Gcaud8969.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8969.t1
Unique NameGcaud8969.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length460
Homology
BLAST of Gcaud8969.t1 vs. uniprot
Match: A0A2V3IRG1_9FLOR (General transcription factor IIH subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRG1_9FLOR)

HSP 1 Score: 692 bits (1786), Expect = 6.450e-248
Identity = 356/463 (76.89%), Postives = 401/463 (86.61%), Query Frame = 0
Query:    1 MPSYPSSQAVPLSATLFTDIAEWSKQNPDLLDELYTSPYAVQCIFRSLPPLARLYVTRLMYLPEHESPPTIEAFRKSLRRRQRALDRHEAALKALKALHVFVQASDDRIQQPH----FSLHPVFARELRRSVTSEIQPVLGGGRGGSDPHELDNFAADRLESILNFLVESTNDSSVPSSIIDALLHIGVLEQRREGLNITSAGFRFLLKDTSAQLWILLRSVLSSMFPANVEALSLVFEMAFACAGRSYDIENLTMTQQTLLRELHNLGVVIMDRASFRVTLVGTRLLANASRSSAGPNDTMTLTKTAGEIQIFVETNFRVYAYTTSAFQINLLALFTHMRYRLPSMVVGHLTRDAVRKALMNGITADQIIGYLNSHAHPRMKKGIIPANVSDEIRLWEAEQGRVQSRPGVLLSDFHHGFESTLSYSRDLGAVLWSSPERGMLVVAKEYFDQVKSFIKSNGIQ 459
            MPSY  SQ+VPLSAT+FTDI  WS  NP LLD LY SPYAVQ +FRSLPPLARLYVTRL+YLPE+ES PT+EAFRKSLRRRQRALDRH+AA++AL+ L VF  +        H      LHP FARELRRSV++ I  V GGG G SDP +LD+FAADRLESILNFLVESTN +S+PS IIDAL+HIGVLEQRREGL ITSAGF FLLKDTSAQLWILLRSVLSSMFPA+VEAL+LVF++  + AGR YDI NL+ TQQ L+RELH+LG+VI+++ +F+VT+VG RLLANA+RSSAGP+D MTLTK+AGEIQ+FVETNFRVYAYTTS FQINLLALFTHMRYRLPSMVVGHLTRDAVRKALMNGITADQIIGYLN+HAHPRMKKG IPANVSDEIRLWEAEQ RVQ++PGVLLSDF HGFES LSY+RDL AVLWS+PER MLVV+K  FDQVK FI+ +GIQ
Sbjct:    1 MPSYLRSQSVPLSATIFTDITHWSATNPQLLDALYQSPYAVQSVFRSLPPLARLYVTRLLYLPENESTPTLEAFRKSLRRRQRALDRHDAAIRALRELRVFTTSPSGLNASLHDPSKIVLHPTFARELRRSVSNSIPSVFGGGSGSSDPKDLDSFAADRLESILNFLVESTNHNSIPSGIIDALVHIGVLEQRREGLTITSAGFHFLLKDTSAQLWILLRSVLSSMFPADVEALTLVFQLGVSTAGRFYDISNLSATQQELIRELHHLGIVILNKNTFQVTVVGVRLLANATRSSAGPSDGMTLTKSAGEIQVFVETNFRVYAYTTSVFQINLLALFTHMRYRLPSMVVGHLTRDAVRKALMNGITADQIIGYLNAHAHPRMKKGTIPANVSDEIRLWEAEQDRVQTKPGVLLSDFSHGFESVLSYARDLNAVLWSAPEREMLVVSKNTFDQVKRFIRDSGIQ 463          
BLAST of Gcaud8969.t1 vs. uniprot
Match: R7QRW5_CHOCR (General transcription factor IIH subunit 4 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRW5_CHOCR)

HSP 1 Score: 462 bits (1188), Expect = 6.690e-157
Identity = 248/474 (52.32%), Postives = 339/474 (71.52%), Query Frame = 0
