Gcaud8933.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8933.t1
Unique NameGcaud8933.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length347
Homology
BLAST of Gcaud8933.t1 vs. uniprot
Match: A0A2V3J386_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J386_9FLOR)

HSP 1 Score: 504 bits (1299), Expect = 7.120e-178
Identity = 256/345 (74.20%), Postives = 285/345 (82.61%), Query Frame = 0
Query:    1 MTSRSSNPPFWRTRKALSRLPIITQLSAAALAGALALLLIQIVAAFLVSSSTSVANSNVGALSISTPSIGTGIRPRTHLPPRPQPLVIVAAGLPRTGSTWVYNVLRILARIRDPNSVAGWYADLINIWKNHKTGRYDHMKESWLTAYKSLNTSVVIKMHGPGPFKLFSHGLPLEKAADLTVITHRDLRTEVRSWVYQNWNASIHAGDINSTPFGDSSQWVRVAHHILDERKSTLKSIGSGRFLDIRYEDWNNKPLEKQVEVIKQMANELNWEYTRDELMATAIEAARLEPPANDALLMYNPVNKLHPGHTRVDATNPNFVQALAKGFYAIEQDRDSSEFLHLKNY 345
            MT+RSS P FWRTRK+L+RLPI T L+ AA+AGAL +L+ Q                N  ++ +S  +   G+   T LPPRP+PLVIVAAGLPRTGSTWVYNV+RILARIRDPNSVAGWYADLINIWKNHKTGRYDHMKESWLTAYKSLNT++VIKMHGPGPFKLFSHG PL K A+LTVITHRDLRTEVRSWVYQNWNASIHAG+I STPFGD +QWVRVAHHILDER STL S+GSGR LDIRYEDWN K  E QV+VIK++ANEL W Y+R+ELMATAIEAARLEPPAN+A+LMYNPVNKLHPGHTRVDA +P FV AL KGF AIE+D DS  FL  K Y
Sbjct:    1 MTARSSQPLFWRTRKSLTRLPIATLLTFAAVAGALTMLMAQ----------------NFFSILLSKKAPVKGVA--TRLPPRPRPLVIVAAGLPRTGSTWVYNVIRILARIRDPNSVAGWYADLINIWKNHKTGRYDHMKESWLTAYKSLNTTLVIKMHGPGPFKLFSHGAPL-KQANLTVITHRDLRTEVRSWVYQNWNASIHAGNIGSTPFGDPNQWVRVAHHILDERLSTLASVGSGRVLDIRYEDWNQKSFEHQVKVIKKIANELGWPYSREELMATAIEAARLEPPANNAVLMYNPVNKLHPGHTRVDAKDPTFVHALEKGFRAIEKDADSRSFLKSKRY 326          
BLAST of Gcaud8933.t1 vs. uniprot
Match: A0A2V3J1S7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1S7_9FLOR)

HSP 1 Score: 108 bits (271), Expect = 2.030e-23
Identity = 81/273 (29.67%), Postives = 133/273 (48.72%), Query Frame = 0
Query:   83 PQPLVIVAAGLPRTGSTWVYNVLRILARIRDPNSVAG--WY-ADLINIWKNHKTGRYDHMKESWLTAYKSLNTSVVIKMHGPGPFKLFS---HGLPLEKAADLTVITHRDLRTEVRSWVYQNWNASIHAGDINSTPFGDSSQWVRVAHHILDERKSTLKSIGSG-RFLDIRYEDWNNKPLEKQVEVIKQMANELNWEYTRDELMATAIEAARLEPPAN---DALLMYNPVNKLHPGHTRVDATNPNFVQALAKGFYAIEQDRDSSEFLHLKNY 345
            P+P++++A G  RTGST+++N+LR+L RIRDPN+VA   W  A L+   +N+    YD      +   KS+ TS++IK+H    +  F+   H     K  DL V  +RDLR E  S  Y+ +         N + +   S+W      ++  R S +   GS    +DIRYE W +      +++I+Q+ + + W YT  +  +T  E  RL  P+       + ++  N + P H   +  +  FV     G  AI ++   + +L  K Y
Sbjct:   90 PRPILVIAGGGARTGSTFIFNILRVLMRIRDPNTVASSNWMLAKLVP--ENNTLTNYDR-----IALLKSMGTSILIKVHTAKQYYDFAGPAHRNTFAKEVDLLVTGYRDLRDETVS-AYKMFAK-------NRSEWESESKWAEQCQALIRRRNSLILEAGSNVPVVDIRYESWRDGGSACFLQLIRQLGSRIPWSYTEQDYKSTLNEVLRLRVPSGGDPSGRIDWHISNLMSPRHISTEQLSTEFVDM---GIRAIIREPKCAAWLTEKGY 344          
BLAST of Gcaud8933.t1 vs. uniprot
Match: A0A1X6NVY7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVY7_PORUM)

