Gcaud9280.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud9280.t1
Unique Name	Gcaud9280.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	412

Homology

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BLAST of Gcaud9280.t1 vs. uniprot
Match: A0A2V3J5J8_9FLOR (Transcription factor bHLH34 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5J8_9FLOR)

HSP 1 Score: 126 bits (317), Expect = 7.150e-28
Identity = 89/181 (49.17%), Postives = 99/181 (54.70%), Query Frame = 0

Query:  243 TMNHRFQQLAACLVISAGGKSDKESILAEAVEHVKKQAAMIQDLERRNHSLQVETRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYG-GGLKKRGKADMGTGGAG-----------GIDFKRDEMGMQRSDGGRAKKRSXXXXXXXXXXXXXXXXXXXXXXXXAKARKSEMTSA 411
            TMN+RFQQLAACLVISAGGKSDKESILAEAVEHVKKQAA+IQDLER+N +L VET D                                 R     G+KKRGK+D+  GG G            +DFKRDE+GM RS+G RAKKRS                        AKARKSEMTSA
Sbjct:  572 TMNNRFQQLAACLVISAGGKSDKESILAEAVEHVKKQAAVIQDLERQNQTLIVETGDLRAEKMELRQDKKFMMEERDRLKAEVEHLRAQLRVNSVPGMKKRGKSDVIGGGVGVVGGGGGMSSVNMDFKRDELGMGRSEG-RAKKRSKAGDDRRSDELKMASAAKRRDDAAAKARKSEMTSA 751

The following BLAST results are available for this feature:

BLAST of Gcaud9280.t1 vs. uniprot

BLAST of Gcaud9280.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J5J8_9FLOR	7.150e-28	49.17	Transcription factor bHLH34 n=1 Tax=Gracilariopsis...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 269..331
None	No IPR available	COILS	Coil	Coil	coord: 143..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 359..404
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 325..411
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 234..285 e-value: 8.6E-10 score: 48.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 231..278 e-value: 8.2E-10 score: 38.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 228..279 score: 13.103102
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 228..312 e-value: 1.2E-11 score: 46.6
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 224..295
IPR044579	Transcription factor bHLH11/121	PANTHER	PTHR47001	TRANSCRIPTION FACTOR BHLH121	coord: 223..328

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2798_length_4671_cov_3.073144	contig	NODE_2798_length_4671_cov_3.073144:721..1956 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9280.t1	Gcaud9280.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_2798_length_4671_cov_3.073144 721..1956 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud9280.t1 ID=Gcaud9280.t1|Name=Gcaud9280.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=412bp
MTYSSAAHGQPLYSNYALSQQQQQQQSAAQSARSAPTPPPSSAASLSVAA
PTGRDRRRNSRAATKRSRTPSRAAALSAVRAVSVAAAAANNQEHAALLQN
PNQAAAAAAAAAAAAAAAQQPHAQLAAAAVAQQPHGLSQSQQNSRHQQQQ
QQQQQQVAQQRQQKQDAQQQHEVATAQQAVQAQQQATTSQGGSGGGGVGG
GGACSTGGGGGSGGAAAGATTANAEEQTRPERKREREKRRRETMNHRFQQ
LAACLVISAGGKSDKESILAEAVEHVKKQAAMIQDLERRNHSLQVETRDL
RAEKAELRQDKKFMAEEHDRLKTEVQQLQNELRSYGGGLKKRGKADMGTG
GAGGIDFKRDEMGMQRSDGGRAKKRSKSNDDRRAEEYKMSAAAKRRDDAA
AKARKSEMTSA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom
IPR036638	HLH_DNA-bd_sf
IPR044579	bHLH11/121