Gcaud8467.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud8467.t1
Unique Name	Gcaud8467.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	159

Homology

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BLAST of Gcaud8467.t1 vs. uniprot
Match: A0A2V3IYM3_9FLOR (Protein LURP-one-related 15 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYM3_9FLOR)

HSP 1 Score: 80.1 bits (196), Expect = 5.480e-15
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 0

Query:   53 RIVLSLRRKEYFLGWGRNTIVAWKNDEEDGEPFLRVETGLLQRRFTVKELATDKLVADARREK--------------IGVEAGYDAAMMVLFAIAVDSNFRD 140
            R V++LR+K +  G+G +TI AW+ + + G P++ V+  + ++ FT+KELAT+++VA  RR                + +E G DAA++V F IAVD  +RD
Sbjct:  192 RPVITLRKKSFIPGFGNSTISAWRGETDSGSPYIEVKGDIFRKDFTIKELATNRIVATVRRRSFTLSNLLLEKDSYVLRIEPGIDAALIVFFVIAVDEQYRD 293

The following BLAST results are available for this feature:

BLAST of Gcaud8467.t1 vs. uniprot

BLAST of Gcaud8467.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IYM3_9FLOR	5.480e-15	37.25	Protein LURP-one-related 15 n=1 Tax=Gracilariopsis...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038595	LURP-one-related superfamily	GENE3D	2.40.160.200		coord: 19..142 e-value: 7.1E-6 score: 27.6
IPR025659	Tubby-like, C-terminal	SUPERFAMILY	54518	Tubby C-terminal domain-like	coord: 42..135

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1692_length_8986_cov_4.234626	contig	NODE_1692_length_8986_cov_4.234626:1172..1752 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8467.t1	Gcaud8467.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1692_length_8986_cov_4.234626 1172..1752 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud8467.t1 ID=Gcaud8467.t1|Name=Gcaud8467.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=159bp
XLAAAQRRITLPSGDPTEYKLAIRTGSRSDKFTINQLPGASPVFKVKRKH
KSRIVLSLRRKEYFLGWGRNTIVAWKNDEEDGEPFLRVETGLLQRRFTVK
ELATDKLVADARREKIGVEAGYDAAMMVLFAIAVDSNFRDTHFASAIDRR
EQGVAGAS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR038595	LOR_sf
IPR025659	Tubby-like_C