Gcaud935.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud935.t1
Unique NameGcaud935.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length420
Homology
BLAST of Gcaud935.t1 vs. uniprot
Match: R7QG36_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG36_CHOCR)

HSP 1 Score: 438 bits (1127), Expect = 2.820e-143
Identity = 223/411 (54.26%), Postives = 289/411 (70.32%), Query Frame = 0
Query:    2 GNHFVVNIDHSALGWLMSIAEPSGRLMPWRLRLSEFTFDIRYKKRLLNTQAHELSRLPTNAETAPVDDLDIQCFIMEEYDSDTDDNSEGWGIYDLVLAASDAEAVS--GSFVPITSEELIWEQHTDPLCQQIRARLNSGAQLPFVTNDQGYLVRTVGNTRQIVVPHSLQSRVLHLSHYAKVLAHPGGRKLYYTLRLDFYLPATAFDAYSTSRGCAQCAKNRVKLREYSKQLVLFSARAPLEFFAIDILGEFVRTRLGNRFLLVITDRFSKLVWTAPLKKITAAAVAEAFVNHWVLAYRPPIDLLSDNGPQFTEKFFQDVCRILDIKTWFTTTYHPQGNEQVERFSRTMLNALRTYVAEHPNEWDLYTDAVTYAYNTQVHRTTKISPFELVLSRVPPSVLIEPQPTLDKYPS 410
            G HF+V+ DH++L WLM++ +PSGRL+ WRLRLSEF F+I+YKK   N+QA  LSRL T  ET    D +I CF+ E  +  T +N E +   D +LA     A      F  +T EELI EQ  DP C +I+  +++G    FV               Q+V+P SL+ RVL LSHYAK+  HPGGRKLY TLR  FY    A D Y+ ++ CA CA+ RVKLR+ +K++ LF+++APLEF AIDILGE + T+ GNR++LVI+DR+SKLV T PLKKI+AA +A+AFV+HWV  Y PP+ LLSDNG QFT +FFQ+VCRIL I+  FTTTYHPQ N QVERF RT+ +ALR YV EHP +WDL++DAVT+AYNTQVHRTT I+PFELVL+R P S+ ++ QP+L+ + S
Sbjct:  209 GEHFIVHTDHASLRWLMNVTDPSGRLIRWRLRLSEFDFEIKYKKGKGNSQADALSRLRTAGETVDEIDDEIPCFMAEPAEG-TVENEESFDAIDDILALEGGTAPDRLDQFQAVTPEELIREQAVDPFCNRIKEEIDAGK---FV---------------QLVIPQSLKDRVLGLSHYAKLAGHPGGRKLYKTLRRYFYWSTMALDCYAVAKNCAACARERVKLRKNTKEMKLFTSKAPLEFAAIDILGELITTKRGNRYILVISDRYSKLVRTVPLKKISAAHIAQAFVHHWVFVYGPPVKLLSDNGTQFTARFFQNVCRILGIRNVFTTTYHPQANGQVERFDRTLTSALRKYVGEHPKDWDLFSDAVTFAYNTQVHRTTNIAPFELVLARAPRSIALQAQPSLEGFSS 600          
BLAST of Gcaud935.t1 vs. uniprot
Match: R7Q4V7_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4V7_CHOCR)

HSP 1 Score: 424 bits (1089), Expect = 1.730e-140
Identity = 215/407 (52.83%), Postives = 274/407 (67.32%), Query Frame = 0
Query:    2 GNHFVVNIDHSALGWLMSIAEPSGRLMPWRLRLSEFTFDIRYKKRLLNTQAHELSRLPTNAETAPVDDLDIQCFIMEEYDSDTDDNSEGWGIYDLVLAASDAEAVS--GSFVPITSEELIWEQHTDPLCQQIRARLNSGAQLPFVTNDQ---GYLVRTVGNTRQIVVPHSLQSRVLHLSHYAKVLAHPGGRKLYYTLRLDFYLPATAFDAYSTSRGCAQCAKNRVKLREYSKQLVLFSARAPLEFFAIDILGEFVRTRLGNRFLLVITDRFSKLVWTAPLKKITAAAVAEAFVNHWVLAYRPPIDLLSDNGPQFTEKFFQDVCRILDIKTWFTTTYHPQGNEQVERFSRTMLNALRTYVAEHPNEWDLYTDAVTYAYNTQVHRTTKISPFELVLSRVPPSVLIEPQP 403
