Gcaud8681.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8681.t1
Unique NameGcaud8681.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length168
Homology
BLAST of Gcaud8681.t1 vs. uniprot
Match: A0A2V3J5G9_9FLOR (Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5G9_9FLOR)

HSP 1 Score: 152 bits (385), Expect = 8.790e-43
Identity = 74/148 (50.00%), Postives = 107/148 (72.30%), Query Frame = 0
Query:   19 EPTVFHSLQPPSITPVAYFRRITQYALCSSSAYILAFWYLQEIARVQPC-LAIDSANIHRLLLTANLLAAKVLEDVVHNNAHFAKVGGVHVKELNMLELDMLRMLRFQLWISAEKYEAFEHSILNEVLSSDDPQFLSLQNRIIEKGYS 165
            EP+VFH+LQ PSITP  Y RR+++YA CS S +I+AF+YL +IA+ +   L +++ ++HRLLLTA LLA K+++DV+++NAHFAKVGG+ V ELNML   ML ML+F+L +S +++E FE  +L  VL   D  +  L  R+   GY+
Sbjct:  111 EPSVFHALQAPSITPSEYLRRLSRYAFCSRSVFIVAFYYLHKIAQKRSLNLCVNALSVHRLLLTATLLATKMMDDVLYDNAHFAKVGGLDVAELNMLXXXMLHMLQFELVVSTDQFERFEKRVLTHVLHCHDSSYFVLHERLRNMGYA 258          
BLAST of Gcaud8681.t1 vs. uniprot
Match: A0A7S1EV37_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EV37_9RHOD)

HSP 1 Score: 131 bits (330), Expect = 1.100e-34
Identity = 59/142 (41.55%), Postives = 97/142 (68.31%), Query Frame = 0
Query:   23 FHSLQPPSITPVAYFRRITQYALCSSSAYILAFWYLQEIARVQPCLAIDSANIHRLLLTANLLAAKVLEDVVHNNAHFAKVGGVHVKELNMLELDMLRMLRFQLWISAEKYEAFEHSILNEVLSSDDPQFLSLQNRIIEKGY 164
            FH L+PP ++   Y +RI +Y+ CS S +ILA +++  +++   C  I + N+HRL +TA LLA K  EDV+++N HF+KVGG++++ELN++EL ML  L ++L++S + Y  FE SIL+EV+ S D   +  Q  +++ G+
Sbjct:   50 FHGLEPPRVSLHDYLQRIDRYSFCSRSCHILALYFVDRLSKRSSCFRITALNVHRLYITAFLLAVKSSEDVLYDNLHFSKVGGIYLRELNLMELKMLEELNYELFVSPDSYREFERSILDEVVKSSDYSCIEPQLLLLQSGF 191          
BLAST of Gcaud8681.t1 vs. uniprot
Match: A0A7S2JQ43_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JQ43_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 5.480e-30
Identity = 55/134 (41.04%), Postives = 90/134 (67.16%), Query Frame = 0
Query:   18 HEPTVFHSLQPPSITPVAYFR-RITQYALCSSSAYILAFWYLQEIARVQPCLAIDSANIHRLLLTANLLAAKVLEDVVHNNAHFAKVGGVHVKELNMLELDMLRMLRFQLWISAEKYEAFEHSILNEVLSSDDP 150
            ++ T FHS +PP+I+  +Y   RI +YA CS   +ILA  Y+ ++ +  P   I S N+HRLL+TA +LA+K  +DV +NNA++A+VGG+  +E+N LE++MLRM+ F L++  ++YE +  S+ + V +   P
Sbjct:   34 NQVTPFHSSRPPAISVKSYLEDRILKYAGCSEETFILALIYMDQVVQFNPDFVISSLNVHRLLITAIMLASKFFDDVYYNNAYYARVGGISNQEVNSLEMEMLRMISFSLFVQPDQYERYRGSLYSHVAAPTAP 167          
BLAST of Gcaud8681.t1 vs. uniprot
Match: A0A835IX60_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IX60_9MAGN)

HSP 1 Score: 115 bits (289), Expect = 2.630e-29
Identity = 59/147 (40.14%), Postives = 94/147 (63.95%), Query Frame = 0
Query:   21 TVFHSLQPPSITPVAYFRRITQYALCSSSAYILAFWYLQEIARVQPCLAIDSANIHRLLLTANLLAAKVLEDVVHNNAHFAKVGGVHVKELNMLELDMLRMLRFQLWISAEKYEAFEHSILNEVLSSDDPQFLSLQNRIIEKGYSFE 167
            +VFH L  P+I+  +Y  RI +YA CS S +++A+ YL   A+ QPCL I+S N+HRLL+T+ ++AAK ++D+ +NNA++AKVGG+ + E+N LE+D L  L F L ++   +  +   +  E+L    P  LSL +  +  G S +
Sbjct:   45 SVFHGLTRPTISVQSYLERIFKYANCSPSCFVVAYVYLDRFAQRQPCLPINSFNVHRLLITSVMVAAKFMDDMYYNNAYYAKVGGISITEMNFLEVDFLFGLSFHLNVTPNTFHTYCSYLHREMLVETIP--LSLSDSTLSLGKSLK 189          
BLAST of Gcaud8681.t1 vs. uniprot
Match: A0A0D3B6R2_BRAOL (Cyclin n=4 Tax=Brassica TaxID=3705 RepID=A0A0D3B6R2_BRAOL)

