Gcaud9279.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9279.t1
Unique NameGcaud9279.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length528
Homology
BLAST of Gcaud9279.t1 vs. uniprot
Match: R7QUZ6_CHOCR (Uncharacterized protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QUZ6_CHOCR)

HSP 1 Score: 590 bits (1522), Expect = 4.040e-203
Identity = 295/530 (55.66%), Postives = 383/530 (72.26%), Query Frame = 0
Query:    3 WQNLRAELRESSHRGAGVEDTPEDNVTLVALSYKGKSVKITRRMRLVDEKGRTKTDEG-LAQMDVEMTSDFVDDFRWSQIMRSCMALAKRRGTNKVRIWIDRLVMMNVDPEERSRVYELVDWEEFGLFAYAVCPVIRVYDAQERLYGTDFWRKLETVLGVAGRGIVVDDYMLRKYDDTIYFGPSMYEMLDNGISNIGGTGIYLRSVTLALATAVLTDGVTVSAVNEDLRTVEAASQWKAWALRTIAEGAYSRSHTSMMRKENAFVVSSKDFTKIVFWESLVCQCPMLIGRSYLDMSYQRSMFWRKCSNWDGILEWVGMLPGCCEVNDRSEITMFLNRNTELSMWASTTGHVASILTLRSPDLRYKRCLVVDLARFSTVRRGHVVGVAEATGLW-NGNILPPYLRFVQNPDVDQTALVGDYGVLYTYRQMGVKFACIPSTKQMSVAILLILSLICFILVIFSFIFIAFGILLLIIA---GIVFFLKTWPWVDRCDVGEAVFDNLLLHSLYGSGIKKQYRNLR-AEFEDIGW 526
            W+ LR ELR     G   +  PED   L+A+SYK K VKITRRM L+ E G    +EG L ++ ++MT DF DDFRWSQ++RSC+A+A+R G + VR+W+DRLVMM ++ E+R  +++L  WEEFGL  YAVC V+R+Y++ E  YGTDFWRKLETVLGVAG+G+ VDDYMLRKYD TIYFGP +Y+ L +G+  IGG G+Y+RS TLALATAVLTDGV+VSA +ED RT  +A++WK+WA+RTI EGAYS  H+S+M +E    +  + F  I FWES+V +   L GRSYLDMSYQRSM W+K S WDGI+EW+GM+P  C + DR++I  FLN+ ++++++ STTGHVASI+TL++ DLR KR LVVDLARFST R GHV  VAEATG+W N  ++P YL+ V +PD DQ A V D  +++ Y+QM V+F  + + K + V +   L LICF           FG  L++ A   G++F  + WPWVD CDVGEAVFDNLLLH+LY +GIKKQYR LR   F  IGW
Sbjct:  183 WERLRDELRSHQRVGEVPDGRPEDFSCLIAVSYKSKDVKITRRMLLLKEDGSPDKEEGILNEIQIQMTDDFFDDFRWSQLVRSCIAIARRDGKSHVRLWVDRLVMMGIEKEQREAIFKLTKWEEFGLLPYAVCHVVRLYESNEPYYGTDFWRKLETVLGVAGKGLFVDDYMLRKYDHTIYFGPKIYQRLGDGLCCIGGGGVYIRSTTLALATAVLTDGVSVSAAHEDRRTKRSATRWKSWAIRTITEGAYSSCHSSIMVEEEPSSIGYQQFLIITFWESMVSRSISLTGRSYLDMSYQRSMEWKKSSTWDGIVEWIGMMPESCIIGDRNQIMNFLNQQSDVNLYVSTTGHVASIITLKNDDLRDKRTLVVDLARFSTARSGHVTAVAEATGIWENSRVIPFYLKHVPDPDGDQLAEVQDGRIVFLYKQMKVEFFFMKTLKMICVVVGN-LILICF----------TFGGWLIVAAVELGLIF--RPWPWVDTCDVGEAVFDNLLLHALYDAGIKKQYRRLRNVPFNRIGW 699          
BLAST of Gcaud9279.t1 vs. uniprot
Match: R7Q3U1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3U1_CHOCR)

HSP 1 Score: 528 bits (1359), Expect = 1.750e-178
Identity = 272/549 (49.54%), Postives = 353/549 (64.30%), Query Frame = 0
Query:    3 WQNLRAELRESSHRGAGVEDTPEDNVTLVALSYKGKSVKITRRMRLVDEKGRTKTDEG-LAQMDVEMTSDFVDDFRWSQIMRSCMALAKRRGTNKVRIWIDRLVMMNVDPEERSRVYELVDWEEFGLFAYAVCPVIRVYDAQERLYGTDFWRKLETVLGVAGRGIVVDDYMLRKYDDTIYFGPSMYEMLDNGISNIGGTGIYLRSVTLALATAVLTDGVTVSAVNEDLRTVEAASQWKAWALRTIAEGAYSRSHTSMMRKENAFVVSSKDFTKIVFWESLVCQCPMLIGRSYLDMSYQRSMFWRKCSNWDGILEWVGMLPGCCEVNDRSEITMFLNRNTELSMWASTTGHVASILTLRSPDLRYKRCLVVDLARFSTVRRGHVVGVAEATGLWNGNILPPYLRFVQNPDVDQTALVGDYGVLYTYRQMGVKFA-------------------CIPSTKQM---SVAILLILSLICFILVIFSFIFIAFGILLLIIAGIVFFLKTWPWVDRCDVGEAVFDNLLLHSLYGSGIKKQYRNLRA-EFEDIGWN 527
            W + R E+R        +    ED+  L+ALSYKGK   I RRMR++   G    + G L Q  V+  SDFVDDFRWSQ++RSC+A+A+ +G + VRIWIDRLVMM V+ EE SR+Y L  WEEFGL  YA+CPVIRV+   E  YGTDFWRKLETVLGVAGRG+VVDDYMLRKYD TI++ PS+YE L +G+S IGG G+Y+RS TLALATA+LTDGV+V   NEDLRT   A  WKAWALRTIAEGAYS++H SMM  + AF +  + F  I FWES+V +   L+G+SYLDMS QRS+ WR  S WDG++EW GM+   C + DR EI  FL R +E+ ++ + +GHVAS + L SP   +KR LVVDL+RFST   G+V  VAEATGLW  ++ P YLR   +PD DQ   + +  +++TY  M  +                      +PS  ++   S+A L +L+++C+                       +F+ +WPWVD+ DVGEA+FDNL LH L+ SGIK  +R L+   +  I WN
Sbjct:  176 WNSFRNEIRAYQRVNDDLIGKKEDDALLIALSYKGKDENINRRMRIIKPDGSPDEESGVLMQEKVQRESDFVDDFRWSQVVRSCIAMARTQGKSHVRIWIDRLVMMGVEKEEISRLYGLSPWEEFGLLPYALCPVIRVFSGGEVYYGTDFWRKLETVLGVAGRGLVVDDYMLRKYDRTIFYSPSVYERLADGVSCIGGKGLYVRSTTLALATAILTDGVSVRKSNEDLRTKAGAIAWKAWALRTIAEGAYSKAHPSMMAGQEAFTIGMESFQTIAFWESIVSRSKALVGQSYLDMSIQRSVEWRSSSQWDGVIEWTGMVGSSCWIQDREEIVEFLTRQSEIRLYVTPSGHVASTVELTSPVNSHKRTLVVDLSRFSTATDGYVTAVAEATGLWGKSVTPWYLRDRVDPDNDQKGEISEEELIFTYEAMKREHVGRIFLRWVIPPLIFLDVILYVPSYLRVYFASLAALTVLAIMCY-----------------------YFVPSWPWVDKHDVGEALFDNLRLHCLFHSGIKTHFRLLKTVPYNQIKWN 701          
BLAST of Gcaud9279.t1 vs. uniprot
Match: R7QGR5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGR5_CHOCR)

HSP 1 Score: 214 bits (546), Expect = 2.360e-62
Identity = 113/276 (40.94%), Postives = 162/276 (58.70%), Query Frame = 0
Query:  259 MRKENAFVVSSKDFTKIVFWESLVCQCPMLIGRSYLDMSYQRSMFWRKCSNWDGILEWVGMLPGCCEVNDRSEITMFLNRNTELSMWASTTGHVASILTLRSPDLRYKRCLVVDLARFSTVRRGHVVGVAEATGLWNGNILPPYLRFVQNPDVDQTALVGDYGVLYTYRQMGVKFACIPSTKQMSVAILLILSLICFILVIFSFIFIAFGILLLIIAGIVF------FLKTWPWVDRCDVGEAVFDNLLLHSLYGSGIKKQYRNLRA-EFEDIGWN 527