            G HF+V+ DH++L WLM++ +PSGRL+ WRLRLSEF F I+YKK   N+QA  LSRL T  ET                      N + +   D +LA     A      F  +T EELI EQ  DP C  I+  +++G    F    +   G L RT     Q+V+P S++ RVL LSHYAK+  HPGGRKLY TLR  FY P  A D Y+ ++ CA CA+ RVKLR  +K++ LF+ +APLEF AIDILGE + T+ GNR++LVI+DR+SKLV T PLKKI+AA +A+ FV+HWV  Y PP+ LLSDNG QFT +FFQ+VCRIL I+  FTTTYHPQ N QVERF+RT+ +ALR YV EHP +WDL++DAVT+AYNTQVHRTT I+PFELVL+R P S+ ++  P
Sbjct:  177 GEHFIVHTDHASLRWLMNVTDPSGRLIRWRLRLSEFDFKIKYKKGKANSQADALSRLRTAGET----------------------NEDRFDALDDILALEGGTAPDRFDQFQAVTPEELIREQAVDPFCNCIKEEMDAGKVRTFSMETEELEGTLCRTAAEFVQVVIPQSVRDRVLGLSHYAKLAGHPGGRKLYKTLRRYFYWPTMALDCYAVAKNCAACARERVKLRRNTKEMKLFTPKAPLEFVAIDILGELIITKRGNRYILVISDRYSKLVRTVPLKKISAAHIAQVFVHHWVFVYGPPVKLLSDNGTQFTARFFQNVCRILGIRNVFTTTYHPQANGQVERFNRTLTSALRKYVGEHPKDWDLFSDAVTFAYNTQVHRTTNIAPFELVLARAPRSIALQAHP 561          
BLAST of Gcaud935.t1 vs. uniprot
Match: R7QFB9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFB9_CHOCR)

HSP 1 Score: 395 bits (1016), Expect = 3.760e-127
Identity = 207/412 (50.24%), Postives = 265/412 (64.32%), Query Frame = 0
Query:    2 GNHFVVNIDHSALGWLMSIAEPSGRLMPWRLRLSEFTFDIRYKKRLLNTQAHELSRLPTNAETAPVDDLDIQCFIMEEYDSDTDDNSEGWGIYDLVLAASDAEAVSGSFVPITSEELIWEQHTDPLCQQIRARLNSGAQLPFVTNDQ---GYLVRTVGNTRQIVVPHSLQSRVLHLSHYAKVLAHPGGRKLYYTLRLDFYLPATAFDAYSTSRGCAQCAKNRVKLREYSKQLVLFSARAPLEFFAIDILGEFVRTRLGNRFLLVITDRFSKLVWTAPLKKITAAAVAEAFVNHWVLAYRPPIDLLSDNGPQFTEKFFQDVCRILDIKTWFTTTYHPQGNEQVERFSRTMLNALRTYVAEHPNEWDLYTDAVTYAYNTQVHRTTKISPFELVLSRVPPSVLIEPQPTLDKYPS 410
            G HFVV+ D+++L  LM++ +PSGRL+ WRLRLSEF F+I+YKK   N+QA  LSRL T  ET                                                     LI EQ  DP C +I+  +++G    F    +   G L RT     Q+V+P SL+ RVL LSHYAK+   PGGRKLY TLR  FY P  A D Y+ ++ CA CA+ RVKLR  +K++ LF+ +APLEF AIDILGE +  + GNR++LVI+DR+SKLV T PLKKI+AA +A+AFV+H V  Y PP+ LLSDNG QFT +FFQ+VCRIL I   FTTTYHPQ N QVERF+RT+ +ALR YV EHP +WDL++DAVT+AYNTQVHRTT I+PFELVL+R P S+ ++ QP+L+ + S
Sbjct:  239 GEHFVVHTDYASLRQLMNVTDPSGRLIRWRLRLSEFDFEIKYKKGKANSQADALSRLRTAEET-----------------------------------------------------LIREQAVDPFCNRIKEEMDAGKVRTFSMETEEFEGTLCRTAAEFAQVVIPQSLRDRVLSLSHYAKLAGRPGGRKLYKTLRRYFYWPTMALDCYAVAKNCAACARERVKLRRNTKEMKLFTPKAPLEFVAIDILGEQITRKRGNRYILVISDRYSKLVRTVPLKKISAAYIAQAFVHHLVFVYGPPVKLLSDNGTQFTARFFQNVCRILGICNVFTTTYHPQSNGQVERFNRTLTSALRKYVGEHPKDWDLFSDAVTFAYNTQVHRTTNIAPFELVLARAPRSIALQAQPSLEGFSS 597          
BLAST of Gcaud935.t1 vs. uniprot
Match: R7QSF8_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSF8_CHOCR)

HSP 1 Score: 366 bits (939), Expect = 1.850e-119
Identity = 188/385 (48.83%), Postives = 245/385 (63.64%), Query Frame = 0
Query:    2 GNHFVVNIDHSALGWLMSIAEPSGRLMPWRLRLSEFTFDIRYKKRLLNTQAHELSRLPTNAETAPVDDLDIQCFIMEEYDSDTDDNSEGWGIYDLVLAASDAEAVSGSFVPITSEELIWEQHTDPLCQQIRARLNSGAQLPFVTNDQ---GYLVRTVGNTRQIVVPHSLQSRVLHLSHYAKVLAHPGGRKLYYTLRLDFYLPATAFDAYSTSRGCAQCAKNRVKLREYSKQLVLFSARAPLEFFAIDILGEFVRTRLGNRFLLVITDRFSKLVWTAPLKKITAAAVAEAFVNHWVLAYRPPIDLLSDNGPQFTEKFFQDVCRILDIKTWFTTTYHPQGNEQVERFSRTMLNALRTYVAEHPNEWDLYTDAVTYAYNTQVHRTTKI 383
            G HF+V+ DHS+L WLM++ + SG L+ WRLRLSEF F+I+YKK  +NT+A  LSRL T  ET+   D +I C + + Y                                             P C Q +  +  G    F T  +   G L RT     Q+V+P SL+ RVL LSHYAK+  HP GRKLY TLR  F  P  A D Y+ +R CA CA+ RVKLR+ +K++ LF+  APLEF AIDILGE + T  GN ++LVI+DR+SKLV T PLKKI+AA +A+AFV++WV  Y PP+ LLSDNG QFT K+FQ++CRIL I+  FTT YHPQ N QVERF+RT+L+A+R Y+ +HP +WDL++DAVT+AYNT+VHRTT +
Sbjct:  164 GEHFIVHTDHSSLRWLMNVTDSSGSLILWRLRLSEFDFEIKYKKGKVNTKADALSRLLTKGETSNDVDEEIPCSMQDVY---------------------------------------------PFCIQTKEEMEEGRTNSFTTEAEEFEGILCRTSAEFVQVVIPQSLKDRVLGLSHYAKLAWHPEGRKLYKTLRRSFNWPTMALDCYAVARKCADCARERVKLRKNAKEMQLFTPNAPLEFVAIDILGELMTTSRGNWYILVISDRYSKLVRTVPLKKISAAHIAQAFVHNWVFIYGPPVKLLSDNGTQFTAKYFQNICRILGIRNVFTTKYHPQANGQVERFNRTILSAVRKYIGDHPKDWDLFSDAVTFAYNTKVHRTTNM 503          
BLAST of Gcaud935.t1 vs. uniprot
Match: R7Q800_CHOCR (Integrase catalytic domain-containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7Q800_CHOCR)

HSP 1 Score: 370 bits (949), Expect = 6.610e-118
Identity = 196/412 (47.57%), Postives = 257/412 (62.38%), Query Frame = 0