HSP 1 Score: 115 bits (287), Expect = 4.160e-29
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = 0
Query:   16 ENHEPTVFHSLQPPSITPVAYFRRITQYALCSSSAYILAFWYLQEIARVQPCLAIDSANIHRLLLTANLLAAKVLEDVVHNNAHFAKVGGVHVKELNMLELDMLRMLRFQLWISAEKYEAF 136
            ++   +VFH L  PSIT  +Y  RI +YA CSSS +++A+ YL      QP L I+S N+HRLL+T+ + AAK L+D+ +NNA++AKVGG+  KE+N+LELD L  L F L ++   + A+
Sbjct:   37 QSQSNSVFHGLSRPSITIQSYLERIYKYANCSSSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMTAAKFLDDLYYNNAYYAKVGGISTKEMNLLELDFLFGLGFDLNVTPNTFHAY 157          
BLAST of Gcaud8681.t1 vs. uniprot
Match: A0A7S0T842_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T842_9RHOD)

HSP 1 Score: 117 bits (292), Expect = 5.950e-29
Identity = 55/148 (37.16%), Postives = 93/148 (62.84%), Query Frame = 0
Query:   17 NHEPTVFHSLQPPSITPVAYFRRITQYALCSSSAYILAFWYLQEIARVQPCLAIDSANIHRLLLTANLLAAKVLEDVVHNNAHFAKVGGVHVKELNMLELDMLRMLRFQLWISAEKYEAFEHSILNEVLSSDDPQFLSLQNRIIEKGY 164
            N   T F +   P+I+   YF R+ +YA CS +  ++AF Y++  A  QP L +   N+HRL++TA +LAAK  +DV +NNA++AKVGG+ ++E+N+LE + L  + F+L++S E++  FE  +++EVLS         +  + + G+
Sbjct:   76 NRRLTCFDASSLPAISACDYFHRVAKYAFCSPACLMMAFIYIERGASYQPSLRLSPTNVHRLIITAVMLAAKFFDDVYYNNAYYAKVGGIPLQEINLLETEFLMAVGFELFVSEEEFIRFETDVVDEVLSDRTSLCADARRLLSQNGF 223          
BLAST of Gcaud8681.t1 vs. uniprot
Match: UPI0019004E50 (cyclin-U4-1-like n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0019004E50)

HSP 1 Score: 114 bits (286), Expect = 6.030e-29
Identity = 57/129 (44.19%), Postives = 86/129 (66.67%), Query Frame = 0
Query:   23 FHSLQPPSITPVAYFRRITQYALCSSSAYILAFWYLQEIARVQPCLAIDSANIHRLLLTANLLAAKVLEDVVHNNAHFAKVGGVHVKELNMLELDMLRMLRFQLWISAEKYEAFEHSILNEVLSSDDPQ 151
            F+ L  PSI+  +Y  RI +YA CS S +++A+ YL      QP  +IDS N+HRLL+T+ LL+AK L+D+ +NNA++AKVGG+   E+N+LELD L  LRFQL +S   +  +   + +E+L +  P+
Sbjct:   47 FYGLSRPSISIKSYLERIFKYANCSPSCFVVAYVYLHRFLHNQPSFSIDSFNVHRLLITSVLLSAKFLDDLYYNNAYYAKVGGISTMEMNLLELDFLFGLRFQLNVSPNTFHIYCSYLQSEMLLTTQPK 175          
BLAST of Gcaud8681.t1 vs. uniprot
Match: A0A0A0KER4_CUCSA (Cyclin n=1 Tax=Cucumis sativus TaxID=3659 RepID=A0A0A0KER4_CUCSA)

HSP 1 Score: 115 bits (287), Expect = 8.430e-29
Identity = 56/138 (40.58%), Postives = 89/138 (64.49%), Query Frame = 0
Query:   13 SGGENHEPTVFHSLQPPSITPVAYFRRITQYALCSSSAYILAFWYLQEIARVQPCLAIDSANIHRLLLTANLLAAKVLEDVVHNNAHFAKVGGVHVKELNMLELDMLRMLRFQLWISAEKYEAFEHSILNEVLSSDDP 150
            S  E  + + FH L  PSI+  +Y  RI +YA CS+S +I+A+ YL   A+ QP L I+S N+HRLL+T+ L+AAK ++D+ +NNA +A+VGG+  +E+N LE+D L  L F+L ++   +  +   + NE+   + P
Sbjct:   37 SATETQKNSAFHGLTRPSISLQSYLERIFKYANCSNSCFIVAYVYLDRFAQKQPLLPINSYNVHRLLITSVLVAAKFMDDLCYNNAFYARVGGISTREINFLEVDFLFGLGFELNVTPTTFHTYSSCLQNEIFLLNPP 174          
BLAST of Gcaud8681.t1 vs. uniprot
Match: A0A7S3RJ16_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RJ16_9SPIT)

