Gcaud8906.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8906.t1
Unique NameGcaud8906.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length368
Homology
[Close]
BLAST of Gcaud8906.t1 vs. uniprot
Match: A0A2V3IY53_9FLOR (FA_FANCE domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY53_9FLOR)

HSP 1 Score: 343 bits (880), Expect = 8.850e-113
Identity = 186/372 (50.00%), Postives = 256/372 (68.82%), Query Frame = 0 
Query:    1 MSPNAQENLKAICRALEVRIHGVPYHGWEPWKEDMNVLDDWEKAVLDIKKKRPRLEDPRPEQTSMAL---LGSKKAAEA----DGLALEHNDMQVEQNLKQKSEETKGTDAPSEKKVSGSGKHSPQRVTKDGLSAVEKKSTEQIRNWALLSPHTDPPQQAIEVVLRSVDTSRVLGCIVPDDSTPLLRAAVISSFTEGIGASVASLMMTEMIVPYMQTLKAPAPREVMAAVEKFCSFHWRAAVAMYTHFGDSDKQVNGAIAELLGRVAGGLSPEVALSSLKGYSKCTWGEDGIKVIEALMARSKDQPGVVSAIVPSLEKNVIGMEKSVRFGKLLFTTVKDYPIVENEYEQVLESVAARSKVFLAKRALSLIKS 365
            +SPNAQ+NLKA+CRALE    G+   GW+ WK+  + +++W+KA+  IK+K   LE  + + + + L   +G K+A  +    +GL+   N          K    K TDA   K+        P R   + +SA E+KS E+IRNWA +S HT PPQ AI+++ +S D  ++L  +VP D +PL+RAAVIS FT+ IG ++A+L+M   I+PY+QTL++PAPREVM +V +FCSFHWR+A+ +Y HF   +++VNGA+AELL RV   L  E ALS+LK Y    WGEDGI+V+E L++R K+QP V+  ++PSLEKNVIGMEKSVRFGKLLFT VKD P +EN+Y Q+ ESVA RSKVFLAKRALSL+++
Sbjct:   38 LSPNAQKNLKALCRALETSFGGIQDDGWDLWKDAAHDINEWDKAIEIIKQKP--LEPGQYDLSEVQLPQDMGKKEATFSISGKNGLSDARNLADGSDISTSKPSSMKDTDAIMSKR--------PAREKNESISAEERKSAERIRNWAQVSSHTTPPQDAIDLLSKSTDLLQILQIMVPHDVSPLVRAAVISCFTDKIGTTMANLLMNATILPYVQTLESPAPREVMKSVVRFCSFHWRSAITLYKHFAQGNQRVNGAVAELLSRVGSELKAEAALSALKEYRTGVWGEDGIRVVETLLSRCKEQPDVLELLMPSLEKNVIGMEKSVRFGKLLFTIVKDLPGIENQYAQLFESVAERSKVFLAKRALSLLRT 399
[Close]
BLAST of Gcaud8906.t1 vs. uniprot
Match: R7QA35_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QA35_CHOCR)

HSP 1 Score: 137 bits (345), Expect = 6.040e-36
Identity = 69/147 (46.94%), Postives = 103/147 (70.07%), Query Frame = 0 
Query:  220 MAAVEKFCSFHWRAAVAMYTHFGDSDKQVNGAIAELLGRVAGGLSPEVALSSLKGYSKCTWGEDGIKVIEALMARSKDQPGVVSAIVPSLEKNVIGMEKSVRFGKLLFTTVKDYPIVENEYEQVLESVAARSKVFLAKRALSLIKSK 366
            M A+  F   HWR AV +Y    + +  V+GA+AE+L R A  ++P  AL  L+ + + TWGEDGI+V+EAL+ + K++      +V +LEKNV+G+EKSVRFGKLLFT V+D P V + + + +ES+ +RS VFLAKRAL+++++K
Sbjct:    1 MQALVAFAERHWRVAVRLYRVCAE-ESPVSGAVAEVLVRTAPVVAPAGALKGLRAWCEATWGEDGIRVVEALLGKCKNEEDAARLVVLALEKNVVGLEKSVRFGKLLFTVVRDLPGVADNFREQMESICSRSNVFLAKRALTVLRAK 146
The following BLAST results are available for this feature:
BLAST of Gcaud8906.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IY53_9FLOR8.850e-11350.00FA_FANCE domain-containing protein n=1 Tax=Gracila... [more]
R7QA35_CHOCR6.040e-3646.94Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021025Fanconi Anaemia group E protein, C-terminalPFAMPF11510FA_FANCEcoord: 187..358
e-value: 4.6E-8
score: 32.7
NoneNo IPR availableGENE3D1.25.40.480coord: 143..365
e-value: 8.9E-22
score: 79.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_732_length_18995_cov_4.455459contigNODE_732_length_18995_cov_4.455459:8114..9217 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8906.t1Gcaud8906.t1Gracilaria caudata M_176_S67 malemRNANODE_732_length_18995_cov_4.455459 8114..9217 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8906.t1 ID=Gcaud8906.t1|Name=Gcaud8906.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=368bp
MSPNAQENLKAICRALEVRIHGVPYHGWEPWKEDMNVLDDWEKAVLDIKK
KRPRLEDPRPEQTSMALLGSKKAAEADGLALEHNDMQVEQNLKQKSEETK
GTDAPSEKKVSGSGKHSPQRVTKDGLSAVEKKSTEQIRNWALLSPHTDPP
QQAIEVVLRSVDTSRVLGCIVPDDSTPLLRAAVISSFTEGIGASVASLMM
TEMIVPYMQTLKAPAPREVMAAVEKFCSFHWRAAVAMYTHFGDSDKQVNG
AIAELLGRVAGGLSPEVALSSLKGYSKCTWGEDGIKVIEALMARSKDQPG
VVSAIVPSLEKNVIGMEKSVRFGKLLFTTVKDYPIVENEYEQVLESVAAR
SKVFLAKRALSLIKSKK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021025Fanconi_anaemia_gr_E_prot_C