Gcaud9131.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9131.t1
Unique NameGcaud9131.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length303
Homology
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BLAST of Gcaud9131.t1 vs. uniprot
Match: A0A2V3IKF0_9FLOR (Translocon-associated protein subunit alpha n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKF0_9FLOR)

HSP 1 Score: 391 bits (1005), Expect = 3.250e-134
Identity = 226/306 (73.86%), Postives = 251/306 (82.03%), Query Frame = 0 
Query:    1 MRVRHSFLLLLFALSVLLF-AVAAGDESSDHIESADEV--QDTEEDRIAREIEEQAXXXXXXXXXXXXXXXADALDEEADSARYNPERRHPLTDLPPAAQDVGIGHAFLTKFSETKSKESDTVVTLGEKIKTVIAFANQGRSLYHVWGVMGSLNMKHNFRIHVQNFTYNMVNKTVAPDGELSFSYSFTPNERLDIRPFQLALTVFYEAQGSTGKAIRGHSTTFFNTTIATEPGSQSMSNGLFLLIVALVLGASGGGFFVFKKMEATKTAKPEMGTEVDSKSEWLEEHQAMM-TGGGRARSRPNAKR 302
            MRV    LLL+  L+ +LF A+ A    S H    DE    DTE +RIAREIEE  XXXXXXXXXXXXXXXADALDE+AD ARY+PERRHPL+DLPP + DV +GHAFLTKFSETKSK SD VVTLGE IKTVIAFAN GR  YHVWGVMGSLNM  NF+IHVQNFTY M+NKTV P  ELSFSY+FTP+ERLDIRPFQLALT FYEAQGSTG AIRG+STTFFN T+ATEPG Q+MSNGLF+LIV +++GA+ GGFF FKKMEA KTAK EMGTE  SK+EWLEEH+AM+ TGGGRARSR  AKR
Sbjct:    1 MRVGRFSLLLIVLLAAILFTAINAEAHDSAHEVDVDESGGDDTESERIAREIEEXXXXXXXXXXXXXXXXXADALDEDADIARYDPERRHPLSDLPPPSSDVSVGHAFLTKFSETKSKASDIVVTLGETIKTVIAFANHGRGSYHVWGVMGSLNMNDNFKIHVQNFTYAMINKTVEPQEELSFSYAFTPHERLDIRPFQLALTAFYEAQGSTGNAIRGYSTTFFNATVATEPGLQTMSNGLFMLIVVVLIGAAIGGFFAFKKMEAVKTAKTEMGTEDSSKNEWLEEHEAMVKTGGGRARSRAAAKR 306
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BLAST of Gcaud9131.t1 vs. uniprot
Match: A0A653BG23_CALMS (Translocon-associated protein subunit alpha n=1 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653BG23_CALMS)

HSP 1 Score: 57.0 bits (136), Expect = 8.040e-6
Identity = 38/136 (27.94%), Postives = 62/136 (45.59%), Query Frame = 0 
Query:  114 SKESDTVVTLGEKIKTVIAFANQGRSLYHVWGVMGSLNMKHNFRIHVQNFTYNMVNKTVAPDGELSFSYSFTPNERLDIRPFQLALTVFY-EAQGSTGKAIRGHSTTFFNTTIATEPGSQSMSNGLFLLIVALVLG 248
            S  S   +  G  ++ ++ F N+G   + V  +  S     +F  ++QNF+    +KTV P+ E +F YSF P+E    RPF L + + Y +A G+  +         FN T+      + +    F L V L  G
Sbjct:   74 SGSSQMEIPAGLPVEFLVGFRNKGEEDFIVESLEASFRYPMDFSFYIQNFSAIGYHKTVTPNHEATFHYSFIPSEAFAGRPFGLNINLMYRDASGNPFQEA------VFNETVQIIELEEGLDGETFFLYVFLAAG 203
The following BLAST results are available for this feature:
BLAST of Gcaud9131.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IKF0_9FLOR3.250e-13473.86Translocon-associated protein subunit alpha n=1 Ta... [more]
A0A653BG23_CALMS8.040e-627.94Translocon-associated protein subunit alpha n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 46..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..302
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..282
NoneNo IPR availablePANTHERPTHR12924TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNITcoord: 7..287
NoneNo IPR availablePANTHERPTHR12924:SF0TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT ALPHAcoord: 7..287
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 237..257
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 258..302
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..236
NoneNo IPR availableTMHMMTMhelixcoord: 7..24
NoneNo IPR availableTMHMMTMhelixcoord: 235..257
IPR005595Translocon-associated protein (TRAP), alpha subunitPFAMPF03896TRAP_alphacoord: 7..282
e-value: 5.3E-20
score: 71.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_415_length_26227_cov_4.944291contigNODE_415_length_26227_cov_4.944291:4193..5174 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9131.t1Gcaud9131.t1Gracilaria caudata M_176_S67 malemRNANODE_415_length_26227_cov_4.944291 4193..5174 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9131.t1 ID=Gcaud9131.t1|Name=Gcaud9131.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=303bp
MRVRHSFLLLLFALSVLLFAVAAGDESSDHIESADEVQDTEEDRIAREIE
EQAAAAVEEAAEEEEDDDADALDEEADSARYNPERRHPLTDLPPAAQDVG
IGHAFLTKFSETKSKESDTVVTLGEKIKTVIAFANQGRSLYHVWGVMGSL
NMKHNFRIHVQNFTYNMVNKTVAPDGELSFSYSFTPNERLDIRPFQLALT
VFYEAQGSTGKAIRGHSTTFFNTTIATEPGSQSMSNGLFLLIVALVLGAS
GGGFFVFKKMEATKTAKPEMGTEVDSKSEWLEEHQAMMTGGGRARSRPNA
KR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005595TRAP_alpha