Gcaud8948.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8948.t1
Unique NameGcaud8948.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length230
Homology
BLAST of Gcaud8948.t1 vs. uniprot
Match: A0A2V3J3V3_9FLOR (Protein SDE2-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3V3_9FLOR)

HSP 1 Score: 288 bits (737), Expect = 2.340e-95
Identity = 151/229 (65.94%), Postives = 178/229 (77.73%), Query Frame = 0
Query:    1 MAPVNVLLAGLPGAGTVNLRIGDHNRALHHGDLTFAINCATGLPSHTFYLCQSGILLRPESLVTKPGEHTAFVQLFIRRALPGGKGGFGALLKGSSATKKTTNFDACRDLQGRRLRDVRREQALRTALQQRDDQSSRQRQGAKPPSPVKRKRAASENDETQQDEGLEEKLDGIAGEVRKAVTSGLRSLASRKKRQRVSDETAAHPTQNSPPAPMDWIRGYDDVSSDSDS 229
            MAPVNVLLAGLPGA T+NLRIGDH   L H DLT AINCATGL +  FYLCQ+G LL P S+VT+PGEHTAF+ LF RRALPGGKGGFGALLKGSS TKKTTNFD+CRDLQGRRLRDVRREQALRTAL Q  +Q++ +     P SP KRKR  +EN+   + E L + L+ +A EV+KAV SG RSLA+R+KR+RVSD      T +S P  M+W++ YDD+SSDS+S
Sbjct:    1 MAPVNVLLAGLPGARTINLRIGDHRFPLRHEDLTSAINCATGLRAEAFYLCQAGALLHPRSVVTRPGEHTAFINLFFRRALPGGKGGFGALLKGSSGTKKTTNFDSCRDLQGRRLRDVRREQALRTALNQSTEQTAGRE--VNPASPHKRKRVPTENETVPRKERLGDTLENVADEVQKAVASGFRSLAARRKRRRVSDTPPLESTGHSQPTAMEWMKAYDDISSDSES 227          
BLAST of Gcaud8948.t1 vs. uniprot
Match: R7QNX9_CHOCR (Sde2_N_Ubi domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNX9_CHOCR)

HSP 1 Score: 163 bits (413), Expect = 2.560e-46
Identity = 113/240 (47.08%), Postives = 148/240 (61.67%), Query Frame = 0
Query:    1 MAPVNVLLAGLPGA-GTVNLRIGDHNRALHHGDLTFAINCATGLPSHTFYLCQSGILLRPESLVTKPGEHTAFVQLFIRRALPGGKGGFGALLKGSSA-TKKTTNFDACRDLQGRRLRDVRREQALRTALQQRDDQSSRQRQGAKPPSPVKR-------KRAASENDETQQDEGLEEKLDGIAGEVRKAVTSGLRSLASRKKRQRVSD--ETAAHPTQNSPPAPMDWIRGYDDVSSDSDS 229
            MAPVNV+++GLP +  T+ L++GD + AL    ++ A+  ATG+P  +F+L     LLRP + VT PG+HTAFV + +RRALPGGKGGFGA+L+G +A +KKT+NFDACRDLQGRRLR VR E ALR   + R        QG    +  KR        RAA   D++   E LE+ ++ IAG V  AV   + +L SR+KR R S   ET A P +       DW+  YD VSS SDS
Sbjct:    1 MAPVNVVISGLPSSPSTLCLQVGDSHAALPASLVSDALIAATGIPPSSFFLRSHAGLLRPHAHVTVPGQHTAFVAMCLRRALPGGKGGFGAMLRGGAAPSKKTSNFDACRDLQGRRLRHVRDEIALREFARARRSGEGAS-QGTDMHTVRKRCREETDQARAAELEDKSVDPEELEQDMERIAGSVESAVADAVGTLQSRQKRLRTSPLPETRASPVRAD-----DWMMDYDGVSS-SDS 233          
BLAST of Gcaud8948.t1 vs. uniprot
Match: A0A1I8PJT2_STOCA (Replication stress response regulator SDE2 n=1 Tax=Stomoxys calcitrans TaxID=35570 RepID=A0A1I8PJT2_STOCA)

HSP 1 Score: 73.9 bits (180), Expect = 3.340e-12
Identity = 73/209 (34.93%), Postives = 100/209 (47.85%), Query Frame = 0
Query:   27 ALHHGDLTFAINCATGLPSHTFYLCQSGILLRPESLVTKPGEHTAFVQLFIRRALPGGKGGFGALLKGSSAT-KKTTNFDACRDLQGRRLRDVRREQALRTALQQRDDQSSRQRQGAKPPSPVKRKRAASENDETQQDE------GLEEKL-DGIAGEVRKAVTSGLRSLASRKKRQRVSDETAAHPTQNSPPAPMDWIRGYDDVSSDS 227
            A+ + DL   +     L   +FYL Q+G     + L + P E    V ++IR  L GGKGGFG++L+   A  +KTTN +ACRDL GRRLRD+  E+ L+  L   D Q  R+R+  +       K  A    E +  E       L EK+ D +    +KA TSG +    RK     S + AA      P     WI   DD+S DS
Sbjct:    5 AITYQDLISYLIKTKSLVPESFYLEQNG-----KRLQSDPTED---VPVYIRFRLLGGKGGFGSMLRAIGAQIEKTTNREACRDLSGRRLRDINEEKRLKAWL---DKQGEREREAEERKKRKIEKLLAVPKHEFKDKEYEEARSKLTEKVCDAVEEGFKKAATSGPKDNLKRKHEPSTSQQAAAKAKAKKPAL---WID--DDLSGDS 197          
BLAST of Gcaud8948.t1 vs. uniprot
Match: A0A182NM24_9DIPT (Replication stress response regulator SDE2 n=1 Tax=Anopheles dirus TaxID=7168 RepID=A0A182NM24_9DIPT)

HSP 1 Score: 73.6 bits (179), Expect = 4.430e-12
Identity = 75/228 (32.89%), Postives = 110/228 (48.25%), Query Frame = 0
Query:   21 IGDHNRALHHGDLTFAINCATGLPSHTFYLCQSGILLRPESLVTKPGEHTAFVQLFIRRALPGGKGGFGALLKGSSAT-KKTTNFDACRDLQGRRLRDVRREQALRTALQQR------DDQSSRQRQGAKPPSPVKRKRAASENDETQQ------DEGLEEKLD-GIAGEVRKAV---------TSGLRSLASRKKRQRVSDETAAHPTQNSPPAPMDWIRGYDDVSS 225
            +G  N   H  DL   I   TGL    +Y  Q+G  + P    T   +    V L I   LPGGKGGFG++L+   A  +KTTN +ACRDL GRRLRD+  E+ L+  L+++      D++   +R+ AK  S  K +    E + T+       DE ++E L   +A EV + V         T    S A  +KR+  + +      +NS    + W+ G DD+SS
Sbjct:   13 LGRENNTEH--DLAHVIQRCTGLLPSEYYCTQNGRRVSPTDADTLRPD----VPLRICERLPGGKGGFGSMLRAIGAQIEKTTNREACRDLSGRRLRDINEEKRLKAYLEKQQEAAGEDERVKAERKIAKLLSKPKHEFEDKEYEHTRSELVVAADEAIQEGLQKALALEVGQPVPGVEAAGCKTEATTSQADTRKRKHPATKAGVKAKKNSA---ILWL-GADDLSS 230          
BLAST of Gcaud8948.t1 vs. uniprot
Match: A0A7N0UAW8_KALFE (Sde2_N_Ubi domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UAW8_KALFE)

HSP 1 Score: 74.3 bits (181), Expect = 7.480e-12
Identity = 47/112 (41.96%), Postives = 59/112 (52.68%), Query Frame = 0
Query:   16 TVNLRIGDHNRALHHGDLTFAINCATGLPSHTFYLCQSGILLRPESLVTKPGEHTAFVQLFIRRALPGGKGGFGALLKGSSAT---KKTTNFDACRDLQGRRLRDVRREQAL 124
            T+NLR       L    L   I    G+P    YL     LLRPE+L+        F  + +   L GGKGGFG+LL+G++     KKT NFDACRD+ GRRLR V  E+ L
Sbjct:   23 TLNLRFTTPT--LSAETLIGRIRTLVGIPDDLLYLVSQNRLLRPETLIVADPGTRLFPSVSLVARLLGGKGGFGSLLRGAATKAGHKKTNNFDACRDMSGRRLRHVNAEKKL 132          
BLAST of Gcaud8948.t1 vs. uniprot
Match: UPI0015B2E755 (replication stress response regulator SDE2 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015B2E755)

HSP 1 Score: 72.8 bits (177), Expect = 2.920e-11
Identity = 63/200 (31.50%), Postives = 100/200 (50.00%), Query Frame = 0
Query:   31 GDLTFAINCATGLPSHTFYLCQSGILLRPESLVTKPGEHTAFVQLFIRRALPGGKGGFGALLKGSSAT-KKTTNFDACRDLQGRRLRDVRREQALRTALQQRDDQSSRQRQGAKPPSPVKR-KRAASENDETQQDEGLEEKLDGIAGEVRKAVTSGLRSLASRKKRQRVSDETAAHPTQNSPPAPMDWIRGYDDVSSDSD 228
            GDLT  ++   G+P   FY+  +G LL  +  +   G +       +   L GGKGGFG++L+   A  +KTTN +ACRDL GRRLRDV  E+ +   L+++ D     R+  K    ++R +R  +E      D   +++   I+  + +++  GL+  AS     RVS +  +    +    P  W  G DD+SS  D
Sbjct:   24 GDLTHVLSRERGIPHTDFYVKSNGRLLGEDEELQTGGWYR------LEPRLCGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKEMAEWLKKQAD-----REAEKEQRRLERLQRKLAEPKHYFNDPEYDKQCQDISERMEESIKKGLQ--ASSSGTSRVSRKRPSPHGADPGKRPRIWQSGLDDLSSSED 210          
BLAST of Gcaud8948.t1 vs. uniprot
Match: A0A2V0P341_9CHLO (Ubiquitin-like domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P341_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 4.140e-11
Identity = 45/92 (48.91%), Postives = 53/92 (57.61%), Query Frame = 0
Query:   36 AINCATGLPSHTFYLCQSGILLRPESLVTKPG-EHTAFVQLFIRRALPGGKGGFGALLKGSSATKKTT-NFDACRDLQGRRLRDVRREQALR 125
            A+   TG+P+    LC  G LL        P   H A + L +R  L GGKGGFGALL+G     K T NFDACRDLQGRRLR +  E+ LR
Sbjct:   30 ALEDRTGIPAEEQLLCHGGRLLPAAGAAPLPPLPHAAGLDLLLR--LAGGKGGFGALLRGQGRDGKITDNFDACRDLQGRRLRTLEAEKKLR 119          
BLAST of Gcaud8948.t1 vs. uniprot
Match: A0A8J2PTA5_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2PTA5_9HEXA)

HSP 1 Score: 70.9 bits (172), Expect = 4.360e-11
Identity = 57/156 (36.54%), Postives = 82/156 (52.56%), Query Frame = 0
Query:   17 VNLRIGDHNRALHHGDLTFA-----------INCATGLPSHTFYLCQSGILLRPESLVTKPGEHTAFVQLFIRRALPGGKGGFGALLKGSSAT-KKTTNFDACRDLQGRRLRDVRREQALRT-----ALQQRDDQSSRQRQGAK-------PPSPV 148
            +N++I  H+  L   +LTF+           I+   GL    FYL Q+G L+  ES V         V + I   + GGKGGFG++L+   A  +KTTN DACRDL GRRLRD+  EQ L+      A ++R+ + +RQ++  K       PP P+
Sbjct:    1 MNIQIASHSLQLAGTELTFSSCPNEDALKARISDVFGLQREDFYLTQNGRLVTRESSVDLS------VPVRITPRVLGGKGGFGSMLRAIGAQIEKTTNRDACRDLSGRRLRDINEEQRLKRWFAKQAEREREREENRQKKLEKLRRIQDGPPLPL 150          
BLAST of Gcaud8948.t1 vs. uniprot
Match: A0A2M4BY25_9DIPT (Replication stress response regulator SDE2 n=3 Tax=Anopheles marajoara TaxID=58244 RepID=A0A2M4BY25_9DIPT)

HSP 1 Score: 70.5 bits (171), Expect = 5.100e-11
Identity = 66/180 (36.67%), Postives = 98/180 (54.44%), Query Frame = 0
Query:   32 DLTFAINCATGLPSHTFYLCQSGILLRPESLVTKPGEHTAFVQLFIRRALPGGKGGFGALLKGSSAT-KKTTNFDACRDLQGRRLRDVRREQALRTALQQRDDQSSRQRQGAKPPSPVKRKRAASEND-ETQQDEGLEEKLDGIAGEVRKAVTSGLRSLASRKKRQRVSDETAAHPTQNS 209
            D+  AI    GL    +YL QSG L+     VT        + L I   L GGKGGFG++L+   A  +KTTN +ACRDL GRRLRD+  E+ L+  L+++ + S  +RQ  K    + +  A  +++ E +Q E + E+L  + G+   AV +GL+ L S      +SD+T A  T+ S
Sbjct:   22 DIVSAIEQWKGLAPADYYLTQSGRLIGDWHNVTP------HIPLRINERLLGGKGGFGSMLRAIGAQIEKTTNREACRDLCGRRLRDINEEKRLKAYLEKQQNASEDERQ--KIQLKIDKLLAKPKHEFEDRQYESVREELI-VTGD--DAVQAGLQKLKS------LSDDTEATTTRQS 184          
BLAST of Gcaud8948.t1 vs. uniprot
Match: UPI00106D1B4B (replication stress response regulator SDE2-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D1B4B)

HSP 1 Score: 71.6 bits (174), Expect = 6.860e-11
Identity = 64/207 (30.92%), Postives = 104/207 (50.24%), Query Frame = 0
Query:   32 DLTFAINCATGLPSHTFYLCQSGILLRPESLVTKPGEHTAFVQLFIRRALPGGKGGFGALLKGSSAT-KKTTNFDACRDLQGRRLRDVRREQALRTALQ---QRDDQSSRQRQGAKPPSPVKRKRAASEN---DETQQDEGLEEKLDGIAGEVRKAV---TSGLRSLASRKKRQRVSDETAAHPTQNSPPAPMDWIRGYDDVSSDSD 228
            D+   I    G+P    YL  +G L+  +S  +   +   FVQ   +  LPGGKGGFG++L+   A  +KTTN +ACRDL GRR+RDV  E+ +   L    +RD + +R++Q       ++R + A ++   D T     ++E +D I   ++K +   TSG  S +  K++         H  +        W+   +D+SSDS+
Sbjct:   27 DIKQRIYQTKGIPEDNIYLTYNGYLMGNQSKFSL-NQEDVFVQCHFK--LPGGKGGFGSMLRAIGAQIEKTTNREACRDLSGRRMRDVNDEKKIADWLSKQSERDQEKARRKQ-----ERLERLKTAPKHVFEDSTAYASQIQENMDSIDDALQKGLKSSTSGQSSSSFGKRKFDDKKNKKGHKKRKL------WVNIDEDLSSDSE 219          
The following BLAST results are available for this feature:
BLAST of Gcaud8948.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3V3_9FLOR2.340e-9565.94Protein SDE2-like n=1 Tax=Gracilariopsis chorda Ta... [more]
R7QNX9_CHOCR2.560e-4647.08Sde2_N_Ubi domain-containing protein n=1 Tax=Chond... [more]
A0A1I8PJT2_STOCA3.340e-1234.93Replication stress response regulator SDE2 n=1 Tax... [more]
A0A182NM24_9DIPT4.430e-1232.89Replication stress response regulator SDE2 n=1 Tax... [more]
A0A7N0UAW8_KALFE7.480e-1241.96Sde2_N_Ubi domain-containing protein n=1 Tax=Kalan... [more]
UPI0015B2E7552.920e-1131.50replication stress response regulator SDE2 n=1 Tax... [more]
A0A2V0P341_9CHLO4.140e-1148.91Ubiquitin-like domain-containing protein n=1 Tax=R... [more]
A0A8J2PTA5_9HEXA4.360e-1136.54Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A2M4BY25_9DIPT5.100e-1136.67Replication stress response regulator SDE2 n=3 Tax... [more]
UPI00106D1B4B6.860e-1130.92replication stress response regulator SDE2-like n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024974Sde2, N-terminal ubiquitin domainPFAMPF13019Sde2_N_Ubicoord: 62..143
e-value: 3.5E-16
score: 59.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..229
NoneNo IPR availablePANTHERPTHR12786:SF1REPLICATION STRESS RESPONSE REGULATOR SDE2coord: 35..200
NoneNo IPR availablePANTHERPTHR12786SPLICING FACTOR SF3A-RELATEDcoord: 35..200

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_8_length_96899_cov_4.406888contigNODE_8_length_96899_cov_4.406888:10599..11288 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8948.t1Gcaud8948.t1Gracilaria caudata M_176_S67 malemRNANODE_8_length_96899_cov_4.406888 10599..11288 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8948.t1 ID=Gcaud8948.t1|Name=Gcaud8948.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=230bp
MAPVNVLLAGLPGAGTVNLRIGDHNRALHHGDLTFAINCATGLPSHTFYL
CQSGILLRPESLVTKPGEHTAFVQLFIRRALPGGKGGFGALLKGSSATKK
TTNFDACRDLQGRRLRDVRREQALRTALQQRDDQSSRQRQGAKPPSPVKR
KRAASENDETQQDEGLEEKLDGIAGEVRKAVTSGLRSLASRKKRQRVSDE
TAAHPTQNSPPAPMDWIRGYDDVSSDSDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024974Sde2_N