Query:    2 GNHFVVNIDHSALGWLMSIAEPSGRLMPWRLRLSEFTFDIRYKKRLLNTQAHELSRLPTNAETAPVDDLDIQCFIMEEYDSDTDDNSEGWGIYDLVLAASDAEAVSGSFVPITSEELIWEQHTDPLCQQIRARLNSGAQLPFVTNDQ---GYLVRTVGNTRQIVVPHSLQSRVLHLSHYAKVLAHPGGRKLYYTLRLDFYLPATAFDAYSTSRGCAQCAKNRVKLREYSKQLVLFSARAPLEFFAIDILGEFVRTRLGNRFLLVITDRFSKLVWTAPLKKITAAAVAEAFVNHWVLAYRPPIDLLSDNGPQFTEKFFQDVCRILDIKTWFTTTYHPQGNEQVERFSRTMLNALRTYVAEHPNEWDLYTDAVTYAYNTQVHRTTKISPFELVLSRVPPSVLIEPQPTLDKYPS 410
            G HF+V+  H++L WLM++ +PSGRL+ WRLRLSEF F+I+YKK   N+QA  LSRL T  ET    D +I CF+ E                        AEAV       T EELI EQ  DP C +I+  +++G    F    +   G L RT     Q+V+P SL+ RVL LSHYAK+  HPGGRKLY TLR  FY P  A D Y+ ++ CA CA+ R+                             + T+ GN+++LVI+DR+SKLV T PLKKI+AA +A+AFV++WV  Y PP+ LLSD G QFT +FFQ+VCRIL I+  FTTTYHPQ + QVERF+ T+ +AL+ YV EHP +WDL++DAVT AYNTQVHRTT ++PFELVL+R P S+ ++ QP+L+ + S
Sbjct:  184 GEHFIVHTGHASLRWLMNVTDPSGRLIRWRLRLSEFDFEIKYKKGKANSQADALSRLRTAGETVEEIDDEIPCFMAEP-----------------------AEAV-------TPEELIREQAVDPFCNRIKEEMDAGKVRTFSMKTEELEGTLCRTAAEFVQVVIPQSLRDRVLGLSHYAKLAGHPGGRKLYKTLRRYFYWPTMASDCYAVAKNCAACARERL-----------------------------ITTKRGNQYILVISDRYSKLVRTVPLKKISAAHIAQAFVHYWVFVYGPPVKLLSDIGTQFTTRFFQNVCRILGIRNVFTTTYHPQASGQVERFNHTLTSALQKYVGEHPKDWDLFSDAVTLAYNTQVHRTTNMAPFELVLARAPRSIALQAQPSLEGFSS 536          
BLAST of Gcaud935.t1 vs. uniprot
Match: R7QJ39_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ39_CHOCR)

HSP 1 Score: 353 bits (905), Expect = 9.920e-111
Identity = 196/409 (47.92%), Postives = 256/409 (62.59%), Query Frame = 0
Query:    2 GNHFVVNIDHSALGWLMSIAEPSGRLMPWRLRLSEFTFDIRYKKRLLNTQAHELSRLPTNAETAPVDDLDIQCFIMEEYDSDTDDNSEGWGIYDLVLAASDAEAVSGSFVPITSEELIWEQHTDPLCQQIRARLNSGAQLPFVTNDQGYLVRTVGNTRQIVVPHSLQSRVLHLSHYAKVLAHPGGRKLYYTLRLDFYLPATAFDAYSTSRGCAQCAKNRVKLREYSKQLVLFSARAPLEFFAIDILGEFVRTRLGNRFLLVITDRFSKLVWTAPLKKITAAAVAEAFVNHWVLAYRPPIDLLSDNGPQFTEKFFQDVCRILDIKTWFTTTYHPQGNEQVERFSRTMLNALRTYVAEHPNEWDLYTDAVTYAYNTQVHRTTKISPFELVLSRVPPSVLIEPQPTLDKYPS 410
            G HF+V+ DH++L WLM++ +PSGRL+ WRLRLS+F F+I+YKK   N+QA  LSRL T  ET    D +I CFI                          AE   G+     SE +   QH D        R NS   +P+        V T GNT  +  P   + RV  L    K+   PG ++     +  FY P  A D Y+ ++ CA CA+ RVKLR  + ++ LF+ +APLEF AIDILGE + T+ GNR++LVI+DR+SKLV T PLKKI+ A +A+AFV+HWV  Y PP+ LLSDNG QFT +FFQ+VCRIL I+  FT TYHPQ N QVE F+RT+ +ALR YV EHP +WDL++DAVT +YNTQVHRTT I+PFELVL+R P S+ ++ QPTL+ + S
Sbjct:  195 GEHFIVHTDHASLRWLMNVTDPSGRLIRWRLRLSKFDFEIKYKKGKANSQADALSRLRTAGETVDEIDDEIPCFI--------------------------AEPAEGTVEDEESENV---QHGDR-----GTRRNS---MPYCGG-----VCTSGNTTIVKGP---RPRVKPLR---KIGRPPGRQETLQDNQKIFYWPTMALDCYAVAKNCAACARERVKLRRNTNEMKLFTPKAPLEFVAIDILGELITTKRGNRYILVISDRYSKLVRTVPLKKISVAHIAQAFVHHWVFLYGPPVKLLSDNGTQFTARFFQNVCRILGIRNVFTNTYHPQANGQVEGFNRTLTSALRKYVGEHPKDWDLFSDAVTLSYNTQVHRTTNITPFELVLARAPRSIALQVQPTLENFSS 555          
BLAST of Gcaud935.t1 vs. uniprot
Match: R7QJW9_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJW9_CHOCR)

HSP 1 Score: 336 bits (861), Expect = 4.210e-105
Identity = 182/409 (44.50%), Postives = 241/409 (58.92%), Query Frame = 0
Query:    2 GNHFVVNIDHSALGWLMSIAEPSGRLMPWRLRLSEFTFDIRYKKRLLNTQAHELSRLPTNAETAPVDDLDIQCFIMEEYDSDTDDNSEGWGIYDLVLAASDAEAVSGSFVPITSEELIWEQHTDPLCQQIRARLNSGAQLPFVTNDQGYLVRTVGNTRQIVVPHSLQSRVLHLSHYAKVLAHPGGRKLYYTLRLDFYLPATAFDAYSTSRGCAQCAKNRVKLREYSKQLVLFSARAPLEFFAIDILGEFVRTRLGNRFLLVITDRFSKLVWTAPLKKITAAAVAEAFVNHWVLAYRPPIDLLSDNGPQFTEKFFQDVCRILDIKTWFTTTYHPQGNEQVERFSRTMLNALRTYVAEHPNEWDLYTDAVTYAYNTQVHRTTKISPFELVLSRVPPSVLIEPQPTLDKYPS 410
            G HF+V+ DH++L WLM++ +PSGRL+PWRLRLSEF F+I+YK+   N+QA  LSRL T  ET    D +I CF+ E         +  W    ++                          T  LC                        RT     Q+V+P SL+  VL LSHYAK+  HPGGR+LY TLR  FY P  A D Y+ ++ CA CA+ RVKLR  +K++ LF+ +APLEF AIDILGE + T+ GNR+ L                      +A+ FV+HWV  Y PP+ +LSDNG QFT +FFQ+V RIL I+  FTTTYH Q N QVERF+RT+ +AL  YV EHP + +L++DAVT+AYNTQVHRTT I+PF+LVL+R P S+ ++ QP+L+ + S
Sbjct:  203 GEHFIVHTDHASLRWLMNVKDPSGRLIPWRLRLSEFDFEIKYKRGKANSQADALSRLRTAGETVHEIDDEIPCFMSER-------PTVQWRTRKIL--------------------------TRTLC------------------------RTAAEFVQVVIPQSLRDGVLGLSHYAKLAGHPGGRELYKTLRRYFYWPTMALDCYAVAKNCAACARERVKLRRNTKEMKLFTPKAPLEFVAIDILGELITTKRGNRYQL---------------------HIAQVFVHHWVFVYGPPVKVLSDNGTQFTARFFQNVYRILGIRNVFTTTYHLQANGQVERFNRTLTSALPKYVGEHPKDRELFSDAVTFAYNTQVHRTTNIAPFKLVLARAPRSIALQAQPSLEGFSS 533          
BLAST of Gcaud935.t1 vs. uniprot
Match: R7QL13_CHOCR (Integrase catalytic domain-containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QL13_CHOCR)

HSP 1 Score: 319 bits (817), Expect = 4.600e-101
Identity = 167/333 (50.15%), Postives = 214/333 (64.26%), Query Frame = 0
Query:    2 GNHFVVNIDHSALGWLMSIAEPSGRLMPWRLRLSEFTFDIRYKKRLLNTQAHELSRLPTNAETAPVDDLDIQCFIMEEYDSDTDDNSEGWGIYDLVLAASDAEAVSGSFVPITSEELIWEQHTDPLCQQIRARLNSGAQLPFVTNDQGYLVRTVGNTRQIVVPHSLQSRVLHLSHYAKVLAHPGGRKLYYTLRLDFYLPATAFDAYSTSRGCAQCAKNRVKLREYSKQLVLFSARAPLEFFAIDILGEFVRTRLGNRFLLVITDRFSKLVWTAPLKKITAAAVAEAFVNHWVLAYRPPIDLLSDNGPQFTEKFFQDVCRILDIKTWFTTTYHP 334
            G HFVV+ DH++L WLM++ +PSGRL+ WRLRL EF F+I+YKK   N+QA  LSRL T  ET    D +I CF  E  +   +D          + AA D  A+ G   P   ++           Q +R       +L      +G L RT     Q+V+P SL+ RVL LSHYAK+  HPGGRKLY TLR  FY P  A D Y+ ++ CA CA+ RVK R+ +K++ LF+ +APLEF AIDILGE + T+ GNR++LVI+DR+SKLV T PLKKI+AA +A+AFV+HWV  Y PP  LLSDNG QFT +FFQ+VCRIL I+  FTTTYHP
Sbjct:  204 GEHFVVHTDHASLRWLMNVTDPSGRLIRWRLRLPEFDFEIKYKKGKANSQADALSRLRTAGETVDEIDNEIPCFTAEPAEGTVEDEES-------IDAADDILALEGGTAPDRLDQF----------QAVRTFSTETEEL------EGTLCRTAVEFVQVVIPQSLRDRVLGLSHYAKLAGHPGGRKLYKTLRRYFYWPTMALDCYAVAKNCAACARERVKFRKNTKEMKLFTPKAPLEFVAIDILGELITTKRGNRYILVISDRYSKLVRTVPLKKISAAHIAQAFVHHWVFVYGPPFKLLSDNGTQFTARFFQNVCRILGIRNVFTTTYHP 513          
BLAST of Gcaud935.t1 vs. uniprot
Match: R7QLW9_CHOCR (Integrase catalytic domain-containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QLW9_CHOCR)

HSP 1 Score: 316 bits (809), Expect = 5.540e-99
Identity = 175/402 (43.53%), Postives = 243/402 (60.45%), Query Frame = 0
Query:    4 HFVVNIDHSALGWLMSIAEPSGRLMPWRLRLSEFTFDIRYKKRLLNTQAHELSRLPTNAETAPVDDLDIQCFIMEEYDSDTDDNSEGWGIYDLVLAASDAEAVSGSFVPITSEELIWEQHTDPLCQQIRARLNSGAQLPFVTNDQGYLVRT--VGNTRQIVVPHSLQSRVLHLSHYAKVLAHPGGRKLYYTLRLDFYLPATAFDAYSTSRGCAQCAKNRVKLREYSKQLVLFSARAPLEFFAIDILGEFVRTRLGNRFLLVITDRFSKLVWTAPLKKITAAAVAEAFVNHWVLAYRPPIDLLSDNGPQFTEKFFQDVCRILDIKTWFTTTYHPQGNEQVERFSRTMLNALRTYVAEHPNEWDLYTDAVTYAYNTQVHRTTKISPFELVLSRVPPSVLIEPQP 403
            H  +  DH +L W+MS+ + SGRL  WRLRL EF F I+ +K  +N  A  +SRLPT A     +D++I+ F  +   S+ +D+          +   +AE    S  P+  EEL+  Q  D  CQ ++ ++++     F   D+G LVR   + + RQIVVP  L+ +  +L HY +   HPG  K+ YT+R  FY P+ A + ++  R C  CA+ RV+LR++S  L LF AR PLEF A+ ILG   R+   N++LLVI+D+F K+    PLK IT+  VA AFV +W+  Y PP  LLSDNG QF  KFFQ +C+I+ I+  FTT YHPQ N QVERF++T+L+ +R YV EH    D Y   +TYAYNTQVHR+T  +PFELV SR P  + +E  P
Sbjct:  130 HLELYPDHQSLKWMMSLTDASGRLARWRLRLLEFDFTIKNRKGAVNCIADAVSRLPTLANQVD-EDVEIE-FRRDAITSNFNDDG---------ICVVNAENTYLS--PVRIEELVISQANDRYCQMLKEKVDNEETSRFDVFDRGLLVRIAPLDDCRQIVVPTMLRQKGFYLCHYTRTSGHPGDTKMLYTMRRTFYWPSMALECHACMRQCDSCARERVQLRKHSTFLKLFPARRPLEFVAMGILGPLPRSTKRNQYLLVISDQFPKMTRAIPLKSITSMTVARAFVENWIYPYGPPAYLLSDNGGQFASKFFQKICQIMGIRNLFTTAYHPQTNGQVERFNQTILSGIRHYVVEHQKTRDEYCGPLTYAYNTQVHRSTGCTPFELVFSRPPGPMALEYTP 518          
BLAST of Gcaud935.t1 vs. uniprot
Match: R7QNI8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNI8_CHOCR)

HSP 1 Score: 325 bits (832), Expect = 6.450e-99
Identity = 176/405 (43.46%), Postives = 244/405 (60.25%), Query Frame = 0
Query:    5 FVVNIDHSALGWLMSIAEPSGRLMPWRLRLSEFTFDIRYKKRLLNTQAHELSRLP-TNAETAPVDDLDIQCFIMEEYDSDTDDNSEGWGIYDLVLAASDAEAVSGSFVPITSEELIWEQHTDPLCQQIRARLNSGAQLPFVTNDQGYLVRT--VGNTRQIVVPHSLQSRVLHLSHYAKVLAHPGGRKLYYTLRLDFYLPATAFDAYSTSRGCAQCAKNRVKLREYSKQLVLFSARAPLEFFAIDILGEFVRTRLGNRFLLVITDRFSKLVWTAPLKKITAAAVAEAFVNHWVLAYRPPIDLLSDNGPQFTEKFFQDVCRILDIKTWFTTTYHPQGNEQVERFSRTMLNALRTYVAEHPNEWDLYTDAVTYAYNTQVHRTTKISPFELVLSRVPPSVLIEPQPTLD 406
            F VN DH +L  LM++A+ SGRL  WRLRL+E+  D+ Y K + N  A  LSR+P T   T P+D+ +I C+ +  +D +   + E +   D V +                      +  +   +  R+R        F  N +  + R   +    QIVVP +L+ R+L+LSHY     H GGR+L+YTLR  FY P+ + D+YST R C  CAK R+ LR+++ +L  F    PLE+ AIDILGE  RT  GNR+LLV+TDR+SKL  T PLK+ITA  VA+AF++HWV  Y  P+ LLSDNG QFT +FF  VC+IL I++ FTT YHPQ N QVERF+RT+++ LR Y+A++  +WD YTDA+TY Y    +R   + PF+LVLS  P  + ++  P LD
Sbjct:  199 FTVNSDHHSLRRLMNLADASGRLARWRLRLAEYDSDVTYVKGIKNCLADALSRIPSTGGTTVPIDE-EIPCYSVMNFDDEPQHHEETYDPTDEVTSRL--------------------EKGEGFAELRRSR--------FFVNQERLVCRKAHLDGVEQIVVPTTLRERLLYLSHYPATSGHLGGRRLFYTLRQRFYWPSMSVDSYSTVRMCPDCAKARINLRKHNSELKTFPPSGPLEYIAIDILGELPRTPRGNRYLLVMTDRYSKLTRTVPLKRITAETVAQAFISHWVFVYGAPVKLLSDNGGQFTSRFFLAVCKILSIESGFTTAYHPQTNGQVERFNRTLVSTLRHYLADNQRDWDQYTDALTYGYYCTANRMIGMRPFDLVLSGTPSPLSLQQTPLLD 574          
The following BLAST results are available for this feature:
BLAST of Gcaud935.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QG36_CHOCR2.820e-14354.26Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q4V7_CHOCR1.730e-14052.83Integrase catalytic domain-containing protein n=1 ... [more]
