Gcaud9216.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9216.t1
Unique NameGcaud9216.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length205
Homology
BLAST of Gcaud9216.t1 vs. uniprot
Match: A0A2V3ISB5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISB5_9FLOR)

HSP 1 Score: 170 bits (430), Expect = 6.060e-50
Identity = 102/218 (46.79%), Postives = 137/218 (62.84%), Query Frame = 0
Query:    1 MDGGFSLLLLVGTGALLLRPRDIPPMARVVGRAVGAAVRSLRIAKSAAEEVIAENVKQANDPNSELRTVGRGLRDSLSKFDSVTAAVRKDMADVPLSPRMWIQKGVRSLDQ---------AAQTGHTAKRDESDSSPVFTGGASAKHWRHNDRQMQTPLSRKSIHAANN--SSGVDFIARAIEEAALAQQRKRVLAG---PFQGDDQTKLNKPTTDET 204
            M  G S ++L+GTG LLLRPRD P +AR  GR +GA VRSLR+ K AAEEV+AEN++ ANDPNSE+  VGRGLRDSL+KFDS+ A ++KDM++VP+SPRM +QKG+RS+D+         A+ +G    R + D        A A H+            RKSI       S GVDFI R+IEEAA A+Q++++L G   P +    T + + T  +T
Sbjct:    1 MFEGGSFIVLIGTGILLLRPRDFPLIARGAGRLLGATVRSLRMTKQAAEEVVAENMQHANDPNSEMGLVGRGLRDSLTKFDSLAATLKKDMSNVPISPRMLLQKGMRSMDKSTHEIGSGNASDSGQEQTRAQVDPRQSDEDAAHATHY--------GTRIRKSIVGGERGTSCGVDFITRSIEEAAFAKQKEQILGGEARPTKAHLDTDVGESTRSDT 210          
BLAST of Gcaud9216.t1 vs. uniprot
Match: R7QP69_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP69_CHOCR)

HSP 1 Score: 94.7 bits (234), Expect = 1.090e-20
Identity = 69/196 (35.20%), Postives = 107/196 (54.59%), Query Frame = 0
Query:    6 SLLLLVGTGALLLRPRDIPPMARVVGRAVGAAVRSLRIAKSAAEEVI--AENVKQANDPNSELRTVGRGLRDSLSKFDSVTAAVRKDMADVPLSPRMWIQKGVRSL---DQAAQTGH-TAKRDESDSSPVFTGGASAKHWRHNDRQMQTPLSRKSIHAANNSSGVDFIARAIEEAALAQQRKRVLAGPFQGDDQTK 195
            +LLL+   G +LLRP D+P +AR  GRA G  VRSLR  + A +  +   E+V   +  N     VG GLR+SLSKFDS+   + +D+A    +P   + +G+      + A    H  ++R+++ SSP  T   S         ++ T + R        ++GVDFIAR+IEEAALA+Q++RV       ++Q++
Sbjct:    7 TLLLVAACGLVLLRPSDVPLLARYAGRATGIGVRSLRGLRDATDAAMKEGESVFAQHAGNG----VGSGLRESLSKFDSLRTTLSRDVAR--FAPFDKLNRGIAGAMRQNAAKPVLHGKSERNDATSSPNLTSTTS---------KLLTTVHRTETSTGEQTAGVDFIARSIEEAALARQQERVFGKTLHDENQSE 187          
The following BLAST results are available for this feature:
BLAST of Gcaud9216.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ISB5_9FLOR6.060e-5046.79Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QP69_CHOCR1.090e-2035.20Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..136
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..36
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_56_length_62400_cov_4.320371contigNODE_56_length_62400_cov_4.320371:6798..7412 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9216.t1Gcaud9216.t1Gracilaria caudata M_176_S67 malemRNANODE_56_length_62400_cov_4.320371 6798..7412 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9216.t1 ID=Gcaud9216.t1|Name=Gcaud9216.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=205bp
MDGGFSLLLLVGTGALLLRPRDIPPMARVVGRAVGAAVRSLRIAKSAAEE
VIAENVKQANDPNSELRTVGRGLRDSLSKFDSVTAAVRKDMADVPLSPRM
WIQKGVRSLDQAAQTGHTAKRDESDSSPVFTGGASAKHWRHNDRQMQTPL
SRKSIHAANNSSGVDFIARAIEEAALAQQRKRVLAGPFQGDDQTKLNKPT
TDET*
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