Gcaud933.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud933.t1
Unique NameGcaud933.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length215
Homology
BLAST of Gcaud933.t1 vs. uniprot
Match: A0A2V3IQ80_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ80_9FLOR)

HSP 1 Score: 113 bits (282), Expect = 4.650e-27
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 0
Query:   36 KVYADLGVPDQYMVRQLSVLDTGAGPNFLVESLLPPQVRSRMRSAPPIDIADANNRPLSTVGVIDLIVRIGRCVVQLDFLVGQKLAAPMILGCDFCDRFVDAIRPRDKTVEMVDGNTVPI 155
            KVYAD+G+    + R+L+VLDTGAGPNF   S L     + M+ A   DI DAN RP+ ++G I L+V+ G  V +L F+V   LA+P++LGCD+ DRFV+ IRP+++ VE+ +G TVPI
Sbjct:  142 KVYADIGLSKSLLSRRLAVLDTGAGPNFTRLSELDSDEPAGMQKACLPDIRDANKRPIKSLGTIKLVVQHGNHVFRLSFIVCTTLASPVVLGCDYFDRFVETIRPKNREVELDEGFTVPI 261          
BLAST of Gcaud933.t1 vs. uniprot
Match: UPI001E1DB02D (uncharacterized protein LOC123543982 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB02D)

HSP 1 Score: 89.4 bits (220), Expect = 4.340e-17
Identity = 62/181 (34.25%), Postives = 93/181 (51.38%), Query Frame = 0
Query:   36 KVYADLGVPDQYMVRQLSVLDTGAGPNFLVESLLPPQ-VRSRMRSAPPIDIADANNRPLSTVGVIDLIVRIGRCVVQLDFLVGQKLAAPMILGCDFCDRFVDAIRPRDKTVEMVDGNTVPIVRKPLRRALKKQVSLPIAQQPLEKNR---PSTKLRVAQSVCISQQAQTLFRVSSATHRLQ 212
            KV A +GV    +    ++LDTGAGPN + E++LP    R R+   P   I  A  R L   G I L V++G   VQ  F+V   LAA  ILGC F DR V AI P++K V + +G+ +PI+              P+  +P    +   PSTK+RV++ + +  +++ +  V  A   L+
Sbjct:   29 KVSATVGVSATVLRPVSAILDTGAGPNLIKETILPEDWERYRIPGPPAFHIVGAGGRRLLQKGNITLTVQLGTIKVQARFIVVDGLAAECILGCQFIDRQVQAIHPKEKRVTLANGSVIPIIH---------DSGPPVCGRPSTPPKELPPSTKVRVSKMIVLPPRSECVVPVQCAAPGLR 200          
BLAST of Gcaud933.t1 vs. uniprot
Match: UPI001E1D3E38 (uncharacterized protein LOC123544752 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3E38)

HSP 1 Score: 85.1 bits (209), Expect = 1.310e-15
Identity = 56/166 (33.73%), Postives = 95/166 (57.23%), Query Frame = 0
Query:   42 GVPDQYMVRQLSVLDTGAGPNFLVESLLPPQ-VRSRMRSAPPIDIADANNRPLSTVGVIDLIVRIGRCVVQLDFLVGQKLAAPMILGCDFCDRFVDAIRPRDKTVEMVDGNTVPIVRKPLRRALKKQVSLPIAQQPLEKNRPSTKLRVAQSVCISQQAQTLFRVSS 206
            G+  + M   ++VLDTGAGPN + ES+LP    + R+ ++    I DAN + L   GV+ L +++G  VV+    V   L+ P ILGCDF DR V AI P+++ + + D   +P++  P ++ +         ++P   + PSTK+R+A++  ++  A+T+  V S
Sbjct:   39 GLTTRVMTPIVAVLDTGAGPNLIRESVLPDGWEKYRVHTSWNRRIVDANGKALKFRGVVQLALQLGELVVRTRLAVVSHLSVPCILGCDFIDRHVKAIVPKERRILLNDAKPIPLL-PPGQKTIPPGEKDSGEKKP-SSDTPSTKVRLARAATLAPGAETVVSVQS 202          
The following BLAST results are available for this feature:
BLAST of Gcaud933.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IQ80_9FLOR4.650e-2749.17Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
UPI001E1DB02D4.340e-1734.25uncharacterized protein LOC123543982 n=1 Tax=Merce... [more]
UPI001E1D3E381.310e-1533.73uncharacterized protein LOC123544752 n=1 Tax=Merce... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 50..158
e-value: 2.0E-5
score: 26.3
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 55..131
e-value: 1.60914E-8
score: 48.4868

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_212_length_36801_cov_4.990929contigNODE_212_length_36801_cov_4.990929:9972..10616 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud933.t1Gcaud933.t1Gracilaria caudata M_176_S67 malemRNANODE_212_length_36801_cov_4.990929 9972..10616 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud933.t1 ID=Gcaud933.t1|Name=Gcaud933.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=215bp
MTWTQNTLLFFVVRGYGLKITSSRKESLSWLNESKKVYADLGVPDQYMVR
QLSVLDTGAGPNFLVESLLPPQVRSRMRSAPPIDIADANNRPLSTVGVID
LIVRIGRCVVQLDFLVGQKLAAPMILGCDFCDRFVDAIRPRDKTVEMVDG
NTVPIVRKPLRRALKKQVSLPIAQQPLEKNRPSTKLRVAQSVCISQQAQT
LFRVSSATHRLQTV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom_sf