Gcaud9343.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9343.t1
Unique NameGcaud9343.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length996
Homology
BLAST of Gcaud9343.t1 vs. uniprot
Match: A0A2V3J324_9FLOR (PRA1 family protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J324_9FLOR)

HSP 1 Score: 301 bits (771), Expect = 6.260e-92
Identity = 152/233 (65.24%), Postives = 189/233 (81.12%), Query Frame = 0
Query:  767 ASMPAAYSNIDDAS-RPADPPAAEPPL---KPSAVDRVHAVARGAQTVATDATQSVKEFLQAPMPQMSIYTEPFNPSETHSMRDRFQMVCDNCRRWSEFADVSTMNAPAASEVKRRIAHNLETFFYNYVLISFVVLLLCGLFHPMRALALAAMVLGAVLLYIIFPEDYRVSDSFSITKPIKHVFMTVFALLVLTVGHVFNFLFLVVCITVPIVLLHAFFREHDASTALDNAHI 995
            A++ A Y N+DDA+ RPADPP A  PL     SA  RV AVARGAQ  A DATQSVK+FL APMPQ+S+YT+PFNPS + S RDR Q+VCDNCR W EFA++S +NAP A+EVKRR+AHNLETFFYNYV+++F VLL+ G+ HP+ ALALA ++    +LYI+FPEDYRV+D+F I+KPIKHVF+T+ ALLVLTVGHV NFLFLVVCI +PIVLLH+ FREHD + A+++ H+
Sbjct:    2 AAVTAGYRNLDDATARPADPPNASHPLPQHNASAASRVQAVARGAQNAAADATQSVKDFLSAPMPQLSLYTDPFNPSASLSARDRLQLVCDNCRPWREFAELSAINAPPAAEVKRRVAHNLETFFYNYVVVAFAVLLIAGVLHPLSALALAVLLFAIFMLYIMFPEDYRVTDTFHISKPIKHVFITLLALLVLTVGHVLNFLFLVVCIALPIVLLHSLFREHDPNAAVESLHV 234          
BLAST of Gcaud9343.t1 vs. uniprot
Match: R7QRI6_CHOCR (PRA1 family protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRI6_CHOCR)

HSP 1 Score: 166 bits (420), Expect = 1.010e-43
Identity = 83/167 (49.70%), Postives = 113/167 (67.66%), Query Frame = 0
Query:  826 MPQMSIYTEPFNPSETHSMRDRFQMVCDNCRRWSEFADVSTMNAPAASEVKRRIAHNLETFFYNYVLISFVVLLLCGLFHPMRALALAAMVLGAVLLYIIFPEDYRVSDSFSITKPIKHVFMTVFALLVLTVGHVFNFLFLVVCITVPIVLLHAFFREHDASTALDN 992
            MP  + Y EP NP+  +S++DR Q+V ++CR W+EF D      P ASE K R+ HN+E FFYNY++++  +L +  +FHP+RA+ LAA V  A +LYI+FPEDY+V+D+  I+ PIKH  M V  +LVL VGHVF  LF V     PIVL+HAF R+H A+ A  N
Sbjct:    1 MPDFNPYVEPLNPAAQYSLKDRAQLVVESCRPWAEFLDPHAFAPPPASEAKLRVGHNVEVFFYNYLVLAMALLAVFAVFHPVRAVLLAATVAVAAVLYILFPEDYQVTDNIVISMPIKHAVMAVLTVLVLVVGHVFALLFWVAVTFAPIVLVHAFLRQHSAAPADAN 167          
BLAST of Gcaud9343.t1 vs. uniprot
Match: A0A5J4YMQ5_PORPP (PRA1 family protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YMQ5_PORPP)

HSP 1 Score: 108 bits (271), Expect = 3.640e-23
Identity = 62/168 (36.90%), Postives = 92/168 (54.76%), Query Frame = 0
Query:  817 SVKEFLQAPMPQMSIYTEPFNPSETHSMRDRFQMVCDNCRRWSEFADVSTMNAPAASEVKRRIAHNLETFFYNYVLISFVVLLLCGLFHPMRALALAAMVLGAVLLYIIFPEDYRVSDSFSITKPIKHVFMTVFALLVLTVGHVFNFLFLVVCITVPIVLLHAFFREH 984
            +VK+ + A M  + IYTEP  P    S++DR  +V ++ R W EF   S MN P A E+  R +HN+ETFFYNYVL++ + L+     HP+  L+L      AV  Y++ PE   +     +  P KH+ M V A + L  GH+   +  +    + +V LHA FR+H
Sbjct:   40 NVKDAVSAMMKDVKIYTEPIQPGSEMSLKDRVVVVWESARPWGEFFRPSAMNKPPAGEMGARFSHNVETFFYNYVLLAVLFLVSMFFIHPIATLSLCVCGAFAVYAYVLHPEPIEIGGR-VLETPAKHIAMAVLAGIALLFGHMGGLIVSLAVFLMVVVGLHAVFRDH 206          
BLAST of Gcaud9343.t1 vs. uniprot
Match: M2Y8S7_GALSU (PRA1 family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y8S7_GALSU)

HSP 1 Score: 65.5 bits (158), Expect = 7.540e-8
Identity = 35/125 (28.00%), Postives = 64/125 (51.20%), Query Frame = 0
Query:  831 IYTEPFNPSETHSMRDRFQMVCDNCRRWSEFADVSTMNAPAASEVKRRIAHNLETFFYNYVLISFVVLLLCGLFHPMRALALAAMVLGAVLLYIIFPEDYRVSDSFSITKPIKHVFMTVFALLVL 955
            ++T PF P++   +RDR  ++  + + W +F D+ + + P       R+A NL+++ YNYV+      L   LFHP+  L+L    L  V L++++P          ++  IK +  +  AL+ L
Sbjct:  104 LFTTPFEPNQELGVRDRLTLIWGSAKPWKDFLDIRSFSIPPMDSWSTRVATNLQSYLYNYVICVTFFCLFLLLFHPLGILSLFLETLLVVALFLVYPGHTETGLLGVVSPTIKVIVASAMALIFL 228          
The following BLAST results are available for this feature:
BLAST of Gcaud9343.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J324_9FLOR6.260e-9265.24PRA1 family protein n=1 Tax=Gracilariopsis chorda ... [more]
R7QRI6_CHOCR1.010e-4349.70PRA1 family protein n=1 Tax=Chondrus crispus TaxID... [more]
A0A5J4YMQ5_PORPP3.640e-2336.90PRA1 family protein n=1 Tax=Porphyridium purpureum... [more]
M2Y8S7_GALSU7.540e-828.00PRA1 family protein n=1 Tax=Galdieria sulphuraria ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004895Prenylated rab acceptor PRA1PFAMPF03208PRA1coord: 854..989
e-value: 2.9E-20
score: 72.3
IPR004895Prenylated rab acceptor PRA1PANTHERPTHR19317PRENYLATED RAB ACCEPTOR 1-RELATEDcoord: 826..985
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..193
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..266
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 322..458
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 280..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 393..407
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..294
NoneNo IPR availablePANTHERPTHR19317:SF0PRENYLATED RAB ACCEPTOR PROTEIN 1coord: 826..985
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 927..945
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 886..904
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..885
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 978..995
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 909..926
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 946..977
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 905..908
NoneNo IPR availableTMHMMTMhelixcoord: 909..926
NoneNo IPR availableTMHMMTMhelixcoord: 885..904
NoneNo IPR availableTMHMMTMhelixcoord: 946..968

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1524_length_9953_cov_3.701683contigNODE_1524_length_9953_cov_3.701683:1770..8134 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9343.t1Gcaud9343.t1Gracilaria caudata M_176_S67 malemRNANODE_1524_length_9953_cov_3.701683 1770..8134 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9343.t1 ID=Gcaud9343.t1|Name=Gcaud9343.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=996bp
MNESEATTIPPDHGGSEWSVGSRCKSTNHAPRSNEHAQSGKYRDDDAPTV
PRNAVVDDSYTTKCASAPISTSAPSNRYASESPQAAKITSTRAFHPITPY
QHHGSLKSDCEPTRQGSQFPNGRTRRNAVSLSAPLLKVGKGSSRAVPARL
DANKKRAATGVPPSGGSAQSAADLGLSTEAPLTRGSTASKTTAHSKKTAD
EAVRFRQLSTLLPSVSLKEPTWKTAPFESHSERKGVGVENASPAHDAQPQ
LSTRHNSSNANAADVGDLSEQKSCPPKPARFLTSDNSVQNQRRETLLPPA
SCAVVPRIADITIENVTKAGEKKGHSEVTSHQPTCAALNKEEKAASEGGL
VAEKRAGNESSGAPQSSVVRQKRTYRRRKINKDDPSGSVTKPKTKAVRRK
REGKKAKKAAKLSTDAERNASAASQDNLAERKTRGGRKRKNKAAPSEEHK
PRKRRAKKAVVDVQETEAVNGARNGEEQLGHVWAQTPVARSMFLDNDMRS
LPEPRESQRHYRARRAVGGADSLIGAARLAALNFGGVVNRERLPPIPKEL
LKDVTCKQEVEENDTAVELDEGMAHDGDREIGAEKSKEVSKIRKTERNAT
MSEDDLEVESRQCAAADDSDGGEIRRLRKEVQMLRALLLWKESDRRDGGK
TVSNTNEETMDLIRLGCEEGSGQSERTLRAVRVVRLGELLSRLDSDVREV
SRRMDELATHVLHMRHEGIYEHCVYEGVQFIGYEMSLGSACDKSISSVLQ
VFDVVKRGVLAILDMAASMPAAYSNIDDASRPADPPAAEPPLKPSAVDRV
HAVARGAQTVATDATQSVKEFLQAPMPQMSIYTEPFNPSETHSMRDRFQM
VCDNCRRWSEFADVSTMNAPAASEVKRRIAHNLETFFYNYVLISFVVLLL
CGLFHPMRALALAAMVLGAVLLYIIFPEDYRVSDSFSITKPIKHVFMTVF
ALLVLTVGHVFNFLFLVVCITVPIVLLHAFFREHDASTALDNAHI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004895Prenylated_rab_accept_PRA1