R7QFB9_CHOCR3.760e-12750.24Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QSF8_CHOCR1.850e-11948.83Integrase catalytic domain-containing protein n=1 ... [more]
R7Q800_CHOCR6.610e-11847.57Integrase catalytic domain-containing protein n=2 ... [more]
R7QJ39_CHOCR9.920e-11147.92Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QJW9_CHOCR4.210e-10544.50Integrase catalytic domain-containing protein n=1 ... [more]
R7QL13_CHOCR4.600e-10150.15Integrase catalytic domain-containing protein n=2 ... [more]
R7QLW9_CHOCR5.540e-9943.53Integrase catalytic domain-containing protein n=2 ... [more]
R7QNI8_CHOCR6.450e-9943.46Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 163..221
e-value: 1.9E-6
score: 27.8
NoneNo IPR availableGENE3D1.10.340.70coord: 133..219
e-value: 2.4E-8
score: 36.1
NoneNo IPR availablePANTHERPTHR47266FAMILY NOT NAMEDcoord: 165..396
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 233..407
e-value: 2.1E-47
score: 163.0
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 237..334
e-value: 2.3E-9
score: 37.4
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 234..393
score: 25.417936
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 233..390

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_212_length_36801_cov_4.990929contigNODE_212_length_36801_cov_4.990929:12241..13500 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud935.t1Gcaud935.t1Gracilaria caudata M_176_S67 malemRNANODE_212_length_36801_cov_4.990929 12241..13500 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud935.t1 ID=Gcaud935.t1|Name=Gcaud935.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=420bp
MGNHFVVNIDHSALGWLMSIAEPSGRLMPWRLRLSEFTFDIRYKKRLLNT
QAHELSRLPTNAETAPVDDLDIQCFIMEEYDSDTDDNSEGWGIYDLVLAA
SDAEAVSGSFVPITSEELIWEQHTDPLCQQIRARLNSGAQLPFVTNDQGY
LVRTVGNTRQIVVPHSLQSRVLHLSHYAKVLAHPGGRKLYYTLRLDFYLP
ATAFDAYSTSRGCAQCAKNRVKLREYSKQLVLFSARAPLEFFAIDILGEF
VRTRLGNRFLLVITDRFSKLVWTAPLKKITAAAVAEAFVNHWVLAYRPPI
DLLSDNGPQFTEKFFQDVCRILDIKTWFTTTYHPQGNEQVERFSRTMLNA
LRTYVAEHPNEWDLYTDAVTYAYNTQVHRTTKISPFELVLSRVPPSVLIE
PQPTLDKYPSPPFTQGRLA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041588Integrase_H2C2
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf