Gcaud8893.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud8893.t1
Unique Name	Gcaud8893.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	838

Homology

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BLAST of Gcaud8893.t1 vs. uniprot
Match: A0A2V3IH09_9FLOR (AIG1-type G domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH09_9FLOR)

HSP 1 Score: 495 bits (1275), Expect = 7.400e-163
Identity = 280/615 (45.53%), Postives = 383/615 (62.28%), Query Frame = 0

Query:   14 AGTVAIGQALGIHTSQRQRDLQQLEELVKQTEDELGDVMKDISNQCSAIRNQITAAMVIEVRSRLEPSRIPDEKLELLIKLLFLLKVQASNIVFAIVVKYPRRKKVGTVGVAGTTSERIEDLITRVDSFYKGLQEVQTEKTAFVNVRIRGKYNVRVETSCTALVYSIATAVCGLSRNAEFENRMTCPLKPEGEKTFVLLKPQAHNYMESEFDKLRRIYIIGDTRSGKSTVGNALLEADRFHVSKGLTGTMNIERGERVEEWNAELWRTDIFDTPGLNDGDNLDVWYMAAIEDHIQVMNQASTLIMTVSVSEGIKGNTRSTLDSYRTLFGGSMASMLILILTVNEAATEDDLEDYKEDNRTKWVQFDDRLRDDNVFCVSLSDLRDKSSSDSHTVLEKVFERCRGMPLKLIQSLLDKRNELRQAMLEKRKDLEAQIEELVNNGWQMYEHLSQVYAASQYTKLTTSYDGMFDGLVMKKTSLPRKVMALCSFGVLNRIQKTAIEVQCLGKQASELWAEFAEENIPCRYDDNLMDDLGDRIYRNGLAVVVQDLGLHHILTLRVHRYSVTIFHPTSYAKRELIDLLQEVVDGTGRELKQEVIDELMKSVAIPARISRPLGR 628
            A ++AI  ALG++T  ++ +  +L  L++  ++++  + ++I  QC  I++QI+AA V+EVRSRL+   IP EKLELLI L   +K  +S +VFAIVVKYP  +   T+G AG + +RIED +  +D FY+ LQ V   KTA+VNVRIRGKY+   E+                             L   G++              +E+D+LRR+Y++G+TRSGKST+GNALL    F VSK +TGTM IERGERVEE N ++WRTD FDTPGLND D LDVWY +AIEDHI+   +ASTLIMTVS   GI G    +L +Y+ LFG SMASMLI++LTVN+AA E +LE  K  N       D RL   NVFCVSL DLR    S S   ++++  RC+ M +KL+++L D+   L+ A+ EKR  LE ++  L++ GWQ Y+ L++ +  S Y KLT   DG FDG VMKKTS  +K MA  + GVLNRI+K AI V    + ++ LW  F EEN   R++ +LM   GD + R GLAVVVQ+LG   + +LRV+R+++ IF P  Y   EL   LQE +D   + L+ EV+  L+KSV +PA++    GR
Sbjct:   12 ADSIAIANALGLYTPAQKANQDKLHNLIESAKEDIQMMNEEIKGQCDIIKSQISAATVVEVRSRLQDIAIPPEKLELLIVLCLCMKAHSSTVVFAIVVKYPVGRISATLGFAGMSCDRIEDFVKGIDRFYRTLQHVNATKTAYVNVRIRGKYDTETES-----------------------------LSTYGDEP-------------NEYDQLRRVYLVGNTRSGKSTLGNALLRKSLFTVSKRMTGTMRIERGERVEELNGDIWRTDYFDTPGLNDKDGLDVWYQSAIEDHIKTFQRASTLIMTVSADSGINGAAFQSLGNYKELFGQSMASMLIVVLTVNDAAEESELELVKALNLPTVAGLDARLDHQNVFCVSLYDLRHNYDSASRRTVQRIASRCKSMSMKLVEALADRYRSLQNALREKRGSLEKELTSLIDEGWQAYDQLTEQFENSAYVKLTADEDGWFDGFVMKKTSPSKKSMAFMTAGVLNRIRKFAIHVNHDSEISTSLWNRFLEENKSDRHNRDLMWFFGDLLDRKGLAVVVQELGTVLVGSLRVNRFTIRIFDPVHYTHDELHTYLQEKLDENAQCLRPEVLGTLLKSV-VPAKVVTTKGR 583

The following BLAST results are available for this feature:

BLAST of Gcaud8893.t1 vs. uniprot

BLAST of Gcaud8893.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IH09_9FLOR	7.400e-163	45.53	AIG1-type G domain-containing protein n=1 Tax=Grac...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 422..453
None	No IPR available	COILS	Coil	Coil	coord: 27..54
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 337..355
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 112..336
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 356..837
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..89
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 90..111
None	No IPR available	CDD	cd00882	Ras_like_GTPase	coord: 232..325 e-value: 3.04052E-7 score: 48.992
IPR006703	AIG1-type guanine nucleotide-binding (G) domain	PFAM	PF04548	AIG1	coord: 229..372 e-value: 1.6E-13 score: 50.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 228..453 e-value: 1.9E-17 score: 65.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 222..371

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_79_length_55646_cov_4.454091	contig	NODE_79_length_55646_cov_4.454091:51681..55267 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8893.t1	Gcaud8893.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_79_length_55646_cov_4.454091 51681..55267 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud8893.t1 ID=Gcaud8893.t1|Name=Gcaud8893.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=838bp
MVLVEVATVIEVVAGTVAIGQALGIHTSQRQRDLQQLEELVKQTEDELGD
VMKDISNQCSAIRNQITAAMVIEVRSRLEPSRIPDEKLELLIKLLFLLKV
QASNIVFAIVVKYPRRKKVGTVGVAGTTSERIEDLITRVDSFYKGLQEVQ
TEKTAFVNVRIRGKYNVRVETSCTALVYSIATAVCGLSRNAEFENRMTCP
LKPEGEKTFVLLKPQAHNYMESEFDKLRRIYIIGDTRSGKSTVGNALLEA
DRFHVSKGLTGTMNIERGERVEEWNAELWRTDIFDTPGLNDGDNLDVWYM
AAIEDHIQVMNQASTLIMTVSVSEGIKGNTRSTLDSYRTLFGGSMASMLI
LILTVNEAATEDDLEDYKEDNRTKWVQFDDRLRDDNVFCVSLSDLRDKSS
SDSHTVLEKVFERCRGMPLKLIQSLLDKRNELRQAMLEKRKDLEAQIEEL
VNNGWQMYEHLSQVYAASQYTKLTTSYDGMFDGLVMKKTSLPRKVMALCS
FGVLNRIQKTAIEVQCLGKQASELWAEFAEENIPCRYDDNLMDDLGDRIY
RNGLAVVVQDLGLHHILTLRVHRYSVTIFHPTSYAKRELIDLLQEVVDGT
GRELKQEVIDELMKSVAIPARISRPLGRNWRTDEDLQDLEKFSEVQLGTK
AHIEVIGYSALDLFSVFPRRRLIAWNLNGGSCMVGGKRTFGGAYISGSAI
VIPEQLFKRQTNFKEYLHARKDILSELKSDGVKKFKERYNISKGGFDVED
WRLTKGFPFITNDRWSEYASRELFPYLKAAANGTNFVIRDEKEVTIIREP
KPFPDLYARLARLKAIESFCVPTHHGVLVAAPCRFLV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006703	G_AIG1
IPR027417	P-loop_NTPase