Gcaud9288.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9288.t1
Unique NameGcaud9288.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length91
Homology
BLAST of Gcaud9288.t1 vs. uniprot
Match: R7QRX6_CHOCR (RNA binding protein-like protein, putative (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRX6_CHOCR)

HSP 1 Score: 117 bits (294), Expect = 5.070e-32
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 0
Query:    1 MASDGTRLFVGNLSWGTDDDKLLRAFESMVGPGGVVEAKVIYDRYTGRSRGFGFVTLDSPDTASSAMEKMNGQEVDGRPIRVDMASSSRR 90
            MA +G RLFVGNLSWGT+D  L  AF+   G G VVEAKVI DRY+GRSRGFGFVT +S D A+ A + MNG EVDGR +RVD+ASSSRR
Sbjct:   59 MAEEGNRLFVGNLSWGTNDQSLHEAFDK--GSGTVVEAKVIIDRYSGRSRGFGFVTFNSADQAAEARDSMNGAEVDGRAVRVDVASSSRR 146          
BLAST of Gcaud9288.t1 vs. uniprot
Match: A0A1X6NL79_PORUM (RRM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NL79_PORUM)

HSP 1 Score: 112 bits (280), Expect = 1.380e-30
Identity = 58/91 (63.74%), Postives = 68/91 (74.73%), Query Frame = 0
Query:    1 MASDGTRLFVGNLSWGTDDDKLLRAFESMVG-PGGVVEAKVIYDRYTGRSRGFGFVTLDSPDTASSAMEKMNGQEVDGRPIRVDMASSSRR 90
            MA  G RLFVGNLSW T D+ +  AFE   G PG V+++KVI DR T RSRGFGFVT  S D AS+A+ KMNG +VDGRP+RVDMASS +R
Sbjct:    1 MAEQGCRLFVGNLSWSTTDESMREAFEQGSGVPGCVIDSKVILDRETNRSRGFGFVTFSSADLASAAIAKMNGMDVDGRPVRVDMASSRQR 91          
BLAST of Gcaud9288.t1 vs. uniprot
Match: A0A1X6P0L1_PORUM (RRM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0L1_PORUM)

HSP 1 Score: 109 bits (273), Expect = 1.800e-29
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 0
Query:    1 MASDGTRLFVGNLSWGTDDDKLLRAFESMVG--PGGVVEAKVIYDRYTGRSRGFGFVTLDSPDTASSAMEKMNGQEVDGRPIRVDMASS 87
            +A+ GTRLF+GNLSW T+D+ L RAFE  VG  PG V +AKVI DRYTGRSRGFGFVT  S   A +A+ +MN  +VDGR +RVD+AS+
Sbjct:    4 VAAPGTRLFIGNLSWNTNDESLRRAFEEGVGGGPGTVTDAKVIVDRYTGRSRGFGFVTFSSVQLAETAISRMNNADVDGRQVRVDVAST 92          
BLAST of Gcaud9288.t1 vs. uniprot
Match: A0A2V3ITU2_9FLOR (Glycine-rich RNA-binding protein RZ1A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITU2_9FLOR)

HSP 1 Score: 100 bits (249), Expect = 6.660e-26
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 0
Query:    1 MASD-GTRLFVGNLSWGTDDDKLLRAFESMVGPGGVVEAKVIYDRYTGRSRGFGFVTLDSPDTASSAMEKMNGQEVDGRPIRVDMASSSRR 90
            M+ D G RLFVGNL W T D  LL AFE + GP  V+EAKVI D Y+GRSRGFGFVT ++   A+ A+EKMNG ++ GR IRVD ASS RR
Sbjct:    1 MSDDQGNRLFVGNLPWSTTDQHLLEAFEQL-GP--VIEAKVIKDHYSGRSRGFGFVTFENSSHAAEAIEKMNGFDMGGRQIRVDRASSQRR 88          
BLAST of Gcaud9288.t1 vs. uniprot
Match: M2WZB1_GALSU (RNA-binding protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WZB1_GALSU)

HSP 1 Score: 98.2 bits (243), Expect = 9.060e-25
Identity = 48/84 (57.14%), Postives = 63/84 (75.00%), Query Frame = 0
Query:    3 SDGTRLFVGNLSWGTDDDKLLRAFESMVG-PGGVVEAKVIYDRYTGRSRGFGFVTLDSPDTASSAMEKMNGQEVDGRPIRVDMA 85
            S   RLF+GNLSW T  + L RAF++ +G    VV A V+ DRY+GRSRGFGFVT +SP+ A+SA+  +NG+E+DGR IRVD+A
Sbjct:    2 SQAVRLFIGNLSWKTSSEGLKRAFQNAIGVEASVVNAHVVMDRYSGRSRGFGFVTFESPEDAASAVNLLNGKELDGRAIRVDLA 85          
BLAST of Gcaud9288.t1 vs. uniprot
Match: F4P9N8_BATDJ (RRM domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4P9N8_BATDJ)

HSP 1 Score: 96.3 bits (238), Expect = 5.220e-24
Identity = 48/85 (56.47%), Postives = 67/85 (78.82%), Query Frame = 0
Query:    2 ASDGTRLFVGNLSWGTDDDKLLRAFESMVGPGGVVEAKVIYDRYTGRSRGFGFVTLDSPDTASSAMEKMNGQEVDGRPIRVDMAS 86
            A+ GT++FVGNLSWGTD++ L  AF      G VV++ V+ DR TGRSRGFGFVT  SP++AS+A++ MNGQ+++GR IRV++A+
Sbjct:    7 AAPGTKVFVGNLSWGTDNNSLADAFSQF---GEVVDSIVLKDRETGRSRGFGFVTFSSPESASAAVDAMNGQDLNGRNIRVNLAN 88          
BLAST of Gcaud9288.t1 vs. uniprot
Match: A0A832BYR2_9DELT (RNA-binding protein n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A832BYR2_9DELT)

