Gcaud8662.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8662.t1
Unique NameGcaud8662.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length483
Homology
The following BLAST results are available for this feature:
BLAST of Gcaud8662.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 343..361
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 467..482
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 379..442
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 362..378
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..323
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 443..466
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 324..342
NoneNo IPR availableTMHMMTMhelixcoord: 362..384
NoneNo IPR availableTMHMMTMhelixcoord: 320..342
NoneNo IPR availableTMHMMTMhelixcoord: 443..465

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_497_length_23640_cov_4.448469contigNODE_497_length_23640_cov_4.448469:8110..9558 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8662.t1Gcaud8662.t1Gracilaria caudata M_176_S67 malemRNANODE_497_length_23640_cov_4.448469 8110..9558 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8662.t1 ID=Gcaud8662.t1|Name=Gcaud8662.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=483bp
MFDTSMIMLQVLILALISTTSLSNDCIFNTSASTLNAASDLALSGATTEN
NWTIVRFASPALRRIPNQAIDGRPPEFFDALFNRRHNSQSYMWASASNSA
RTGAALAHLISCTTEMFARSDDASRHSLCVSSVSGDQTSQSLDDRCSVHS
TTQLLIGVDNDSNRPNRTGTQACWCETACTTIGASFEDTSNGSTQVRRVN
SVVVLEETEELPTMSASVYENGEDGNNRPGINWYQENLVDGQAPLGKGVF
PRNDGRYTQGVVLRSLRLRSVVDPISSEDTCPNAAGFMSAVELRTMARVE
QEMMEILNAAIAVDLAETPARTSTILLTIASALTAVLVFGWLDTASKRVD
SMKKARRLREMLPPLAAIAVVVVAELAIENIPMYFLLAQEIAARDHIETL
AVEVIGAGNQVSVLPIVNGLAEEFLDVITALVLITVKNNRTSLSGIVIAT
VLLSVASVLSICIGIGKRCASARQSSERPVGA*
back to top