGPM+KGDGIAEAWLGHP+FQDKEG EL VRRMPAFFE FP+ILVDKDGIIRADIPFRRAESKYSIEQVGVT SFYGGKLN + F DA +VKKYARKAQ GEVFEFDRT L+SDGVFRSSP
Sbjct:    1 MALPWYRVHTVVLNDPGRLISVHLMHTALVSGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESVSNPGLWSFEGVALTHIVLSGLLFLASIWHWVYWDLDLFRDPRTLEPALDLPKVFGIHLVLSSLLCFGFGAFHVTGLFGPGIWISDAYGLTGRIQSVAPAWGPEGFNPFNPGGIASHHIAAGTVGILAGVFHLNVRPPQRLYRALRMGNIETVLSSSIAAVFFASFVVSGTMWYGAASTPIELFGPTRYQWDSGYFQQEIEKRVEESLSNGLSLPEAWSNIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPVFQDKEGHELIVRRMPAFFENFPIILVDKDGIIRADIPFRRAESKYSIEQVGVTCSFYGGKLNNQSFKDASTVKKYARKAQFGEVFEFDRTILDSDGVFRSSP 447          
The following BLAST results are available for this feature:
BLAST of Gcaud9384.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBB_PORPU0.000e+093.51Photosystem II CP47 reaction center protein n=204 ... [more]
A0A1C9CAR4_9FLOR0.000e+093.74Photosystem II CP47 reaction center protein n=16 T... [more]
Q4G3C5_EMIHU0.000e+090.38Photosystem II CP47 reaction center protein n=20 T... [more]
PSBB_GUITH4.870e-31689.26Photosystem II CP47 reaction center protein n=12 T... [more]
B7T1V1_VAULI1.950e-31590.38Photosystem II CP47 reaction center protein n=11 T... [more]
A0A1C9CDW4_PORSO1.510e-31491.12Photosystem II CP47 reaction center protein n=1 Ta... [more]
PSBB_TRICV3.160e-31489.04Photosystem II CP47 reaction center protein n=91 T... [more]
A0A3G2QYB8_9STRA6.090e-31287.92Photosystem II CP47 reaction center protein n=14 T... [more]
Q85FZ5_CYAM18.650e-31288.59Photosystem II CP47 reaction center protein n=4 Ta... [more]
PSBB_CYACA1.670e-30988.59Photosystem II CP47 reaction center protein n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 1..447
e-value: 3.5E-236
score: 784.8
IPR000932Photosystem antenna protein-likePANTHERPTHR33180PHOTOSYSTEM II CP43 REACTION CENTER PROTEINcoord: 1..447
IPR017486Photosystem II CP47 reaction centre proteinTIGRFAMTIGR03039TIGR03039coord: 1..447
e-value: 6.4E-269
score: 890.6
NoneNo IPR availableGENE3D3.10.680.10Photosystem II CP47 reaction center proteincoord: 272..444
e-value: 1.3E-98
score: 329.6
NoneNo IPR availablePANTHERPTHR33180:SF14PHOTOSYSTEM II CP47 REACTION CENTER PROTEINcoord: 1..447
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 218..236
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 259..447
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 119..138
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..40
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 98..118
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..78
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..97
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 199..217
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 139..162
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 41..60
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 237..258
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 163..198
NoneNo IPR availableTMHMMTMhelixcoord: 96..118
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 237..259
NoneNo IPR availableTMHMMTMhelixcoord: 139..161
NoneNo IPR availableTMHMMTMhelixcoord: 198..217
IPR036001Photosystem antenna protein-like superfamilySUPERFAMILY161077Photosystem II antenna protein-likecoord: 2..447

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1327_length_11363_cov_185.906317contigNODE_1327_length_11363_cov_185.906317:10024..11363 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9384.t1Gcaud9384.t1Gracilaria caudata M_176_S67 malemRNANODE_1327_length_11363_cov_185.906317 10024..11363 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9384.t1 ID=Gcaud9384.t1|Name=Gcaud9384.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=447bp
MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAVFDPSDP
VLNPMWRQGMFVMPFMARLGVTDSWGGWSITGESISNPGLWSFEGVAITH
IVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLC
FGFGAFHATGLFGPGIWISDGYGITGKVQPVAPAWGPDGFNPFNPGGVAS
HHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAF
VTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGGTPEE
AWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIFQDKE
GRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVS
FYGGKLNGKVFTDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSSP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000932PS_antenna-like
IPR017486PSII_PsbB
IPR036001PS_II_antenna-like_sf