HSP 1 Score: 95.5 bits (236), Expect = 2.340e-23
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 0
Query:    5 GTRLFVGNLSWGTDDDKLLRAFESMVGPGGVVEAKVIYDRYTGRSRGFGFVTLDSPDTASSAMEKMNGQEVDGRPIRVDMASSSRR 90
            G +LFVG LSWGTDD+ L  AFE+  GP  V EAKVI DR TGRSRGFGFVT D+ D  + AM++M+G+E+DGR IRV+ A +  R
Sbjct:    2 GNKLFVGGLSWGTDDNGLRAAFENF-GP--VTEAKVITDRETGRSRGFGFVTFDNADECAVAMKEMDGKELDGRAIRVNEAENKPR 84          
BLAST of Gcaud9288.t1 vs. uniprot
Match: A0A8H7EN54_9FUNG (RRM domain-containing protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EN54_9FUNG)

HSP 1 Score: 93.6 bits (231), Expect = 6.940e-23
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 0
Query:    7 RLFVGNLSWGTDDDKLLRAFESMVGPGGVVEAKVIYDRYTGRSRGFGFVTLDSPDTASSAMEKMNGQEVDGRPIRVDMAS 86
            +LFVG L+W T+DD L  AF +    G VV+A VI DR TGRSRGFGFVT DSPD A  A+E MN QE+DGR I+VD A+
Sbjct:    4 KLFVGGLAWATNDDNLYEAFSAY---GTVVQASVIKDRETGRSRGFGFVTYDSPDDADRAIEAMNNQELDGRNIKVDRAA 80          
BLAST of Gcaud9288.t1 vs. uniprot
Match: A0A7C5N2G4_9DELT (RNA-binding protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7C5N2G4_9DELT)

HSP 1 Score: 92.0 bits (227), Expect = 2.130e-22
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = 0
Query:    7 RLFVGNLSWGTDDDKLLRAFESMVGPGGVVEAKVIYDRYTGRSRGFGFVTLDSPDTASSAMEKMNGQEVDGRPIRVDMASSSR 89
            +LFVG LSW TDD  L  AFE     G + EAKVI DR TGRSRGFGFVT +SPD A+ AME MNG  +DGR ++VD+A   R
Sbjct:    4 KLFVGGLSWDTDDHGLRDAFEPY---GEIREAKVITDRETGRSRGFGFVTYNSPDDATKAMEAMNGASLDGRNLKVDVAQDRR 83          
BLAST of Gcaud9288.t1 vs. uniprot
Match: A0A1J5DPS7_9DELT (RNA-binding protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1J5DPS7_9DELT)

HSP 1 Score: 91.7 bits (226), Expect = 2.780e-22
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 0
Query:    7 RLFVGNLSWGTDDDKLLRAFESMVGPGGVVEAKVIYDRYTGRSRGFGFVTLDSPDTASSAMEKMNGQEVDGRPIRVDMASSSR 89
            +LFVG LSWGTDD  L +AFE     G V EAKVI DR +GRSRGFGFVT + P  A SA+  ++GQE+DGR IRV++A   +
Sbjct:    4 KLFVGGLSWGTDDGSLRKAFEEF---GEVSEAKVITDRDSGRSRGFGFVTFEEPAAAESAISALDGQELDGRAIRVNVAEEKK 83          
The following BLAST results are available for this feature:
BLAST of Gcaud9288.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QRX6_CHOCR5.070e-3267.78RNA binding protein-like protein, putative (Fragme... [more]
A0A1X6NL79_PORUM1.380e-3063.74RRM domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A1X6P0L1_PORUM1.800e-2961.80RRM domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A2V3ITU2_9FLOR6.660e-2661.54Glycine-rich RNA-binding protein RZ1A n=1 Tax=Grac... [more]
M2WZB1_GALSU9.060e-2557.14RNA-binding protein n=1 Tax=Galdieria sulphuraria ... [more]
F4P9N8_BATDJ5.220e-2456.47RRM domain-containing protein n=2 Tax=Batrachochyt... [more]
A0A832BYR2_9DELT2.340e-2360.47RNA-binding protein n=1 Tax=Nannocystis exedens Ta... [more]
A0A8H7EN54_9FUNG6.940e-2361.25RRM domain-containing protein n=1 Tax=Apophysomyce... [more]
A0A7C5N2G4_9DELT2.130e-2260.24RNA-binding protein n=1 Tax=Polyangiaceae bacteriu... [more]
A0A1J5DPS7_9DELT2.780e-2257.83RNA-binding protein n=2 Tax=unclassified Deltaprot... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 7..83
e-value: 1.9E-25
score: 100.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 8..81
e-value: 1.5E-18
score: 66.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 6..87
score: 19.314274
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..90
e-value: 1.1E-28
score: 102.1
NoneNo IPR availablePANTHERPTHR48024GEO13361P1-RELATEDcoord: 3..86
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_590_length_21324_cov_3.967503contigNODE_590_length_21324_cov_3.967503:13318..13590 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9288.t1Gcaud9288.t1Gracilaria caudata M_176_S67 malemRNANODE_590_length_21324_cov_3.967503 13318..13590 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9288.t1 ID=Gcaud9288.t1|Name=Gcaud9288.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=91bp
MASDGTRLFVGNLSWGTDDDKLLRAFESMVGPGGVVEAKVIYDRYTGRSR
GFGFVTLDSPDTASSAMEKMNGQEVDGRPIRVDMASSSRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf