Gcaud8468.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8468.t1
Unique NameGcaud8468.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length198
Homology
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BLAST of Gcaud8468.t1 vs. uniprot
Match: A0A2V3IYM3_9FLOR (Protein LURP-one-related 15 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYM3_9FLOR)

HSP 1 Score: 115 bits (287), Expect = 1.240e-27
Identity = 69/196 (35.20%), Postives = 107/196 (54.59%), Query Frame = 0 
Query:    5 PKQFSPPPRGASRSPLERPTEYDIAIRTVSMSG-KFTINQLPEAVPVFKLKRKNWSMHNVHYLYDLNGVVLYKLENTSATDLRCRARIVDEQSGRTVFVLRRKGYFLGRGANTVVAWQGDSEEGEPYLRVETGLLQRHFTVKEHATDKLVADARREKIGRP--------FRLRLEAGYDAAMMVFFAIAADSNFHD 191
            P   S PP  A+R    +  E+ I     S SG  F+I +      VFK+K   +S  +   LYD++G  +YK+  +  T LR R +I+D  + R V  LR+K +  G G +T+ AW+G+++ G PY+ V+  + ++ FT+KE AT+++VA  RR              + LR+E G DAA++VFF IA D  + D
Sbjct:  100 PVHHSMPP-AAARFVFNQRVEFKIKENVFSFSGDSFSIKRTDTGEAVFKVKGNAFSFKDSKSLYDMHGNPIYKMVESILT-LRGRMQILDAATKRPVITLRKKSFIPGFGNSTISAWRGETDSGSPYIEVKGDIFRKDFTIKELATNRIVATVRRRSFTLSNLLLEKDSYVLRIEPGIDAALIVFFVIAVDEQYRD 293
The following BLAST results are available for this feature:
BLAST of Gcaud8468.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IYM3_9FLOR1.240e-2735.20Protein LURP-one-related 15 n=1 Tax=Gracilariopsis... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038595LURP-one-related superfamilyGENE3D2.40.160.200coord: 18..194
e-value: 2.5E-14
score: 55.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
IPR025659Tubby-like, C-terminalSUPERFAMILY54518Tubby C-terminal domain-likecoord: 24..187

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1692_length_8986_cov_4.234626contigNODE_1692_length_8986_cov_4.234626:2995..3588 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8468.t1Gcaud8468.t1Gracilaria caudata M_176_S67 malemRNANODE_1692_length_8986_cov_4.234626 2995..3588 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8468.t1 ID=Gcaud8468.t1|Name=Gcaud8468.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=198bp
MSARPKQFSPPPRGASRSPLERPTEYDIAIRTVSMSGKFTINQLPEAVPV
FKLKRKNWSMHNVHYLYDLNGVVLYKLENTSATDLRCRARIVDEQSGRTV
FVLRRKGYFLGRGANTVVAWQGDSEEGEPYLRVETGLLQRHFTVKEHATD
KLVADARREKIGRPFRLRLEAGYDAAMMVFFAIAADSNFHDSHGASD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038595LOR_sf
IPR025659Tubby-like_C