Gcaud9358.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9358.t1
Unique NameGcaud9358.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length530
Homology
BLAST of Gcaud9358.t1 vs. uniprot
Match: A0A2V3INU1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INU1_9FLOR)

HSP 1 Score: 515 bits (1326), Expect = 1.110e-175
Identity = 271/519 (52.22%), Postives = 362/519 (69.75%), Query Frame = 0
Query:   11 PSTLTVHVAIGQFFLIIFLITELVIRPLHEIFKDDMVHCAARRSVTRGNAVQIRSAPFVLRALGIHTLITGRS----LGFVITQTIRIALIILLIAATALFDRKIESDKVAVVSTFSTTSWEGDIVNVSEGRAVLMSPVPLFGINEQDAGNITAFTSTGSNSSSHYAVREDANLAAQFISSCVRQLNDSYTVVYTGAVIQSDDVQKVRCLDGTNGSENRTAATFFSNPAAVSQPSVQTVTLSRLRNENGISSDRVSGVFGADVLDENGVTYSGYVAVTKNSHSDSNVVWSMYGMVRSTGPFVYRVNIRLYLSGETDPEIPPCFDENPSIRYVGQWSFDGAQYTCPDGISRPTERMENEELQSISLEMFSGSDEVQFEENADLLAWLLETDFALFAAAKTFALEMRTRVRSDRMFYSLYEGETIKVTTGKTEDVVTLGLWETWLLLGAIVALLLSIVLSSAWKVYQRWRLGIKSDVVSLESVADMYASEVRKCAYPGEVLLQVGLVKGADGGAHLGIVEK 525
            PS  ++   IGQF LI+ L+ ELV+RPL E+FKD  V+CAAR  V+ GNA+QIRSAP +LRA+GI   ++          + +Q  RI L++ LI A A+F+R ++  ++A VSTFST+S   D ++V  G+ +LMSP P+FG+ EQ+A +I  F S+G+NSSS Y VRE  NLAAQ+ISSCVRQLNDSYTVVY GAV+Q++  Q V CLDGT GSENRTAA FFS+   V+  +V+++TLSRL NE G+SSD ++GVF AD++DEN   Y GY AVTK SH DSNVVWS+Y +VR    FV+RV++RLY SG+T  +  PCF ENPS++Y G W+FD  +Y CPDG  RP  R E ++LQ++SLEMF  S++ +   N DLLAWL+ETD+A F AA+ F  E+R+RVRSDRMFYS++EGE + V  G  ++VV +G  +T + L AI  LLL   +SS     Q  RL + S++VS ++VA MY SE    A   +V L VGL+  A    HLG+V++
Sbjct:   14 PSVYSLQTNIGQFLLILLLVNELVLRPLQELFKDHWVYCAARSVVSGGNAIQIRSAPRLLRAIGIENFVSSPESRPRCRLLASQMFRIVLLVFLIIAAAIFERTVDQKRLATVSTFSTSSPANDSISVKTGQTMLMSPFPVFGLTEQEARDIAPFQSSGTNSSSKYIVREHPNLAAQYISSCVRQLNDSYTVVYVGAVVQAEGRQTVMCLDGTGGSENRTAARFFSSSPGVTGVNVKSITLSRLSNEKGLSSDSITGVFAADIVDENDKEYKGYAAVTKRSHYDSNVVWSVYALVRRDDSFVWRVSVRLYKSGQTVCDARPCFGENPSLKYTGTWTFDDDEYICPDGEPRPFIRKEKDKLQTVSLEMFPASNQNESANNGDLLAWLIETDYARFVAAEVFEWELRSRVRSDRMFYSIHEGERLAVADGGVKEVVVMGRTQTVVFLTAIATLLLFTFVSSISNCVQSRRLNLGSEIVSFQAVAGMYRSESGSKAPTRDVALNVGLIDTAHDTQHLGLVDE 532          
The following BLAST results are available for this feature:
BLAST of Gcaud9358.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3INU1_9FLOR1.110e-17552.22Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 448..470
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 14..35
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 108..447
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..107
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 36..83
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 471..529
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..13
NoneNo IPR availableTMHMMTMhelixcoord: 84..106
NoneNo IPR availableTMHMMTMhelixcoord: 445..467
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_943_length_15884_cov_4.443994contigNODE_943_length_15884_cov_4.443994:902..2491 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9358.t1Gcaud9358.t1Gracilaria caudata M_176_S67 malemRNANODE_943_length_15884_cov_4.443994 902..2491 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9358.t1 ID=Gcaud9358.t1|Name=Gcaud9358.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=530bp
MDVTSATSASPSTLTVHVAIGQFFLIIFLITELVIRPLHEIFKDDMVHCA
ARRSVTRGNAVQIRSAPFVLRALGIHTLITGRSLGFVITQTIRIALIILL
IAATALFDRKIESDKVAVVSTFSTTSWEGDIVNVSEGRAVLMSPVPLFGI
NEQDAGNITAFTSTGSNSSSHYAVREDANLAAQFISSCVRQLNDSYTVVY
TGAVIQSDDVQKVRCLDGTNGSENRTAATFFSNPAAVSQPSVQTVTLSRL
RNENGISSDRVSGVFGADVLDENGVTYSGYVAVTKNSHSDSNVVWSMYGM
VRSTGPFVYRVNIRLYLSGETDPEIPPCFDENPSIRYVGQWSFDGAQYTC
PDGISRPTERMENEELQSISLEMFSGSDEVQFEENADLLAWLLETDFALF
AAAKTFALEMRTRVRSDRMFYSLYEGETIKVTTGKTEDVVTLGLWETWLL
LGAIVALLLSIVLSSAWKVYQRWRLGIKSDVVSLESVADMYASEVRKCAY
PGEVLLQVGLVKGADGGAHLGIVEKDSGV*
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