Query:    6 SSQAVPLSATLFTDIAEWSKQNPDLLDELYTSPYAVQCIFRSLPPLARLYVTRLMYLPEHESPPTIEAFRKSLRRRQRALDRHEAALKALKALHVFVQASD----DRIQQPHFSLHPVFARELRRSVTSEIQPVLGGGRGGSD----------PHELDNFAADRLESILNFLVESTNDSSVPSSIIDALLHIGVLEQRREGLNITSAGFRFLLKDTSAQLWILLRSVLSSMFPAN-VEALSLVFEMAFACAGRSYDIENLTMTQQTLLRELHNLGVVIM-DRASFRVTLVGTRLLANASRSSAGPN---DTMTLTKTAGEIQIFVETNFRVYAYTTSAFQINLLALFTHMRYRLPSMVVGHLTRDAVRKALMNGITADQIIGYLNSHAHPRMKKGIIPANVSDEIRLWEAEQGRVQSRPGVLLSDFH--HGFESTLSYSRDLGAVLWSSPERGMLVVAKEYFDQVKSFIKSNGI 458
            S  A  LS ++F D+A+ + ++  L+  LY SP+AVQC+FR+LPP+ARLYV R++YLP ++   ++++FR+ LRRRQRA DRH++A+ ALKALHV V+          ++    L+  FA  LRRSVT  ++PV GG     +            ++D F+A +L+ ILNFLVES   ++   +++ AL  +G+LE +  GL ITS+GF+FLLKD+ AQLW+LLRS++++ F    ++A  L+F+++FAC G+ Y   +L+  Q+ L+ ELH LG+V + + A+FR T VG RLL +ASR  +GP    D  ++ K AGEI+IFVETNFRVYAYTTS FQ NLLALFTHMRY+LPSMVVGHLTRDAVR+ALM+GIT DQIIGYLN+HAHPRMK+G+IP+NVSDEIRLWEAEQ RVQ+ PGVLLSDF     FE  +SY+ DLGA +WS  +R  ++VA+E +  V+ F+ SN +
Sbjct:    3 SDSAPGLSQSIFEDLADAAAKSKRLITRLYESPHAVQCVFRALPPIARLYVARIIYLPSNQEV-SVDSFRQCLRRRQRAYDRHDSAILALKALHVLVEVETLVDGPGRKETRLQLNDKFAENLRRSVTYGVEPVFGGPCEDIEMVDVESREVVTKKMDEFSAAKLDRILNFLVESNGSNAPGGTVVQALAQVGILESKSIGLCITSSGFQFLLKDSFAQLWVLLRSIVNTQFRGEELDAWELIFKLSFACPGKEYRDPHLSKCQRELMAELHELGIVRLGEDATFRPTTVGVRLLTSASRIQSGPASTADASSMVKIAGEIEIFVETNFRVYAYTTSNFQTNLLALFTHMRYKLPSMVVGHLTRDAVRRALMSGITGDQIIGYLNAHAHPRMKRGVIPSNVSDEIRLWEAEQDRVQTTPGVLLSDFESQEAFEKVMSYAYDLGASVWSDRDRLKVIVAREAYGSVRGFMNSNDL 475          
BLAST of Gcaud8969.t1 vs. uniprot
Match: A0A5J4YU96_PORPP (General transcription factor IIH subunit 4 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YU96_PORPP)

HSP 1 Score: 263 bits (673), Expect = 2.570e-79
Identity = 178/482 (36.93%), Postives = 270/482 (56.02%), Query Frame = 0
Query:   16 LFTDIAEWSKQNPDLLDELYTSPYAVQCIFRSLPPLARLYVTRLMYLPEHE-SPPTIEA-FRKSLRRRQRALDR------------HEAALKALKALHVFVQASDDRIQQPHFSLHPVFARELRRSVTSEIQPVLGGGRGGSDP--------HELDNFAADRLESILNFLVESTNDS---SVPSS-IIDALLHIGVLEQRREGLNITSAGFRFLLKDTSAQLWILLRSVLSSMFPAN----VEALSLVFEMAFACAGRSYDIENLTMTQQTLLRELHNLGVVIMDRA--SFRVTLVGTRLLANASRSSAGPNDTMTLTKTAGEIQIFVETNFRVYAYTTSAFQINLLALFTHMRYRLPSMVVGHLTRDAVRKALMNGITADQIIGYLNSHAHPRMKKGIIPANVSDEIRLWEAEQGRVQSRPGVLLSDFHHGFESTLSY------SRDLGAVLWSSPERGMLVVAKEYFDQVKSFIKSNGIQ 459
            +F ++ +WS+ +   +   + S +A   + R +P LARL V R++       S   + A F +   R   A  R            H   ++ L  LHV V+  +  +  P + L P FA  + + +T+ ++P        +            L+ FA  R E +L+FLV S ++S   S PS  +++ALL   +LE   EGL IT  GF+FLLKDT AQ+W LL  +L  +FPA     V+A+ L+F++A A  G+ Y +  L   Q   L+    LG+V +     +F VT +G  L+ N+ +     +    L+   GE+Q+ VETNFRVYAYT+S+FQI LL+LF  MRYRLP++VVGH+T+ +VR A+ NGITA+Q++ +LN+H HP ++K  IP  VSDE+ LWEAEQ RV++   V++     GFESTLS+      + ++ A+LWS+P R MLVV  E  + VK +I+   ++