HSP 1 Score: 114 bits (286), Expect = 9.290e-29
Identity = 55/131 (41.98%), Postives = 87/131 (66.41%), Query Frame = 0
Query:   21 TVFHSLQPPSITPVAYFR-RITQYALCSSSAYILAFWYLQEIARVQPCLAIDSANIHRLLLTANLLAAKVLEDVVHNNAHFAKVGGVHVKELNMLELDMLRMLRFQLWISAEKYEAFEHSILNEVLSSDDP 150
            T FHS +PP+IT  +Y   RI +YA CS   +ILA  Y+ ++ +  P   I+S N+HRLL+T+ +LA+K  +DV +NNA++A+VGG+   E+N LE++MLRM+ F L++  ++YE +  S+ + V     P
Sbjct:   43 TPFHSSKPPAITVRSYLEDRILKYAGCSEETFILALIYIDQVVQFNPDFIINSLNVHRLLITSIMLASKFFDDVYYNNAYYARVGGISNVEVNSLEMEMLRMISFSLFVQTDQYERYRASLYSHVGIQSQP 173          
BLAST of Gcaud8681.t1 vs. uniprot
Match: B7FHT5_MEDTR (Cyclin n=1 Tax=Medicago truncatula TaxID=3880 RepID=B7FHT5_MEDTR)

HSP 1 Score: 114 bits (284), Expect = 1.230e-28
Identity = 56/129 (43.41%), Postives = 88/129 (68.22%), Query Frame = 0
Query:   17 NHEPTVFHSLQPPSITPVAYFRRITQYALCSSSAYILAFWYLQEIARVQPCLAIDSANIHRLLLTANLLAAKVLEDVVHNNAHFAKVGGVHVKELNMLELDMLRMLRFQLWISAEKYEAFEHSILNEVL 145
            +H+ ++FH L  P+I+  +Y  RI +YA CSSS +I+A+ YL    + QP L I+S N+HRLL+T+ ++AAK ++DV +NNA++AKVGG+   E+N LELD L  L F L ++   ++A+   +  E+L
Sbjct:   33 HHKISIFHGLSRPNISIQSYLERIFKYANCSSSCFIVAYVYLDRFTQTQPSLPINSFNVHRLLITSVMVAAKFMDDVCYNNAYYAKVGGITKTEMNFLELDFLFGLGFNLNVTPVTFQAYCVHLQREML 161          
The following BLAST results are available for this feature:
BLAST of Gcaud8681.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5G9_9FLOR8.790e-4350.00Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A7S1EV37_9RHOD1.100e-3441.55Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S2JQ43_9EUKA5.480e-3041.04Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A835IX60_9MAGN2.630e-2940.14Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
A0A0D3B6R2_BRAOL4.160e-2946.28Cyclin n=4 Tax=Brassica TaxID=3705 RepID=A0A0D3B6R... [more]
A0A7S0T842_9RHOD5.950e-2937.16Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
UPI0019004E506.030e-2944.19cyclin-U4-1-like n=1 Tax=Benincasa hispida TaxID=1... [more]
A0A0A0KER4_CUCSA8.430e-2940.58Cyclin n=1 Tax=Cucumis sativus TaxID=3659 RepID=A0... [more]
A0A7S3RJ16_9SPIT9.290e-2941.98Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
B7FHT5_MEDTR1.230e-2843.41Cyclin n=1 Tax=Medicago truncatula TaxID=3880 RepI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013922Cyclin PHO80-likePFAMPF08613Cyclincoord: 21..126
e-value: 5.2E-29
score: 101.7
IPR013922Cyclin PHO80-likePANTHERPTHR15615UNCHARACTERIZEDcoord: 17..154
NoneNo IPR availableGENE3D1.10.472.10coord: 1..162
e-value: 3.3E-40
score: 139.9
NoneNo IPR availablePANTHERPTHR15615:SF91CYCLIN-U4-1coord: 17..154
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 40..58
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 59..167
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..39
IPR012389Cyclin P/UPIRSFPIRSF027110PREGcoord: 1..164
e-value: 2.1E-44
score: 149.7
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 36..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1987_length_7321_cov_5.542600contigNODE_1987_length_7321_cov_5.542600:2407..2910 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8681.t1Gcaud8681.t1Gracilaria caudata M_176_S67 malemRNANODE_1987_length_7321_cov_5.542600 2407..2910 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8681.t1 ID=Gcaud8681.t1|Name=Gcaud8681.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=168bp
MTLQMQKNKSLRSGGENHEPTVFHSLQPPSITPVAYFRRITQYALCSSSA
YILAFWYLQEIARVQPCLAIDSANIHRLLLTANLLAAKVLEDVVHNNAHF
AKVGGVHVKELNMLELDMLRMLRFQLWISAEKYEAFEHSILNEVLSSDDP
QFLSLQNRIIEKGYSFE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013922Cyclin_PHO80-like
IPR012389Cyclin_P/U
IPR036915Cyclin-like_sf