            M ++ AF +  + F  I FWES+V +   L+G+SYLDMS QRS+ WR  S WDG++EW GM+   C + DR EI  FL R +E+ ++ + +GHVAS + L SP   +KR LVVDL+RFST   G+V  VAEATGLW  ++ P YLR   +PD DQ   + +  +++TY  M  +         + + +L+++  +    V+     +    + L+I   +F      F   WPWVD  DVGEA+FDNLLLH L+ SGIK  +R L+   +  I WN
Sbjct:    1 MARQEAFTIGMESFQTIAFWESIVSRSKALVGQSYLDMSIQRSVEWRSSSQWDGVIEWTGMVGSSCWIQDREEIVEFLTRQSEIRLYVTPSGHVASTVELTSPVNSHKRALVVDLSRFSTATDGYVTAVAEATGLWGKSVTPWYLRDRVDPDNDQKGEISEEKLIFTYEAMKREHVARSFLIWVGLPVLVLVLAVAMSGVVRVLFLVVLAFMGLVIISHLFPHFPLHFSPRWPWVDEHDVGEALFDNLLLHCLFRSGIKTHFRLLKTVPYNQIKWN 276          
The following BLAST results are available for this feature:
BLAST of Gcaud9279.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
R7QUZ6_CHOCR4.040e-20355.66Uncharacterized protein n=2 Tax=Chondrus crispus T... [more]
R7Q3U1_CHOCR1.750e-17849.54Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QGR5_CHOCR2.360e-6240.94Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 480..527
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 446..479
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..445
NoneNo IPR availableTMHMMTMhelixcoord: 447..481

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_694_length_19564_cov_4.578750contigNODE_694_length_19564_cov_4.578750:14654..16237 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9279.t1Gcaud9279.t1Gracilaria caudata M_176_S67 malemRNANODE_694_length_19564_cov_4.578750 14654..16237 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9279.t1 ID=Gcaud9279.t1|Name=Gcaud9279.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=528bp
MWWQNLRAELRESSHRGAGVEDTPEDNVTLVALSYKGKSVKITRRMRLVD
EKGRTKTDEGLAQMDVEMTSDFVDDFRWSQIMRSCMALAKRRGTNKVRIW
IDRLVMMNVDPEERSRVYELVDWEEFGLFAYAVCPVIRVYDAQERLYGTD
FWRKLETVLGVAGRGIVVDDYMLRKYDDTIYFGPSMYEMLDNGISNIGGT
GIYLRSVTLALATAVLTDGVTVSAVNEDLRTVEAASQWKAWALRTIAEGA
YSRSHTSMMRKENAFVVSSKDFTKIVFWESLVCQCPMLIGRSYLDMSYQR
SMFWRKCSNWDGILEWVGMLPGCCEVNDRSEITMFLNRNTELSMWASTTG
HVASILTLRSPDLRYKRCLVVDLARFSTVRRGHVVGVAEATGLWNGNILP
PYLRFVQNPDVDQTALVGDYGVLYTYRQMGVKFACIPSTKQMSVAILLIL
SLICFILVIFSFIFIAFGILLLIIAGIVFFLKTWPWVDRCDVGEAVFDNL
LLHSLYGSGIKKQYRNLRAEFEDIGWN*
back to top