Sbjct:   18 MFQELEQWSRSD---MQRAFRSEHAAHAVLRCVPNLARLVVMRMLLGSSRTCSASELSAWFAQDGHRSDYAKSRSGGQTPIATGHSHTRVVEPLLRLHV-VRLVESAVP-PFYELDPAFADRMDQILTANVRPPFDSEHESNSVVLDSPALVQRLEVFAKRRWERVLHFLVGSDSESASVSGPSDELVNALLKTRLLENCEEGLRITHVGFQFLLKDTYAQIWSLLACMLEHLFPAGSQHRVDAMGLLFQIALAVPGKPYKLSCLDANQSRFLKCCDELGLVQVGEKEQAFCVTRMGVNLV-NSKQEDVASHSGGHLSVDMGELQLIVETNFRVYAYTSSSFQIALLSLFLDMRYRLPNLVVGHITKSSVRAAMSNGITAEQLVRFLNAHLHPMVEKACIPPCVSDELYLWEAEQDRVRTDDAVMID----GFESTLSFDALTTHANEIDALLWSNPRRLMLVVKAEKAEGVKQYIREQALR 489          
BLAST of Gcaud8969.t1 vs. uniprot
Match: A0A7S3ENT9_9RHOD (General transcription factor IIH subunit 4 n=6 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ENT9_9RHOD)

HSP 1 Score: 240 bits (612), Expect = 3.430e-72
Identity = 144/325 (44.31%), Postives = 201/325 (61.85%), Query Frame = 0
Query:  147 ELDNFAADRLESILNFLV----ESTNDSSVPSSIIDALLHIGVLEQRREGLNITSAGFRFLLKDTSAQLWILLRSVLSSMFPANVEA----LSLVFEMAFACAGRSYDIENLTMTQQTLLRELHNLGVVIMDRA---SFRVTLVGTRLLANASRSSAGPNDTMTLTKTAGEIQIFVETNFRVYAYTTSAFQINLLALFTHMRYRLPSMVVGHLTRDAVRKALMNGITADQIIGYLNSHAHPRMKKGIIPANVSDEIRLWEAEQGRVQSRPGVLLSDFH--HGFESTLSYSRDLGAVLWSSPERGMLVVAKEYFDQVKSFIKSNGI 458
            EL++F   + ES+L+FLV     STN +  P +II AL  I +L    EGL ITS GF+FLL+D  +Q+W+LL  +++S+   +++A    L  +FEM ++  G  Y I +L       +  L  LG+V        +F  T VG RL+AN    S G  D   ++ + G  +I VETNFR+YAYTTS  Q++L+++F HMR RLP++ VGH+T ++VR AL NGI+A+QII YLN+HA  R + G IP+NVS  IRLWEAE+ RV+++ GVL   F     F+    Y+ ++ A LWSS     LVVA    DQVK+FIKSN I
Sbjct:    8 ELESFGQRKWESVLHFLVGMDPNSTNKTKPPKAIIKALRRINLLNDTGEGLKITSKGFQFLLRDPYSQVWVLLLELVNSVSNGSIKAKREVLEFLFEMNYSEPGAGYKISDLKDGPVAAMEALVALGLVYKPSRQSDTFFPTKVGRRLVANTG--SGGRTDEKNVSASLGTCEIIVETNFRLYAYTTSKLQVDLISMFVHMRTRLPNLAVGHITNESVRMALRNGISAEQIIAYLNAHASSRCRSGRIPSNVSQMIRLWEAEKDRVKTKSGVLFDKFETEEAFDMVEKYAFEMDAKLWSSRILKTLVVADRAADQVKTFIKSNRI 330          
BLAST of Gcaud8969.t1 vs. uniprot
Match: UPI001455B061 (general transcription factor IIH subunit 4-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455B061)

HSP 1 Score: 240 bits (613), Expect = 8.760e-71
Identity = 156/441 (35.37%), Postives = 242/441 (54.88%), Query Frame = 0
Query:   30 LLDELYTSPYAVQCIFRSLPPLARLYVTRLMYLPEHESPPTIEAFRKSLRRRQRALDRHEAALKALKALHVFVQASDDRIQQ--PHFSLHPVFARELRRSVTSEIQPVLGGGRGGSDPH-----ELDNFAADRLESILNFLVESTNDSSVPSSIIDALLHIGVLEQRREGLN-ITSAGFRFLLKDTSAQLWILLRSVLS---SMFPANVEALSLVFEMAFACAGRSYDIENLTMTQQTLLRELHNLGVVIMDRAS---FRVTLVGTRLLANASRSSAGPNDTMTLTKTAGEIQIFVETNFRVYAYTTSAFQINLLALFTHMRYRLPSMVVGHLTRDAVRKALMNGITADQIIGYLNSHAHPRM--KKGIIPANVSDEIRLWEAEQGRVQSRPGVLLSDF--HHGFESTLSYSRDLGAVLWSSPERGMLVVAKEYFDQVKSF 452
            +LD+LY  P     +FR LP LA+ YV R++++ +     ++E++ +        L++H+   + L  L ++    D+ +    P + L+P+F   LR ++    +P  G G+   D +      L+ +A DR E +L+FLV S  D S+   I   L H G+++   +G   IT +GF+FLL DT++Q+W  +   L    S     V+ALS +F ++F+  G+ Y  E++T +Q   L+ L  LG+V   +     F  T +   L +  S  S         T +  E  I VETN+RVYAYT S  Q+ +L LFT M YR P++ VG LTRD+V+ A+ NGITA+QI+ YL +HAHP M  +  I+PA +SD+IRLWE E+ R+  + GV+ + F     FE    Y++DLG ++W +P +  LVV     D VK F
Sbjct:   25 VLDKLYNHPATCLAVFRELPTLAKHYVNRVLFVEQPVRKASVESWVQKAH-----LEKHKKCAQILSDLRIW---HDNTLPGGLPGWQLNPIFKANLRIALLGGGKPWSGTGKTAPDKNAKDIDSLNRYAMDRWELVLHFLVGSKGDESLSPDIAGVLTHSGLMKISEDGQPVITPSGFQFLLLDTASQVWFFMLQYLETAESRVLDLVDALSFLFRLSFSTLGKDYSCEDMTESQLQFLQHLRELGLVFQRKRKCMRFYPTSLAISLASGISSVS---------TDSHREGFIVVETNYRVYAYTESDLQVEILGLFTQMLYRFPNLAVGALTRDSVQAAVSNGITAEQILHYLRTHAHPEMLSRIPIVPATISDQIRLWELEKDRLTFQSGVVYNQFLSSQEFEVLRDYAKDLGVLMWENPGKRTLVVTPTGHDDVKKF 448          
BLAST of Gcaud8969.t1 vs. uniprot
Match: A0A6P7VQ62_IXOSC (General transcription factor IIH subunit 4 n=16 Tax=Ixodidae TaxID=6939 RepID=A0A6P7VQ62_IXOSC)

HSP 1 Score: 237 bits (604), Expect = 1.920e-69
Identity = 159/465 (34.19%), Postives = 254/465 (54.62%), Query Frame = 0
Query:    7 SQAVPLSATLFTDIAEWSKQ-NPDLLDELYTSPYAVQCIFRSLPPLARLYVTRLMYLPEHESPPTIEAFRKSLRRRQRALDRHEAALKALKALHVFVQASDDRIQQPHFSLHPVFARELRRSVTSEIQP-----VLGGGRGGSDPHELDNFAADRLESILNFLVESTNDSSVPSSIIDALLHIGVLEQRREGLN---ITSAGFRFLLKDTSAQLWILLRSVLSSMFPAN---VEALSLVFEMAFACAGRSYDIENLTMTQQTLLRELHNLGVVIM-DRASFRVTLVGTRLLANASRSSAGPNDTMTLTKTAGEIQIFVETNFRVYAYTTSAFQINLLALFTHMRYRLPSMVVGHLTRDAVRKALMNGITADQIIGYLNSHAHPRMKKG--IIPANVSDEIRLWEAEQGRVQSRPGVLLSDF--HHGFESTLSYSRDLGAVLWSSPERGMLVVAKEYFDQVKSFIK 454
            S + P S+    D+  + K  +P  LD+LYT P     +FR LP ++R Y+ RLM++ +      + ++ +     Q+ +  H  +L+AL ALH++  +S      P +SL  VF + ++ ++    QP      L   + G D   LD +A +R E +L+F+V       + +  +  LLH G+++   E  +   IT  GF+FLL DT++Q+W  +   L ++       VE L+ +F+++F   G+ Y  E ++ +    L+ L   G+V    R S R     TRL  N +   +G  +T   +  AG   I VETN+RVYAYT S  Q+ LLALF  + YR P++VVG LTR++VR+AL +GIT++QII +L  HAHP  +K   ++P  + D++RLWE E+ R   R GVL S F     F+   +Y+ DLG ++W +P + ++VV +   D+VK F K
Sbjct:    2 SLSAPSSSLKCNDLHAYLKTLSPATLDQLYTHPATCLAVFRELPIISRHYIMRLMFVDQPVPQAVVSSWNE-----QKYVKEHLESLEALTALHIWADSSLPG-GLPGWSLSGVFRKNIQIALLGGGQPWAVYSTLEKDKHGRDAQFLDRYAMERWECVLHFMVGCHTKEGISADAVRILLHAGLMKSEEEEGSAPLITMEGFQFLLMDTASQVWHFVLQYLDTLESRGLNLVECLTFLFQLSFLTLGKDYSTEGMSESLLVFLQHLREFGLVYQRKRRSGR--FYPTRLAINLA---SGLKETNLRSYEAG--YIVVETNYRVYAYTDSQLQVALLALFCELMYRFPNLVVGVLTRESVRQALRSGITSNQIIRFLQMHAHPEAQKQSPVVPPTIMDQLRLWELERDRFNFREGVLYSQFISQSDFQLLRNYASDLGVLIWDNPSKRVMVVNRNGHDEVKRFWK 453          
BLAST of Gcaud8969.t1 vs. uniprot
Match: A0A6P7SKC6_OCTVU (General transcription factor IIH subunit 4 n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7SKC6_OCTVU)

HSP 1 Score: 234 bits (597), Expect = 1.870e-68
Identity = 166/448 (37.05%), Postives = 242/448 (54.02%), Query Frame = 0
Query:   29 DLLDELYTSPYAVQCIFRSLPPLARLYVTRLMYLPEHESPPTIEAFRKSLRRRQRALDRHEAALKALKALHVFVQASDDRI--QQP------HFSLHPVFARELRRSVTSEIQPVLGGGRGGSDPHE-----LDNFAADRLESILNFLVESTNDSSVPSSIIDALLHIGVLEQRREGLN--ITSAGFRFLLKDTSAQLWILLRSVLSSMFPAN---VEALSLVFEMAFACAGRSYDIENLTMTQQTLLRELHNLGVVIMDRASFRVTLVGTRLLANASRSSAGPNDTMTLTKTAGEIQIFVETNFRVYAYTTSAFQINLLALFTHMRYRLPSMVVGHLTRDAVRKALMNGITADQIIGYLNSHAHPRM--KKGIIPANVSDEIRLWEAEQGRVQSRPGVLLSDF--HHGFESTLSYSRDLGAVLWSSPERGMLVVAKEYFDQVKSFIK 454
            ++LD+LY  P     +FR LP LA+  V R++++ E   P  + A          A   HE   +A+ A+      +D R+  +QP       F L+  F   ++ ++    QP  GGG    D H      LDN+A DR E +L+F+V S++   V   I   LLH G+++   E     IT  GF+FLL DTS+Q+W  +   L+++       VE+LS +F+++F+  G+ Y  E ++  Q  LL+ L   G+V   +   +     T+L  N +   +  +D         +  I VETN+RVYAYT S  QI LLALFT M YR P+MVVG +TRD+VR AL  GI+ADQII +L SHAH +M  K  +IP  V+D+IRLWE E+ R +   GVL + F     FE    Y+RDLG ++W  P + ++VVA+   D+VK F K
Sbjct:   25 NVLDKLYNHPATCLAVFRELPELAKHCVMRILFV-EQPVPQAVVAH-------WVANKHHEEQKQAMAAV------TDLRVWHEQPLPGGMMGFILNQTFRMNMKTALLGGGQPWTGGGSLPPDKHAKDIAFLDNYAQDRWECVLHFMVGSSD--CVSRDIKWVLLHAGLMKAESEDQAPVITPNGFQFLLMDTSSQVWFFMLQYLNTLATRGMDLVESLSFLFQLSFSIFGKDYTTEGMSEAQLRLLQHLREFGLVYQRKRKSQ-RYYPTKLAINLAAGLSQVSD-----NAIRQGFIVVETNYRVYAYTDSQLQIALLALFTEMIYRFPNMVVGQITRDSVRSALSCGISADQIIHFLKSHAHEKMLEKMPVIPPTVTDQIRLWELERDRFKFTDGVLYNQFLSQSDFELLRDYARDLGVLVWDKPSKRVMVVARNGHDEVKRFWK 450          
BLAST of Gcaud8969.t1 vs. uniprot
Match: A0A2R6WYY1_MARPO (RNA polymerase II transcription factor B subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WYY1_MARPO)

HSP 1 Score: 232 bits (591), Expect = 1.720e-67
Identity = 152/443 (34.31%), Postives = 251/443 (56.66%), Query Frame = 0
