Gcaud9247.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9247.t1
Unique NameGcaud9247.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length142
Homology
BLAST of Gcaud9247.t1 vs. uniprot
Match: A0A2V3J8F5_9FLOR (Eukaryotic translation initiation factor 4C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J8F5_9FLOR)

HSP 1 Score: 265 bits (676), Expect = 2.280e-89
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEVGEEGDDVVFDFETIDDI 141
            MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEARSLIKYGEIPDTTTINEG AEGE+GEEGDDVVFDFETIDDI
Sbjct:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEARSLIKYGEIPDTTTINEGTAEGELGEEGDDVVFDFETIDDI 141          
BLAST of Gcaud9247.t1 vs. uniprot
Match: R7QL76_CHOCR (Eukaryotic translation initiation factor 4C n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QL76_CHOCR)

HSP 1 Score: 251 bits (640), Expect = 7.030e-84
Identity = 131/141 (92.91%), Postives = 136/141 (96.45%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEVGEEGDDVVFDFETIDDI 141
            MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQV RMLGNGRCE+KCFDGTTRLCHIRGKLRKKVWVNAQDIVL+GLRDYQD KADIILKYSPDEAR+L+KYGEIPDTTTINE AAEGE GEEGDDVVFDFE ID+I
Sbjct:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVNRMLGNGRCESKCFDGTTRLCHIRGKLRKKVWVNAQDIVLVGLRDYQDDKADIILKYSPDEARNLMKYGEIPDTTTINENAAEGEDGEEGDDVVFDFEAIDEI 141          
BLAST of Gcaud9247.t1 vs. uniprot
Match: M2XFN2_GALSU (Eukaryotic translation initiation factor 4C n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XFN2_GALSU)

HSP 1 Score: 206 bits (524), Expect = 2.860e-66
Identity = 102/141 (72.34%), Postives = 115/141 (81.56%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEVGEEGDDVVFDFETIDDI 141
            MPKNKGKGGKNR        ++KREL+ KE+GQEYAQVTRMLGNGRCEA CFDGT RLCHIRGK+RKKVW+N+ DIVLIGLRDYQD KADIILKY+PDEAR+L   GEIPDTT INE     E GEEG++V FDF+ +D I
Sbjct:    1 MPKNKGKGGKNRRRGKNDNEEEKRELVMKEEGQEYAQVTRMLGNGRCEALCFDGTRRLCHIRGKMRKKVWINSGDIVLIGLRDYQDEKADIILKYNPDEARALKAQGEIPDTTKINE-----EEGEEGEEVTFDFDDVDAI 136          
BLAST of Gcaud9247.t1 vs. uniprot
Match: A0A7S0BT27_9RHOD (Eukaryotic translation initiation factor 4C n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BT27_9RHOD)

HSP 1 Score: 204 bits (520), Expect = 1.320e-65
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEVGEEGD-DVVFDFETIDDI 141
            MPKNKGKGGKNR        D+KREL+FKEDGQEYAQV RMLGNGRCEA CFDG  RLCHIRGK+RKKVWVN  DIVLIGLRD+QD KADIILKYSPDEARSL  Y EIPD+T +NE  ++ E  ++GD D+VFD++ +D+I
Sbjct:    1 MPKNKGKGGKNRRRGKNDNEDEKRELVFKEDGQEYAQVKRMLGNGRCEAACFDGRQRLCHIRGKMRKKVWVNTGDIVLIGLRDFQDQKADIILKYSPDEARSLKHYNEIPDSTALNEALSDNE--DQGDLDIVFDYDDVDEI 140          
BLAST of Gcaud9247.t1 vs. uniprot
Match: A0A1X6NYR6_PORUM (S1-like domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYR6_PORUM)

HSP 1 Score: 200 bits (509), Expect = 6.480e-64
Identity = 101/141 (71.63%), Postives = 113/141 (80.14%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEVGEEGDDVVFDFETIDDI 141
            M KNKGKGGKNR        D++RELIFKE+GQEYAQV RMLGNGRCE+ CFD   RLCHIRGKLRKKVWVNA DIVLIGLR+YQD KADIILKY+ DEARSL +YGEIPDTTTI+E A  GE     + VVF+F+ ID+I
Sbjct:    1 MGKNKGKGGKNRRRGKNDNDDERRELIFKEEGQEYAQVLRMLGNGRCESACFDSVKRLCHIRGKLRKKVWVNAGDIVLIGLREYQDEKADIILKYTADEARSLKQYGEIPDTTTIHENAEGGEGXXXXEGVVFEFDDIDEI 141          
BLAST of Gcaud9247.t1 vs. uniprot
Match: A0A7S1TBZ0_9RHOD (Eukaryotic translation initiation factor 4C n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TBZ0_9RHOD)

HSP 1 Score: 197 bits (501), Expect = 1.040e-62
Identity = 107/142 (75.35%), Postives = 122/142 (85.92%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGE-VGEEGDDVVFDFETIDDI 141
            MPKNKGKGGK  XXXXXXXX +KREL+FKEDGQEYAQVT+MLGNGRCE+ CFDG  RLCHIRGKLRKKVWVNA DIVL+GLR++QD KADIIL+Y+PDEAR L +YGE+P+ T INEG  EGE +G+E  DV F FE +DDI
Sbjct:    1 MPKNKGKGGKXXXXXXXXXXXEKRELVFKEDGQEYAQVTKMLGNGRCESLCFDGEKRLCHIRGKLRKKVWVNAGDIVLVGLREFQDEKADIILRYTPDEARHLKQYGELPEATKINEGVEEGEEMGDE--DVDFTFEDVDDI 140          
BLAST of Gcaud9247.t1 vs. uniprot
Match: A0A5N6QLR4_9ROSI (Eukaryotic translation initiation factor 4C n=2 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QLR4_9ROSI)

HSP 1 Score: 196 bits (499), Expect = 2.460e-62
Identity = 101/145 (69.66%), Postives = 111/145 (76.55%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEVGEE----GDDVVFDFETIDDI 141
            MPKNKGKGGKNR        DDKREL+FKEDGQEYAQV RMLGNGRCEA C DGT RLCHIRGK+ KKVW+ A DIVL+GLRDYQD KADIILKY PDEAR L  YGE+P+TT +NEG A G V E+     + VVF+ E ID I
Sbjct:    1 MPKNKGKGGKNRKRGKNEADDDKRELLFKEDGQEYAQVNRMLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADIILKYMPDEARLLKAYGELPETTRLNEGIAAGLVEEDEGVGSNYVVFEDEDIDKI 145          
BLAST of Gcaud9247.t1 vs. uniprot
Match: A0A7M7JIS4_VARDE (Eukaryotic translation initiation factor 4C n=3 Tax=Gamasina TaxID=1723665 RepID=A0A7M7JIS4_VARDE)

HSP 1 Score: 193 bits (491), Expect = 3.940e-61
Identity = 100/145 (68.97%), Postives = 113/145 (77.93%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEGEVGEEGDDVVFDF----ETIDDI 141
            MPKNKGKGGKNR         +KREL+FKEDGQEYAQV +MLGNGR EA CFDGT RLCHIRGKLRKKVW+N  DI+L+GLRDYQDAKAD+ILKY+PDEAR+L  YGE+P+   INE AA GE  EE D++ FD     E IDDI
Sbjct:    1 MPKNKGKGGKNRRRGKNENEAEKRELVFKEDGQEYAQVVKMLGNGRLEALCFDGTKRLCHIRGKLRKKVWINQGDIILVGLRDYQDAKADVILKYNPDEARNLKAYGELPEHAKINETAAFGEE-EEDDNIEFDDVSGDEDIDDI 144          
BLAST of Gcaud9247.t1 vs. uniprot
Match: UPI001E8D3CE9 (uncharacterized protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=UPI001E8D3CE9)

HSP 1 Score: 193 bits (490), Expect = 4.910e-61
Identity = 96/142 (67.61%), Postives = 114/142 (80.28%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEARSLIKYGEIPDTTTINEG-AAEGEVGEEGDDVVFDFETIDDI 141
            MPKNKGKGGKNR        D+KREL+FKEDGQEYAQV +MLGNGR EA+CFDGT RL HIRGK+RKKVW+N  DIVL+ LRD+QD KAD+I+KY+PDEAR+L +YGE+PDT  +NE   A GE  E GDDV+F+ + IDDI
Sbjct:    1 MPKNKGKGGKNRRRGKNENDDEKRELVFKEDGQEYAQVLKMLGNGRVEAQCFDGTKRLAHIRGKMRKKVWINQGDIVLLSLRDFQDDKADVIVKYTPDEARNLKQYGELPDTVKVNENETAYGE--ESGDDVLFEEDEIDDI 140          
BLAST of Gcaud9247.t1 vs. uniprot
Match: I1MKP2_SOYBN (Eukaryotic translation initiation factor 4C n=65 Tax=Pentapetalae TaxID=1437201 RepID=I1MKP2_SOYBN)

