Gcaud890.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud890.t1
Unique NameGcaud890.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length56
Homology
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BLAST of Gcaud890.t1 vs. uniprot
Match: R7QG95_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG95_CHOCR)

HSP 1 Score: 62.0 bits (149), Expect = 7.810e-10
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0 
Query:    1 MQAFPLGVAFLLCLELLLAWNPQRPGLAVGLGQTAFGIGTIFFTQMFDLFIRHV 54
            +Q  P  + +L+ LELL AW+P RPGLAVGLG  A+G+GTI F+ +F+  +  V
Sbjct:   68 LQGIPFAIYYLISLELLAAWSPARPGLAVGLGNLAYGLGTIAFSGLFEYLLERV 121
The following BLAST results are available for this feature:
BLAST of Gcaud890.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QG95_CHOCR7.810e-1050.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..51
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 52..56
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availableTMHMMTMhelixcoord: 29..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5089_length_1788_cov_4.510312contigNODE_5089_length_1788_cov_4.510312:2..258 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud890.t1Gcaud890.t1Gracilaria caudata M_176_S67 malemRNANODE_5089_length_1788_cov_4.510312 2..258 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud890.t1 ID=Gcaud890.t1|Name=Gcaud890.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=56bp
MQAFPLGVAFLLCLELLLAWNPQRPGLAVGLGQTAFGIGTIFFTQMFDLF
IRHVGY
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