HSP 1 Score: 90.9 bits (224), Expect = 1.200e-16
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 0
Query:   84 QPLVIVAAGLPRTGSTWVYNVLRILARIRDPNSVAGWYADLINIWKNHK-----TGRYDHMK-ESWLTAYKSLNTSVVIKMHGPGPFKLFSHG-----------------LPLEK---AADLTVITHRDLRTEVRSWVYQNWNASIHAGDINSTPF 213
            +PL++VAAG  R+ STWVYNV RIL R+RDPN+VAGWY DL  +   +       G Y H++  S L A +SL+TSV++K+H    +     G                 +PL +   AAD+ + +HRD+R  VRS  +  W + ++    +   F
Sbjct:   84 RPLLVVAAGGSRSASTWVYNVARILLRVRDPNTVAGWYEDLAGLTGAYAQLEAGNGTYPHVEVASRLDALRSLDTSVLLKIHLVQEWATLLGGADAATTTATGGASDADLVPLTELSAAADVVLTSHRDVREVVRSLRHMGWGSRVNPAAFDHPDF 239          
BLAST of Gcaud8933.t1 vs. uniprot
Match: A0A7S2ZYK3_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZYK3_9RHOD)

HSP 1 Score: 79.3 bits (194), Expect = 6.140e-13
Identity = 80/292 (27.40%), Postives = 127/292 (43.49%), Query Frame = 0
Query:   85 PLVIVAAGLPRTGSTWVYNVLRILARIRDPNSVAGWYADLINIWKNHKTGRYDHMKESWLTAYKSLNTSVVIKMH-GPGPFKLFS--HGLPLEKAADLTVITHRDLRTEVRSWVYQNWNASIHA----------GDINSTPF------GDSSQWV---RVAHHILDERKSTLKSIG---------SGRFLDIRYEDWNNKPLEKQVEVIKQMANELNWEYTRDELMATAIEAARLEPPANDALLMYNPVNKLHPGHTRVDATNPNFVQALAKGFYAIEQDRDSSEFLHLKNY 345
            PLV+V  GLPRTGST VYN++R      +PN+++G+  DL++  +   T        S   A +S+   +V+K+H  P  ++LF      P E   D  + T RDLR +V S +   W++ ++           G++ ST         D   WV   R     LD+ K      G           +F D +   W  + LE      ++  +EL       E++AT ++   ++P    + +  NP   +H GH R      ++ +A   G  AIE D D S +L    Y
Sbjct:   67 PLVLVM-GLPRTGSTIVYNMIRKALEADNPNTLSGYVGDLVSTARAFSTDD----SASAALALRSMGVPLVVKLHLMPHIYQLFGPVQQAPAELGIDKIICTCRDLRMQVLSNIRMGWSSMVYEENLLQEDFCLGELKSTQLLSPSDLEDPRTWVLQARAQIRCLDKIKDWAGRDGIQWIRTEDIPRKFADPQGRAWLKQELEPLPGTRQRSESEL-------EVLATFLDG--IKPLQCSSTVAVNPSTHMHRGHIRKSEALKDYERA---GIEAIEADPDCSAWLSEHGY 341          
BLAST of Gcaud8933.t1 vs. uniprot
Match: A0A7S4M8Q7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M8Q7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.970e-8
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 0
Query:   83 PQPLVIVAAGLPRTGSTWVYNVLRILARIRDPNSVAGWYADLINIWKNHKTGRY 136
            P+PL++  AG  RTG+T++YN++RIL R RDPN ++GWY DL     ++  GRY
Sbjct:   66 PKPLIVFVAGGGRTGTTYMYNLVRILLRQRDPNLISGWYEDL-----SYAAGRY 114          
The following BLAST results are available for this feature:
BLAST of Gcaud8933.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J386_9FLOR7.120e-17874.20Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J1S7_9FLOR2.030e-2329.67Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6NVY7_PORUM1.200e-1636.54Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S2ZYK3_9RHOD6.140e-1327.40Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S4M8Q7_9STRA8.970e-850.00Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 67..309
e-value: 1.1E-11
score: 46.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 78..278
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 46..346
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 41..45
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..45
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 22..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..21
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_280_length_32368_cov_4.320445contigNODE_280_length_32368_cov_4.320445:17060..18100 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8933.t1Gcaud8933.t1Gracilaria caudata M_176_S67 malemRNANODE_280_length_32368_cov_4.320445 17060..18100 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8933.t1 ID=Gcaud8933.t1|Name=Gcaud8933.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=347bp
MTSRSSNPPFWRTRKALSRLPIITQLSAAALAGALALLLIQIVAAFLVSS
STSVANSNVGALSISTPSIGTGIRPRTHLPPRPQPLVIVAAGLPRTGSTW
VYNVLRILARIRDPNSVAGWYADLINIWKNHKTGRYDHMKESWLTAYKSL
NTSVVIKMHGPGPFKLFSHGLPLEKAADLTVITHRDLRTEVRSWVYQNWN
ASIHAGDINSTPFGDSSQWVRVAHHILDERKSTLKSIGSGRFLDIRYEDW
NNKPLEKQVEVIKQMANELNWEYTRDELMATAIEAARLEPPANDALLMYN
PVNKLHPGHTRVDATNPNFVQALAKGFYAIEQDRDSSEFLHLKNYA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase