Gcaud9239.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9239.t1
Unique NameGcaud9239.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length740
Homology
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BLAST of Gcaud9239.t1 vs. uniprot
Match: A0A2V3J4M5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4M5_9FLOR)

HSP 1 Score: 622 bits (1605), Expect = 7.330e-212
Identity = 336/722 (46.54%), Postives = 458/722 (63.43%), Query Frame = 0 
Query:   28 ATLQGQSQANRLRHGVAVSDLPSKFGKKGSAVLSRSVIPRSQIWNPAYRDPFIAEMFEDPARLDWFLADVIESEHHSDLITINGGFSCLDRGRSSSYALTWWASQNLTELTELRSEPGGAEIRSFSDIRSPDESEATVHDITQQCLAQRRADPSLRVVEHHGVHDGSGVAFRQFNSSPSPFIGNVNIFDEICAKRKAEDRSDPVVYR-NGIPIVFGITFDSGFRIKVPDNFTAEKTLALRVPMTPLAAITHHTVARMQEENVGEGEPKTNGWILTLLLLSAGLPLLLAIWIVSHFVSSTAYKSAMKLRELPVMKAISGTEHWLKQNKGTLVLHIVGAIILAAPLALGVAERQIDPRVYVEMTQGITVFYGSSQPDLSRDDQNPVAGAPFIVTSWISYRELNPSYHMHILLGSLALFLIAFYIIWRDIVSMSMFMPSCSPQGLGFSLPKLIGRLMLKLGAKKGEHEEYYTVLITLRQEYFDALRVDSTQSRHLLKAMLLLVNKGWRGRNSDQDQ---------EERCNSGAELYDRLMNSSAVDFSFVCSMKLDNKSRCDAMLSGIKRWWQELCPRQWEYIRRSLPGCAPLEEYHTRGQYPPDIGLILLRLGFLDYVRFIDKVYVKPSNDL--VVYGEDDTECFVVLSSATTSMDMAESPPLSEEFSRRDMAPIDFHFLERWRDAPSILRHWREGRIRIESIQMDGQRFGYAREDNFRPSALD 737
            AT+QGQS  N LRH VAVS+LPS+FGKKGSA+LSR V+P++ IW       F+ E+  +PARLDW++AD+     + + +T+N GFSCLDRG+SSS  LTWW S++++EL  L+  PGGA + S     S   +EA+V+DIT QCL QR  D SLR+VEHHG HDG+GV+F++  ++P   + +V +FD+I   R+ EDRS+ VVY    IPIV G+TFD+G RI   +NFT EKT  LRVPMTPLAAIT+HT AR++E  V EG+P T  WIL L  LS  L LL AIWIV  ++S+T  + AM+LR+ PV  A+ G E W    K  L+L+I G  IL AP AL V ER++DPRV++E+T G+TVFYGSSQ D S D QNPVAGAPFIVT W+S ++LN +Y   + + +     IA  I+W D+  M+  MP        FSL K IGRL L   + KG+    Y V ITL +++F AL  ++   R  LK +LLL N+ WR R ++  Q         E R ++  E+   LM++    F+ +C ++L N +R +AM+S I   W   CPR+WEYIRRSL GC P+E YHTR  YPPD+ L+LLRLG L+Y++FID+V V    D    +Y +DDT C + L+S  TS       P +   +  D  PI FH      + P  L+ WR+G +  + ++++ + FG+   D+   SA +
Sbjct:   28 ATVQGQSLVNNLRHAVAVSNLPSQFGKKGSALLSRHVVPKAHIWRDI--PLFMRELLSNPARLDWWVADL-----NGETVTLNAGFSCLDRGKSSSVPLTWWGSRSMSELESLQDAPGGAVLGS-----SKAATEASVNDITDQCLKQRTPDLSLRLVEHHGQHDGTGVSFQRVQTNPDSVVDDVTVFDQIATIRQNEDRSNDVVYHPKRIPIVVGLTFDTGMRIITYENFTTEKTQKLRVPMTPLAAITYHTGARLEEARVAEGQPPTTFWILALTQLSTSLGLLFAIWIVFRYISNTTIERAMELRDQPVHVAVRGGEKWTIIQKRDLLLNIGGVTILLAPAALAVVERKLDPRVFLEVTTGVTVFYGSSQGDFSSDSQNPVAGAPFIVTGWMSVQKLNSNYTALLWVLNALTIAIAARIVWLDLKRMNEVMPKNDSNRFNFSLFKRIGRLWLGWSSSKGDDTSEYVVCITLLEKHFRALS-NTRSDRTRLKELLLLANRNWRKRAAEPVQRKEGGMSSVERRADTSGEVCKVLMDTIGNRFALLCRIRLHNLNRFEAMMSRIGSVWSHRCPREWEYIRRSL-GCFPMEYYHTRALYPPDVALLLLRLGLLNYLKFIDEVNVLKIEDGGDFIYDDDDTNCVLALTS--TSQTFGVEAPRNGGDTEYDRTPIRFHTYHGREEIPDFLKMWRDGSLWTDVVRVNSENFGFVNIDSLTSSASE 733
The following BLAST results are available for this feature:
BLAST of Gcaud9239.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J4M5_9FLOR7.330e-21246.54Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 356..375
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..297
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 323..355
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 376..429
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 430..450
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 298..322
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 451..739
NoneNo IPR availableTMHMMTMhelixcoord: 297..319
NoneNo IPR availableTMHMMTMhelixcoord: 433..450
NoneNo IPR availableTMHMMTMhelixcoord: 355..374
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_384_length_27336_cov_4.346963contigNODE_384_length_27336_cov_4.346963:4780..6999 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9239.t1Gcaud9239.t1Gracilaria caudata M_176_S67 malemRNANODE_384_length_27336_cov_4.346963 4780..6999 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9239.t1 ID=Gcaud9239.t1|Name=Gcaud9239.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=740bp
MRVCTSKELLEILALACMLPILAPVALATLQGQSQANRLRHGVAVSDLPS
KFGKKGSAVLSRSVIPRSQIWNPAYRDPFIAEMFEDPARLDWFLADVIES
EHHSDLITINGGFSCLDRGRSSSYALTWWASQNLTELTELRSEPGGAEIR
SFSDIRSPDESEATVHDITQQCLAQRRADPSLRVVEHHGVHDGSGVAFRQ
FNSSPSPFIGNVNIFDEICAKRKAEDRSDPVVYRNGIPIVFGITFDSGFR
IKVPDNFTAEKTLALRVPMTPLAAITHHTVARMQEENVGEGEPKTNGWIL
TLLLLSAGLPLLLAIWIVSHFVSSTAYKSAMKLRELPVMKAISGTEHWLK
QNKGTLVLHIVGAIILAAPLALGVAERQIDPRVYVEMTQGITVFYGSSQP
DLSRDDQNPVAGAPFIVTSWISYRELNPSYHMHILLGSLALFLIAFYIIW
RDIVSMSMFMPSCSPQGLGFSLPKLIGRLMLKLGAKKGEHEEYYTVLITL
RQEYFDALRVDSTQSRHLLKAMLLLVNKGWRGRNSDQDQEERCNSGAELY
DRLMNSSAVDFSFVCSMKLDNKSRCDAMLSGIKRWWQELCPRQWEYIRRS
LPGCAPLEEYHTRGQYPPDIGLILLRLGFLDYVRFIDKVYVKPSNDLVVY
GEDDTECFVVLSSATTSMDMAESPPLSEEFSRRDMAPIDFHFLERWRDAP
SILRHWREGRIRIESIQMDGQRFGYAREDNFRPSALDNL*
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