HSP 1 Score: 192 bits (489), Expect = 8.200e-61
Identity = 97/145 (66.90%), Postives = 108/145 (74.48%), Query Frame = 0
Query:    1 MPKNKGKGGKNRXXXXXXXXDDKRELIFKEDGQEYAQVTRMLGNGRCEAKCFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEARSLIKYGEIPDTTTINEGAAEG----EVGEEGDDVVFDFETIDDI 141
            MPKNKGKGGKNR        D+KREL+FKEDGQEYAQV RMLGNGRCEA C DGT RLCHIRGK+ KKVW+ A DI+L+GLRDYQD KAD+ILKY PDEAR L  YGE+PDTT +NEG   G    E G   D + F+ E ID I
Sbjct:    1 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDTTRLNEGIDAGLDEEEDGSGNDYIEFEDEDIDKI 145          
The following BLAST results are available for this feature:
BLAST of Gcaud9247.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J8F5_9FLOR2.280e-8998.58Eukaryotic translation initiation factor 4C n=1 Ta... [more]
R7QL76_CHOCR7.030e-8492.91Eukaryotic translation initiation factor 4C n=2 Ta... [more]
M2XFN2_GALSU2.860e-6672.34Eukaryotic translation initiation factor 4C n=1 Ta... [more]
A0A7S0BT27_9RHOD1.320e-6571.13Eukaryotic translation initiation factor 4C n=1 Ta... [more]
A0A1X6NYR6_PORUM6.480e-6471.63S1-like domain-containing protein n=1 Tax=Porphyra... [more]
A0A7S1TBZ0_9RHOD1.040e-6275.35Eukaryotic translation initiation factor 4C n=1 Ta... [more]
A0A5N6QLR4_9ROSI2.460e-6269.66Eukaryotic translation initiation factor 4C n=2 Ta... [more]
A0A7M7JIS4_VARDE3.940e-6168.97Eukaryotic translation initiation factor 4C n=3 Ta... [more]
UPI001E8D3CE94.910e-6167.61uncharacterized protein n=1 Tax=Filobasidium flori... [more]
I1MKP2_SOYBN8.200e-6166.90Eukaryotic translation initiation factor 4C n=65 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 28..110
e-value: 1.3E-46
score: 170.8
IPR001253Translation initiation factor 1A (eIF-1A)TIGRFAMTIGR00523TIGR00523coord: 14..109
e-value: 8.5E-34
score: 113.5
IPR001253Translation initiation factor 1A (eIF-1A)PANTHERPTHR21668EIF-1Acoord: 1..141
IPR001253Translation initiation factor 1A (eIF-1A)HAMAPMF_00216aIF_1Acoord: 16..110
score: 18.377594
IPR001253Translation initiation factor 1A (eIF-1A)CDDcd05793S1_IF1Acoord: 33..109
e-value: 1.04349E-42
score: 133.803
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 32..93
e-value: 7.7E-23
score: 80.1
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 22..96
score: 31.027206
NoneNo IPR availableGENE3D2.40.50.140coord: 2..141
e-value: 1.6E-57
score: 194.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
IPR018104Translation initiation factor 1A (eIF-1A), conserved sitePROSITEPS01262IF1Acoord: 41..63
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_384_length_27336_cov_4.346963contigNODE_384_length_27336_cov_4.346963:23240..24033 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9247.t1Gcaud9247.t1Gracilaria caudata M_176_S67 malemRNANODE_384_length_27336_cov_4.346963 23240..24033 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9247.t1 ID=Gcaud9247.t1|Name=Gcaud9247.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=142bp
MPKNKGKGGKNRRRGKNDNDDDKRELIFKEDGQEYAQVTRMLGNGRCEAK
CFDGTTRLCHIRGKLRKKVWVNAQDIVLIGLRDYQDAKADIILKYSPDEA
RSLIKYGEIPDTTTINEGAAEGEVGEEGDDVVFDFETIDDI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001253TIF_eIF-1A
IPR006196RNA-binding_domain_S1_IF1
IPR018104TIF_eIF-1A_CS
IPR012340NA-bd_OB-fold