Gcaud8517.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8517.t1
Unique NameGcaud8517.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length246
Homology
BLAST of Gcaud8517.t1 vs. uniprot
Match: R7Q637_CHOCR (Uncharacterized protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7Q637_CHOCR)

HSP 1 Score: 117 bits (292), Expect = 3.980e-28
Identity = 61/176 (34.66%), Postives = 99/176 (56.25%), Query Frame = 0
Query:   66 QLVSTGLVVSKGSSGVLNFNITLNAVQVSAIADSDQAFMQCLSSQGRSRYLDMKKKYNGNLEIPMMEWLGVDLNGETTRRDMRRARRRQQRYDEISAIVNQVLLELITTVVQISGTLRAEGVSIMPTTVFAFIRMARVTLEDGSTMKVLSTNPDDLTAANSCGHEAPSSMLTLDII 241
            ++   GL V++G+ G L F+I + A+    +  +D+ F   LS+  +S Y   K  +   L+IP+ +W+G D + + T          Q+ Y E     +Q+L    +T ++ISG+L+A G+S  PT  FAFI++ARVT EDGS+  ++S NP+D+ A  S G   PS    +D+I
Sbjct:   80 RITRVGLNVNRGAYGTLYFDIVVKAIDAETLQKNDKEFEATLSAAEKSVYRTRKASWKKGLDIPLFKWIGADFDKKVTTESFTEEAASQENYTEKVRAASQLLENSASTKIRISGSLKATGISFRPTVAFAFIKLARVTFEDGSSQLIVSNNPEDVVAGTSGGDVLPSEDPVVDVI 255          
BLAST of Gcaud8517.t1 vs. uniprot
Match: R7Q6J5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6J5_CHOCR)

HSP 1 Score: 92.0 bits (227), Expect = 6.810e-19
Identity = 51/177 (28.81%), Postives = 96/177 (54.24%), Query Frame = 0
Query:   53 SRQPVSGTQVSFEQLVSTGLVVSKGSSGVLNFNITLNAVQVSAIADSDQAFMQCLSSQGRSRYLDMKKKYNGNLEIPMMEWLGVDLNGETTRR-DMRRARRRQQRYDEISAIVNQVLLELITTVVQISGTLRAEGVSIMPTTVFAFIRMARVTLEDGSTMKVLSTNPDDLTAANSCG 228
            +R P   +   F +  + G+ V++G++  ++F+ITL+ +    +A  D  +   L+   +  Y+  K  Y G L +P M  +G DL        ++R++R  +Q ++     V+++L  +    VQI G+ R  G S++P TV+ ++++ARVT  DG T+ ++ST+P D   + S G
Sbjct:   45 ARAPFKSSVSGFIRASTFGVSVTRGATATISFSITLSGISAVEMAKKDAIYQNILTGSLKKTYMRRKNAYKGGLNLPFMADIGADLRRRKLNGGELRKSRVSKQLFERRLCAVSKILGGVRRARVQIRGSRRVTGTSLIPRTVYGYVKVARVTRTDGKTITIVSTDPRDFVVSTSEG 221          
BLAST of Gcaud8517.t1 vs. uniprot
Match: R7Q4Y7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4Y7_CHOCR)

HSP 1 Score: 66.6 bits (161), Expect = 1.730e-10
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 0
Query:  130 MMEWLGVDLNGETTRRDMRRARRRQQRYDEISAIVNQVLLELITTVVQISGTLRAEGVSIMPTTVFAFIRMARVTLEDGSTMKVLSTNPDDLTAANSCGHEAPSSMLTLDII 241
            M+E+ G D+  + ++ ++   R   + + +    +  +L  +  T ++I+GTL A GVS +PT  FAF+R+AR+  EDGST  V+S   +D+ AA+  G    +S    DI+
Sbjct:    1 MIEFTGADILEDLSKEELVEKRESSEEFRKREQALTSILETVADTRIRINGTLTATGVSQIPTVAFAFVRLARIEFEDGSTQLVVSNKNEDIIAADEDGDAVGTSDQESDIL 112          
The following BLAST results are available for this feature:
BLAST of Gcaud8517.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
R7Q637_CHOCR3.980e-2834.66Uncharacterized protein n=2 Tax=Chondrus crispus T... [more]
R7Q6J5_CHOCR6.810e-1928.81Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q4Y7_CHOCR1.730e-1033.04Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..245
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_243_length_34547_cov_4.802386contigNODE_243_length_34547_cov_4.802386:5577..6314 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8517.t1Gcaud8517.t1Gracilaria caudata M_176_S67 malemRNANODE_243_length_34547_cov_4.802386 5577..6314 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8517.t1 ID=Gcaud8517.t1|Name=Gcaud8517.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=246bp
MATLRVHVFLISMVFVLQKLSNAQDFVALSENAYDGDSLQHIYERMIRNP
ARSRQPVSGTQVSFEQLVSTGLVVSKGSSGVLNFNITLNAVQVSAIADSD
QAFMQCLSSQGRSRYLDMKKKYNGNLEIPMMEWLGVDLNGETTRRDMRRA
RRRQQRYDEISAIVNQVLLELITTVVQISGTLRAEGVSIMPTTVFAFIRM
ARVTLEDGSTMKVLSTNPDDLTAANSCGHEAPSSMLTLDIIDLPR*
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