Gcaud9138.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9138.t2
Unique NameGcaud9138.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length214
Homology
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BLAST of Gcaud9138.t2 vs. uniprot
Match: A0A7S3E8D2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E8D2_9RHOD)

HSP 1 Score: 80.9 bits (198), Expect = 4.770e-15
Identity = 54/174 (31.03%), Postives = 91/174 (52.30%), Query Frame = 0 
Query:   40 AYMGIFSGVVLVFISVVGVCAVRVYHSRTLILFGYTLLCIATIVSLVFLAVVWLNLAKGNITQFGLEDRLHKAWQNTVILDK--ESACEIQNDFQCLGFRDGDCTVCSNSTSTGDACETNPRDCPVCEMISREKNVTEGCFDAIVDKLKSVHRPAGISCATIAVVLVVDMLFVY 211
            A +GI +G  LV IS+VG+ A +      ++   Y +L    + +L+F+AV+ L  A G      ++D    +W+ +V   +  E+ C+IQ ++QC GF D DC+ C  S  +    ET    CPVC   +       GC+DA+ D+  S++ P GI+ + +    V DM+ ++
Sbjct:   64 AIVGIVAGAALVVISIVGLLAFKGGCCGVVVKAVYVILLXXXLAALIFIAVITLKFATGKDGPL-IQDAALNSWEASVTNPEYTETTCQIQEEYQCAGFFDNDCSGCDPSIPS-TCTETQLMRCPVCNPDTDSS--LPGCYDAVTDEYNSLYLPIGITSSVLGGFAVADMIAIW 233
[Close]
BLAST of Gcaud9138.t2 vs. uniprot
Match: A0A1X6NUU9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUU9_PORUM)

HSP 1 Score: 73.9 bits (180), Expect = 1.860e-12
Identity = 61/219 (27.85%), Postives = 102/219 (46.58%), Query Frame = 0 
Query:    1 MFAGLTLISVSITLKVVDPLHNLKLSFTPNSSFNEYFSIAYMGIFSGVVLVFISVVGVCAVRVYHSRTLILFGYTLLCIATIVSLVFLAVVWLNLAKGNITQFGLEDRLHKAWQNTVILDKES----ACEIQNDFQCLGFRDGDCTVCSNS-TSTGDACETNPR-DCPVCEMISREKNVTEGCFDAIVDKLKSVHRPAGISCATIAVVLVVDMLFVYAL 213
            +  G   + V + L++      + L +T +   + + ++    +  G  L+  SV  +CAV      T+    + L  +    +LV +AVV L +A  N     +E  +  +W  TV     +    AC+IQ +F C GF DGDC  C N  T +G  C    +  CP C   S       GC+DAI+++ + +  P GI+ A +A V ++D+  V A+
Sbjct:   22 LLGGAGFLGVGLWLQLAQNGGPVNLKWTGSGFIDSFLTLGVAAMVIGGALLATSVCALCAVSRSCIGTIFRVMFVLATLVVTAALVLVAVVTLLIASNNRPD-AVETIVRDSWVRTVTSADPNTVAHACDIQANFGCAGFDDGDCDACVNGVTISGTPCTAEEQLRCPSCPS-SLTTPSPSGCYDAIIERTRKIFLPVGIAAAVVAGVALLDVFVVCAI 238
The following BLAST results are available for this feature:
BLAST of Gcaud9138.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3E8D2_9RHOD4.770e-1531.03Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6NUU9_PORUM1.860e-1227.85Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspanincoord: 3..211
e-value: 9.6E-14
score: 51.6
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 213..213
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 94..191
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..64
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..93
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 65..70
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 192..212
NoneNo IPR availableTMHMMTMhelixcoord: 36..58
NoneNo IPR availableTMHMMTMhelixcoord: 190..212
NoneNo IPR availableTMHMMTMhelixcoord: 71..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_415_length_26227_cov_4.944291contigNODE_415_length_26227_cov_4.944291:19036..19808 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9138.t2Gcaud9138.t2Gracilaria caudata M_176_S67 malemRNANODE_415_length_26227_cov_4.944291 19036..19808 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9138.t2 ID=Gcaud9138.t2|Name=Gcaud9138.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=214bp
MFAGLTLISVSITLKVVDPLHNLKLSFTPNSSFNEYFSIAYMGIFSGVVL
VFISVVGVCAVRVYHSRTLILFGYTLLCIATIVSLVFLAVVWLNLAKGNI
TQFGLEDRLHKAWQNTVILDKESACEIQNDFQCLGFRDGDCTVCSNSTST
GDACETNPRDCPVCEMISREKNVTEGCFDAIVDKLKSVHRPAGISCATIA
VVLVVDMLFVYAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018499Tetraspanin/Peripherin