Gcaud9339.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9339.t1
Unique NameGcaud9339.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length260
Homology
BLAST of Gcaud9339.t1 vs. uniprot
Match: A0A2V3IWT0_9FLOR (PiRNA biogenesis protein EXD1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWT0_9FLOR)

HSP 1 Score: 339 bits (869), Expect = 8.830e-114
Identity = 174/267 (65.17%), Postives = 206/267 (77.15%), Query Frame = 0
Query:    1 MSASRYEVPKTPYISL--------SDKTRRKNDTVSTVVHTRYPTPRRQPRNARPRRPANKERNEQLPLRYITSVSECTNAVHKLSSFKRVAVDCEGVALSRTGRLCLLQIASPHHIYVFDLVSRDVAHAKIMFEQGGLKQLLENRDIQKVTHDCRHDSDALYHQFGVKLGPVIDTQVVFAVLRKVRGMPEGLPVSLKTLLKKFTSVTEDDLNMKNAIKTSMRGDDDFWYRRPLSQQALHYARLDVEHLLSVTNLLSKYIHSADKSA 259
            MS SRYE+PK+ Y +L        + K +R +D  ++   T  P+ RRQ R  +PR P ++ R    PL Y+T++ EC  AV  LS F R+AVDCEGVALSRTGRLCLLQ+ASP+H+Y+ DLV  +  HA+ MFEQGGLK LL+N  + KV HDCRHDSDALYHQFGVKL  VIDTQVVFAVLRK RGMPEGLPVSLKTLLKKFTS TED+L MKNAIKTSM+GDDDFW RRPLSQ+AL YARLDVEHLLS+T+ LS+YI +AD +A
Sbjct:    1 MSTSRYEIPKSSYTALPHRRAGTSAKKPKRNSDVFASTPRTLRPSGRRQSRQ-KPRYP-DQTRRHPPPLTYVTTLEECARAVSSLSEFNRIAVDCEGVALSRTGRLCLLQLASPNHLYLIDLVRDEPDHARAMFEQGGLKHLLQNPKVYKVIHDCRHDSDALYHQFGVKLAAVIDTQVVFAVLRKARGMPEGLPVSLKTLLKKFTSATEDELGMKNAIKTSMQGDDDFWLRRPLSQEALQYARLDVEHLLSITSTLSRYIRTADPNA 265          
BLAST of Gcaud9339.t1 vs. uniprot
Match: R7QTP1_CHOCR (3'-5' exonuclease domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTP1_CHOCR)

HSP 1 Score: 248 bits (632), Expect = 4.330e-77
Identity = 118/196 (60.20%), Postives = 151/196 (77.04%), Query Frame = 0
Query:   64 ITSVSECTNAVHKLSSFKRVAVDCEGVALSRTGRLCLLQIASPHHIYVFDLVSRDVAHAKIMFEQGGLKQLLENRDIQKVTHDCRHDSDALYHQFGVKLGPVIDTQVVFAVLRKVRGMPEGLPVSLKTLLKKFTSVTEDDLNMKNAIKTSMRGDDDFWYRRPLSQQALHYARLDVEHLLSVTNLLSKYIHSADKSA 259
            ++SV EC   V +LS F RVAVDCEGVALSR G+LCL+Q+AS   I+ FD+V  D  H + +FE+GGL++LLEN  + KV HDCRHDSDAL+HQFGV+LGPV+DTQVVF+ LRK RGM EGLPVS++TLLKKFT  +E+DL +K A++  M GD + W RRPL ++A+ YAR+DVEHLL +  LL  Y+  AD+ A
Sbjct:  134 VSSVEECRRVVTRLSRFDRVAVDCEGVALSRKGKLCLVQVASVDGIFFFDVV--DEKHGRQIFEEGGLRRLLENDRVSKVMHDCRHDSDALFHQFGVRLGPVVDTQVVFSELRKARGMEEGLPVSMRTLLKKFTGASEEDLVVKVAVRDQMSGDKELWQRRPLGEKAMQYARIDVEHLLFLEELLRGYLFDADRKA 327          
BLAST of Gcaud9339.t1 vs. uniprot
Match: A0A7S3EQ64_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EQ64_9RHOD)

HSP 1 Score: 167 bits (422), Expect = 6.770e-47
Identity = 83/170 (48.82%), Postives = 113/170 (66.47%), Query Frame = 0
Query:   83 VAVDCEGVALSRTGRLCLLQIASPHHIYVFDLVSRDVAHAKIMFEQGGLKQLLENRDIQKVTHDCRHDSDALYHQFGVKLGPVIDTQVVFAVLRKVRGMPEGLPVSLKTLLKKFTSVTEDDLNMKNAIKTSMRGDDDFWYRRPLSQQALHYARLDVEHLLSVTNLLSKYI 252
            +A+DCEG ALSRTGRLCL+QIAS    Y+FD++    A    +F  GG+  LLE+  I KV HDCR DSDALY QF VKL  V DTQV +   R+ +G+   +PV LKTLL+ F+  T ++ N+K +IK+  + +   W +RPL  +A+ YA+ D+EHLL+V N   KY+
Sbjct:   22 LALDCEGTALSRTGRLCLVQIASRKKAYLFDVI----AIGGELFTAGGIGPLLESETIVKVVHDCRQDSDALYWQFNVKLANVFDTQVAYTAWREQKGIETTIPVGLKTLLRTFSVTTVEEENLKASIKSQFQDNPKLWEQRPLPTEAITYAKFDIEHLLNVYNQFKKYL 187          
BLAST of Gcaud9339.t1 vs. uniprot
Match: M2XBK0_GALSU (3'-5' exonuclease domain-containing protein / KH domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XBK0_GALSU)

HSP 1 Score: 139 bits (351), Expect = 1.290e-36
Identity = 75/169 (44.38%), Postives = 108/169 (63.91%), Query Frame = 0
Query:   83 VAVDCEGVALSRTGRLCLLQIASPHHIYVFDLVSRDVAHAKIMFEQGGLKQLLENRDIQKVTHDCRHDSDALYHQFGVKLGPVIDTQVVFAVLRKVRGMPEGLPVSLKTLLKKFTS--VTEDDLNMKNAIKTSMRGDDDFWYRRPLSQQALHYARLDVEHLLSV-TNLL 248
            +AVDCEGV LSR G+LCLLQ+++    ++FD+ +      K +F   G K++LE+  I KV HDCR+DSDAL+  +GV+L  V+DTQV F +LR+ +G    LPV   TLL++F +  ++   L +K   K     D +FW RRP+ + AL YA  DV+ LL + TN+L
Sbjct:   32 IAVDCEGVNLSRDGKLCLLQVSTGTKTFIFDVCALQ----KELF-LTGFKEILESERILKVFHDCRYDSDALWWLYGVRLRNVLDTQVAFRILREQQGYTRQLPVKFITLLRRFVNQEISPQTLELKRTFKNRFSQDRNFWLRRPIPKDALVYAAYDVKKLLEIATNIL 195          
BLAST of Gcaud9339.t1 vs. uniprot
Match: L8GZC6_ACACA (3'5' exonuclease domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZC6_ACACA)

HSP 1 Score: 134 bits (338), Expect = 1.040e-32
Identity = 77/235 (32.77%), Postives = 120/235 (51.06%), Query Frame = 0
Query:   64 ITSVSECTNAVHKLSSFKRVAVDCEGVALSRTGRLCLLQIASPHHIYVFDLVSRDVAHAKIMFEQGGLKQLLENRDIQKVTHDCRHDSDALYHQFGVKLGPVIDTQVVFAVLRKVRGMPEGLPVSLKTLLKKF-TSVTE---------------------------------------DDLN-MKNAIKTSMRGDDDFWYRRPLSQQALHYARLDVEHLLSVTNLLSKYIHSADK 257
            ++ + EC   V +L+  + +AVDCEGV LSR G LCL+QI +   +Y+ D++     H + +FE+GGL+ LLE+  ++KV HDCR DSDA+YHQ+GV L  V DTQ+ +AV+++  G    LPV L T+L+ + T + E                                       D +N  K   +  M  D  +W  RPL+   + YA  DV  L  V   +  ++++ ++
Sbjct:  165 VSQIEECREMVAELTKLEVIAVDCEGVNLSREGELCLVQIGTESKVYLVDVLE----HGRALFEEGGLRALLESTKVRKVLHDCRGDSDAMYHQYGVALQNVFDTQIAYAVIKRQMGQGTPLPVGLNTVLRAYATPILETKAAQEQEKERAERKKQQQASGDKSAADAPFALDLVRRIDAINSFKKEERLKMVEDPTYWKTRPLTSSMVGYASEDVMFLCLVYKQMHGFLNAHNR 395          
BLAST of Gcaud9339.t1 vs. uniprot
Match: A0A6B2L826_9EUKA (3'-5' exonuclease domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L826_9EUKA)