Query:   31 LDELYTSPYAVQCIFRSLPPLARLYVTRLMYLPEHESPPTIEAFRKSLRRRQRALDRHEAALKALKALHVFVQASDDRIQQPHFSLHPVFARELRR------SVTSEIQPVLGGGRGGSDPHELDNFAADRLESILNFLVEST--NDSSVP--SSIIDALLHIGVLE--QRREGLNITSAGFRFLLKDTSAQLWILLRSVLSSMFPANV---EALSLVFEMAFACAGRSYDIENLTMTQQTLLRELHNLGVVIMDRASFRVTLVGTRLLANASRSSAGPNDTMTLTKTAGEIQIFVETNFRVYAYTTSAFQINLLALFTHMRYRLPSMVVGHLTRDAVRKALMNGITADQIIGYLNSHAHPRMKKG--IIPANVSDEIRLWEAEQGRVQSRPGVLLSDFH--HGFESTLSYSRDLGAVLWSSPERGMLVVAKEYFDQVKSFIK 454
            LDELY SP+  Q + RSLPPLA+ YV RL+++    S  +I+ +         AL++H+ A+  L+ L V ++A++ R ++  + L+P   ++L+        V  E  P     R  S   +L+N+A  + E++L  LV S     S+VP  S++       G++   + +E   IT AGF+FLL DT++QLW ++R  ++S     +   E +S + E+ F   G  Y++  L+  QQ +++EL  LGV+ +   +     + T+L +N S S +  +         GE  + VETNFR+YAYTTS  Q  +L LF  + Y+LP++VVG LT+++V  A  +GI++D++I +L+ HAHP   K   ++P  V+D+IRLWE ++ RVQ  P  +  +F     FE+  +Y+RD+GA+LW  P    LV   E  +++++FI+
Sbjct:   23 LDELYGSPWTCQAVVRSLPPLAKQYVLRLLFVEAAVSSKSIQDWALP-----DALNKHKVAIDKLEQLRVLIEATERR-KEVSYKLNPRLQKQLQDVLKTGGGVPRESLPASFAARVPSLV-DLENYAMKQWEAVLLQLVSSAFAEASTVPMNSTLTATFQRAGLITTPKGKEPPKITDAGFQFLLMDTNSQLWQIVREYVASAEDRGMDSAELISFLLELGFLNIGEPYNLNTLSPMQQNVIKELAALGVLQIQSGTKDRWFIPTKLASNLSASISETSGVQ-----PGEGFVVVETNFRIYAYTTSKLQAEILRLFVRLEYQLPNLVVGSLTKESVSTAFASGISSDEMISFLSKHAHPHAAKKTPVVPETVTDQIRLWENDRNRVQMSPAYMYKEFPTVETFEAVDNYARDIGALLWDEPSTQRLVGKAERHEEMRNFIR 453          
BLAST of Gcaud8969.t1 vs. uniprot
Match: A0A2U1LYY2_ARTAN (RNA polymerase II transcription factor B subunit 2 n=5 Tax=Asteraceae TaxID=4210 RepID=A0A2U1LYY2_ARTAN)

HSP 1 Score: 230 bits (587), Expect = 5.190e-67
Identity = 146/448 (32.59%), Postives = 247/448 (55.13%), Query Frame = 0
Query:   31 LDELYTSPYAVQCIFRSLPPLARLYVTRLMYLPEHESPPTIEAFRKSLRRRQRALDRHEAALKALKALHVFVQASDDRIQQPHFSLHPVFARELRRSVTSEIQPVLGGGRGGSDP------------HELDNFAADRLESILNFLVESTNDSSVPSSIIDALLHI---GVLEQR-REGLNITSAGFRFLLKDTSAQLWILLRSVLSSMFPANVEA---LSLVFEMAFACAGRSYDIENLTMTQQTLLRELHNLGVVIMDRASFRVTLVGTRLLANASRSSAGPNDTMTLTKTAGEIQIFVETNFRVYAYTTSAFQINLLALFTHMRYRLPSMVVGHLTRDAVRKALMNGITADQIIGYLNSHAHPRMKKGI--IPANVSDEIRLWEAEQGRVQSRPGVLLSDF--HHGFESTLSYSRDLGAVLWSSPERGMLVVAKEYFDQVKSFIKS 455
            LD+LY + +  + I RSLPPLA+ YV +L+Y+   + P T  + ++ +        +H  A+  L  L VF +  D R ++  + L+P+F   LR       + ++ GG    +P             ELDN+AA + E  L  L+ S        SI  +++ +   G+L QR REG  +T +GF+FLL DT+AQLW ++R  +S+     V++   +S + E++F   G +Y+I  L   Q+T +++L +LG++ + +       + T+L  N S S +  +          +  + VETNFR+YAY+TS     +L LF+ + Y+LP+++VG +T++ + KA  NGITADQII +L  +AHPR+ + +  +P NV+D+IRLWE++  RV+  P   L DF     FE+   ++R+  ++LW   ++  L+V  E +  +K F+ +
Sbjct:   23 LDKLYENAFICEAILRSLPPLAKKYVLQLLYI---DVPVTANSLQEWVL--ADGASKHRVAVDRLIQLRVFTETVD-RKKEATYRLNPMFQMNLR-------EHIVHGGVLPREPMAANITVRLPSLEELDNYAAQQWECFLLHLINSAEAEVTTKSISASMMKVFQRGLLSQRDREGSRLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDSADLISFLLELSFHVTGEAYNINTLDDVQRTTVKDLADLGLIKLQQGRKDSWFIPTKLATNLSISLSDASSRK-------QGYVVVETNFRLYAYSTSKLHCEILKLFSRVEYQLPNLIVGSITKENLYKAFANGITADQIISFLQQNAHPRVAERVPSVPENVTDQIRLWESDLNRVEMTPAHFLDDFPSRDVFEAACDFAREYSSLLWEDSKKMRLIVKTEIYAHMKEFLNN 450          
BLAST of Gcaud8969.t1 vs. uniprot
Match: UPI001EB0608E (general transcription factor IIH subunit 4-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EB0608E)

HSP 1 Score: 230 bits (587), Expect = 5.600e-67
Identity = 156/442 (35.29%), Postives = 238/442 (53.85%), Query Frame = 0
Query:   30 LLDELYTSPYAVQCIFRSLPPLARLYVTRLMYLPEHESPPTIEAFRKSLRRRQRALDRHEAALKALKALHVFVQASDDRIQ--QPHFSLHPVFARELRRSVTSEIQPVLGGGRGGSDPHE-----LDNFAADRLESILNFLVESTNDSS-VPSSIIDALLHIGVL-EQRREGL-NITSAGFRFLLKDTSAQLWILLRSVLSSMFPAN---VEALSLVFEMAFACAGRSYDIENLTMTQQTLLRELHNLGVVIMDRASFRVTLVGTRLLANASRSSAGPNDTMTLTKTAGEIQIFVETNFRVYAYTTSAFQINLLALFTHMRYRLPSMVVGHLTRDAVRKALMNGITADQIIGYLNSHAHPRMKKG--IIPANVSDEIRLWEAEQGRVQSRPGVLLSDF--HHGFESTLSYSRDLGAVLWSSPERGMLVVAKEYFDQVKSFIK 454
            +LD LY+ P     +FR LP L R YV R++++ +  S   +  +  +  + +     H  A+K+L  L V+    D  +    P + L+  F + L+ ++     P  GGG    D H      LD +A +R E +L+F+V S+  +  V   IID LLH G++ E+  E L +I+ AGF+FLL DT +Q+W  +   L S+       VE LS +F+++F+  G+ Y  E ++ +Q   L+ L   G+V   +   +     TRL  N +      N     T +     + VETN+RVYAYT S  Q  LLALF  M YR P+M V +L+RD+VR AL  GITA+QII +L SHAHP M K   +IP  V D++RLWE E+ R +   GV+ + F   + FE    Y++DL  ++W +P + +++V++   D VK F K
Sbjct:   23 ILDRLYSHPATCLAVFRELPELGRHYVMRILFVEQPVSQTVVGQWISNKHQEE-----HRFAVKSLSDLRVW---HDQPLPGGMPGWLLNHTFRKNLKIALLGGGDPWTGGGPLPQDKHAKDVSFLDKYALERWECVLHFMVGSSEGTDGVSKDIIDVLLHSGLMKEETSEPLPSISPAGFQFLLLDTGSQVWFFMLQYLESVEARGMDLVECLSFLFQLSFSTLGKDYCTEGMSESQLKFLQHLREFGLVYQRKRKSQ-RYYPTRLAINIASGLTTFN-----TDSHSSGYLVVETNYRVYAYTDSPLQTALLALFCQMLYRFPNMAVANLSRDSVRAALTRGITAEQIINFLRSHAHPEMMKTTPVIPLTVCDQVRLWELERDRFKFTDGVMYNQFLSQNDFELLRDYAQDLNVLVWDNPSKRVMIVSRGGHDDVKRFWK 450          
The following BLAST results are available for this feature:
BLAST of Gcaud8969.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRG1_9FLOR6.450e-24876.89General transcription factor IIH subunit 4 n=1 Tax... [more]
R7QRW5_CHOCR6.690e-15752.32General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A5J4YU96_PORPP2.570e-7936.93General transcription factor IIH subunit 4 n=1 Tax... [more]
A0A7S3ENT9_9RHOD3.430e-7244.31General transcription factor IIH subunit 4 n=6 Tax... [more]
UPI001455B0618.760e-7135.37general transcription factor IIH subunit 4-like n=... [more]
A0A6P7VQ62_IXOSC1.920e-6934.19General transcription factor IIH subunit 4 n=16 Ta... [more]
A0A6P7SKC6_OCTVU1.870e-6837.05General transcription factor IIH subunit 4 n=2 Tax... [more]
A0A2R6WYY1_MARPO1.720e-6734.31RNA polymerase II transcription factor B subunit 2... [more]
A0A2U1LYY2_ARTAN5.190e-6732.59RNA polymerase II transcription factor B subunit 2... [more]
UPI001EB0608E5.600e-6735.29general transcription factor IIH subunit 4-like n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..98
NoneNo IPR availableGENE3D3.30.70.2610coord: 385..457
e-value: 4.1E-18
score: 67.5
IPR004598Transcription factor TFIIH subunit p52/Tfb2PFAMPF03849Tfb2coord: 25..376
e-value: 1.9E-87
score: 293.6
IPR004598Transcription factor TFIIH subunit p52/Tfb2PANTHERPTHR13152TFIIH, POLYPEPTIDE 4coord: 25..455
IPR040662Transcription factor Tfb2, C-terminal domainPFAMPF18307Tfb2_Ccoord: 389..454
e-value: 2.1E-17
score: 63.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_8_length_96899_cov_4.406888contigNODE_8_length_96899_cov_4.406888:60950..62329 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8969.t1Gcaud8969.t1Gracilaria caudata M_176_S67 malemRNANODE_8_length_96899_cov_4.406888 60950..62329 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8969.t1 ID=Gcaud8969.t1|Name=Gcaud8969.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=460bp
MPSYPSSQAVPLSATLFTDIAEWSKQNPDLLDELYTSPYAVQCIFRSLPP
LARLYVTRLMYLPEHESPPTIEAFRKSLRRRQRALDRHEAALKALKALHV
FVQASDDRIQQPHFSLHPVFARELRRSVTSEIQPVLGGGRGGSDPHELDN
FAADRLESILNFLVESTNDSSVPSSIIDALLHIGVLEQRREGLNITSAGF
RFLLKDTSAQLWILLRSVLSSMFPANVEALSLVFEMAFACAGRSYDIENL
TMTQQTLLRELHNLGVVIMDRASFRVTLVGTRLLANASRSSAGPNDTMTL
TKTAGEIQIFVETNFRVYAYTTSAFQINLLALFTHMRYRLPSMVVGHLTR
DAVRKALMNGITADQIIGYLNSHAHPRMKKGIIPANVSDEIRLWEAEQGR
VQSRPGVLLSDFHHGFESTLSYSRDLGAVLWSSPERGMLVVAKEYFDQVK
SFIKSNGIQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004598TFIIH_p52/Tfb2
IPR040662Tfb2_C