HSP 1 Score: 131 bits (330), Expect = 1.060e-32
Identity = 74/180 (41.11%), Postives = 109/180 (60.56%), Query Frame = 0
Query:   63 YITSVSECTNAVHKLSSFKRVAVDCEGVA---LSRTGRLCLLQIASPHH-IYVFDLVSRDVAHAKIMFEQGGLKQLLENRDIQKVTHDCRHDSDALYHQFGVKLGPVIDTQVVFAVLRKVRGMPEGLPVSLKTLLKKFTSVTEDDLNMKNAIKTSMRGDDDFWYRRPLSQQALHYARLDV 238
            +I ++ +C  AV +LS  K +AVDCE      + RT  LCLLQIA+P    Y+FD++    A  K +F++GGLK+LLEN++I K+ HDCR D+D L++Q  V++  V DTQ+ +A  R+ +     LPV LK LLK+F          K   +  M   +D+W  RP+++  L+YAR DV
Sbjct:   92 FIDTIDKCKVAVAELSKQKMIAVDCEWAGSRDVPRTQELCLLQIANPFKKAYLFDVL----AVGKDLFDKGGLKELLENKNIMKIFHDCRWDADILWNQMNVRVENVFDTQIGYACYRRQQESMTPLPVGLKNLLKRFA--LGGTHTSKEEARQGMEDREDYWKIRPMTEVMLNYAREDV 265          
BLAST of Gcaud9339.t1 vs. uniprot
Match: A0A1Y1I9J8_KLENI (Ribonuclease H-like domain containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I9J8_KLENI)

HSP 1 Score: 125 bits (314), Expect = 5.420e-29
Identity = 80/193 (41.45%), Postives = 105/193 (54.40%), Query Frame = 0
Query:   64 ITSVSECTNAVHKLSSFKRVAVDCEGVALSRTGRLCLLQIASP---HHIYVFDLVSRDVAHAKIMFEQGGLKQLLENRDIQKVTHDCRHDSDALYHQFGVKLGPVIDTQVVFAVLRKV---------RGMPEGLPVSLKTLLKKFTSVTEDDLNMKNAIKTSMRGDDDFWYRRPLSQQALHYARLDVEHLLSV 244
            IT       AV  ++    +A+DCEG  LSRTGRLCL+Q+A P   H +Y+FDLVS D    + + +  G   +LE+R + KV HDCR DSDAL+HQ G++L  V DTQ  +  L KV         R +P  LP  L  LLK++T     + + K   K  M  D   W +RPLS   L YA  DV  L +V
Sbjct:  212 ITDKEALGAAVQSIAQHSTIAIDCEGCNLSRTGRLCLVQVALPPPKHCVYLFDLVSMDSDTLEALKQSLGT--ILEDRSVTKVIHDCRQDSDALFHQLGIRLDGVFDTQASYVALVKVLKAQACSTSRFVP--LP-GLNQLLKEYTG---KENSAKQDGKVLMERDPSIWEKRPLSFVLLQYAAQDVMGLFAV 396          
BLAST of Gcaud9339.t1 vs. uniprot
Match: A0A2D8QN62_9GAMM (3'-5' exonuclease domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D8QN62_9GAMM)

HSP 1 Score: 121 bits (303), Expect = 2.050e-28
Identity = 71/180 (39.44%), Postives = 109/180 (60.56%), Query Frame = 0
Query:   74 VHKLSSFKRVAVDCEGVALSRTGRLCLLQIASPHHIYVFDLVSRDVAHAKIMFEQGGLKQLLENRDIQKVTHDCRHDSDALYHQFGVKLGPVIDTQVVFAVLRKVRG-MPEGLPVSLKTLLKKFTS----VTEDDLNMKNAIKTSMRGDDDFWYRRPLSQQALHYARLDVEHLLSVTNLL 248
            V++L   K +A DCEGV LSRTG++ LLQIA P  I++ D+++   A  K +F +GGLK+++++ +I K+ +D R DSDAL+HQ  V L  V+D Q++   +R+  G + E LP   KT+ ++ T+    V ED       + TS+  D D W RRPL+  A  YA LD   L+ + + +
Sbjct:  176 VNELKQSKVIAYDCEGVRLSRTGKITLLQIAIPEKIFLIDVMT---AGGKEIFVEGGLKEIIQSEEILKLAYDVRMDSDALFHQHDVLLKNVLDLQLLDIAIRRAAGTLVEYLPSLSKTVNRRLTNAEILVCEDLKKRVKNMYTSIE-DGDLWARRPLTDDARRYAALDAWILMKLNHAM 351          
BLAST of Gcaud9339.t1 vs. uniprot
Match: K8EKC7_9CHLO (3'-5' exonuclease domain-containing protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EKC7_9CHLO)

HSP 1 Score: 118 bits (296), Expect = 1.700e-27
Identity = 73/179 (40.78%), Postives = 103/179 (57.54%), Query Frame = 0
Query:   71 TNAVHKLSSFKRVAVDCEGVALSRTGRLCLLQIASPHHIYVFDLVSRDVAHAKIMFEQGGLKQLLENRDIQKVTHDCRHDSDALYHQFGVKLGPVIDTQVV-FAVLRKVRGMPEGLPVSLKTLLKKFTS----VTEDDLNMKNAIKTSMRGDDDFWYRRPLSQQALHYARLDVEHLLSV 244
            T  V +L   K +A DCEGV LSRTG++ LLQIA P  I++ D+++      K +F  GGLK ++E+ +I K+ +D R DSDAL+HQ  V L  V+D Q++  A+ R   G+ E LP   KT+ ++ T+    V ED       + TS+  D D W RRPL   A  YA LD   L+ +
Sbjct:  160 TQCVLELKRAKVIAYDCEGVRLSRTGKITLLQIAIPKKIFLIDVMTIG---GKEVFTDGGLKDIIESEEILKLAYDVRMDSDALFHQHDVVLKNVLDLQLLDIAIRRAAGGIVEHLPSLSKTVSRRLTNAEILVCEDLKKRVKNMYTSVE-DGDLWARRPLIDDARRYAALDAWVLMKL 334          
BLAST of Gcaud9339.t1 vs. uniprot
Match: UPI0015AD3422 (egalitarian protein homolog n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015AD3422)

HSP 1 Score: 119 bits (299), Expect = 5.370e-27
Identity = 76/191 (39.79%), Postives = 105/191 (54.97%), Query Frame = 0
Query:   61 LRYITSVSECTNAVHKLSSFKR--VAVDCEGVALSRTGRLCLLQIAS-PHHIYVFDLVSRDVAHAKIMFEQGGLKQLLENRDIQKVTHDCRHDSDALYHQFGVKLGPVIDTQVVFAVLRKVRGMPEGLPV------SLKTLLKKFTSVTEDDLNMKNAIKTSMRGDDDFWYRRPLSQQALHYARLDVEHLL 242
            ++ +T   EC++ V  + S K   ++ D EGV L  +G + LLQ A+   HI++FDL+S        + E GGLK +LE++D+ KV HDCR+DS ALYHQFGV L  V DTQ   AVL++      G PV      SL TL   +          K+ +K+  R D  FW RRPL+   + +A  DV  LL
Sbjct:  362 VKIVTKTKECSSVVKYILSLKDPVISFDGEGVNLGPSGPMTLLQFATLDEHIFLFDLLS-----CPQLMEDGGLKDVLESQDVLKVAHDCRNDSGALYHQFGVILANVFDTQAAHAVLQQ---QDAGKPVYKVKNVSLNTLCSTYGGPVNP---RKDQMKSLYRRDQKFWSRRPLTDDMIFHAAFDVFCLL 541          
The following BLAST results are available for this feature:
BLAST of Gcaud9339.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWT0_9FLOR8.830e-11465.17PiRNA biogenesis protein EXD1 n=1 Tax=Gracilariops... [more]
R7QTP1_CHOCR4.330e-7760.203'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A7S3EQ64_9RHOD6.770e-4748.82Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
M2XBK0_GALSU1.290e-3644.383'-5' exonuclease domain-containing protein / KH d... [more]
L8GZC6_ACACA1.040e-3232.773'5' exonuclease domain containing protein n=1 Tax... [more]
A0A6B2L826_9EUKA1.060e-3241.113'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A1Y1I9J8_KLENI5.420e-2941.45Ribonuclease H-like domain containing protein n=1 ... [more]
A0A2D8QN62_9GAMM2.050e-2839.443'-5' exonuclease domain-containing protein n=1 Ta... [more]
K8EKC7_9CHLO1.700e-2740.783'-5' exonuclease domain-containing protein n=1 Ta... [more]
UPI0015AD34225.370e-2739.79egalitarian protein homolog n=1 Tax=Stegodyphus du... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainSMARTSM0047435exoneu6coord: 61..253
e-value: 9.6E-14
score: 61.7
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 62..250
e-value: 1.6E-27
score: 96.3
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 6..259
e-value: 6.2E-47
score: 162.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..58
NoneNo IPR availablePANTHERPTHR46628PIRNA BIOGENESIS PROTEIN EXD1coord: 41..253
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 50..255

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_199_length_38196_cov_4.525364contigNODE_199_length_38196_cov_4.525364:11253..12032 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9339.t1Gcaud9339.t1Gracilaria caudata M_176_S67 malemRNANODE_199_length_38196_cov_4.525364 11253..12032 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9339.t1 ID=Gcaud9339.t1|Name=Gcaud9339.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=260bp
MSASRYEVPKTPYISLSDKTRRKNDTVSTVVHTRYPTPRRQPRNARPRRP
ANKERNEQLPLRYITSVSECTNAVHKLSSFKRVAVDCEGVALSRTGRLCL
LQIASPHHIYVFDLVSRDVAHAKIMFEQGGLKQLLENRDIQKVTHDCRHD
SDALYHQFGVKLGPVIDTQVVFAVLRKVRGMPEGLPVSLKTLLKKFTSVT
EDDLNMKNAIKTSMRGDDDFWYRRPLSQQALHYARLDVEHLLSVTNLLSK
YIHSADKSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf