Gcaud8440.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8440.t1
Unique NameGcaud8440.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length240
Homology
BLAST of Gcaud8440.t1 vs. uniprot
Match: A0A2V3J399_9FLOR (ATP-binding cassette sub-family D member 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J399_9FLOR)

HSP 1 Score: 266 bits (681), Expect = 1.400e-81
Identity = 155/244 (63.52%), Postives = 176/244 (72.13%), Query Frame = 0
Query:    1 MTNALSVLVRQPHAALAAAA----TTGVLAHKWNAAVDSKRLDSA-IYRPHAHSALPQPSSSQTPARVDLRFVKTVASFLRVAICALPSQEASVLALVGCCWPPAAGSTCGLVPMGDTSSKAIVARDRRSFIRLAVVDIATMMFPMSFVNNSLRYSIARLKLLMHRCLSLYLHEKYLANNTFCKLSNLGARIRNVDQRLPVDIGRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMI 239
            MTNALSVL RQP  ALAAAA    TTG+ AHKWNAAV SKRL++A +YR  A             ARVDLRFV+ V +FLRV +    + EA+VLALV       +         G    KAIVARD+RSF+R AV DIATMMFPMSFVNNSL+Y+IARLKLLM R +SLY H+KYL++NTF KLSNL AR+RN DQ L VDI R CSSL DLYCNISKP+FDI LFSRRL+RSLGPSGPL MI
Sbjct:    1 MTNALSVLARQPRTALAAAAAVAATTGLAAHKWNAAVQSKRLETAFLYRSAASPRXXXXXXXXXXARVDLRFVRAVLAFLRVCVPGARTSEAAVLALVATLLAARSYLDLWASANGGHVVKAIVARDKRSFLRRAVFDIATMMFPMSFVNNSLKYTIARLKLLMRRRMSLYFHDKYLSHNTFYKLSNLDARVRNPDQLLTVDIDRFCSSLADLYCNISKPLFDIFLFSRRLSRSLGPSGPLFMI 244          
BLAST of Gcaud8440.t1 vs. uniprot
Match: R7QFQ6_CHOCR (ATP-binding cassette, sub-family D (ALD), member 3 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFQ6_CHOCR)

HSP 1 Score: 226 bits (577), Expect = 3.000e-66
Identity = 130/247 (52.63%), Postives = 166/247 (67.21%), Query Frame = 0
Query:    1 MTNALSVLVRQPHAALAAAATT----GVLAHKWNAAVDSKRLDSAIYRP-HAHSALPQPSSSQTPA---RVDLRFVKTVASFLRVAICALPSQEASVLALVGCCWPPAAGSTCGLVPMGDTSSKAIVARDRRSFIRLAVVDIATMMFPMSFVNNSLRYSIARLKLLMHRCLSLYLHEKYLANNTFCKLSNLGARIRNVDQRLPVDIGRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMI 239
            MTNALSVL  QP AALAA A      G+LAHKWNAAV +KRL+    R    H       S + PA   +VD +F   + +F+++ I  + S E   L+ V       +         G    KAIV RD+ +FI+ A++DIATMMFPMSFVNNSL+Y I+RLK+LM R LS++ H+KYL++NTF K+SNL +RIRN+DQ L VDI + CSS+ DLY NISKP FDI+LFSR+L+RSLGPSGP+CMI
Sbjct:    1 MTNALSVLSTQPRAALAATAXXXXAGGLLAHKWNAAVQNKRLEKGFLRASRRHRVGDDTDSDEKPALVAKVDAQFFANLTAFVKICIPGVASTEFLALSTVAALLGARSYLDLWASSNGGHVVKAIVGRDKDAFIQKAIIDIATMMFPMSFVNNSLKYMISRLKVLMRRRLSMHFHDKYLSSNTFYKVSNLDSRIRNIDQLLTVDIEKFCSSMADLYSNISKPSFDIILFSRQLSRSLGPSGPICMI 247          
BLAST of Gcaud8440.t1 vs. uniprot
Match: A0A7S1XES6_9RHOD (Probable ATP-dependent transporter ycf16 n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XES6_9RHOD)

HSP 1 Score: 154 bits (390), Expect = 1.080e-39
Identity = 90/198 (45.45%), Postives = 122/198 (61.62%), Query Frame = 0
Query:   45 PHAHSALPQPSSSQT---PARVDLRFVKTVASFLRVAICALPSQEASVLALVGCCWPPAAGSTCGLVPMGDTSSKAIVARDRRSFIRLAVVDIATMMFPMSFVNNSLRYSIARLKLLMHRCLSLYLHEKYLANNTFCKLSNLGARIRNVDQRLPVDIGRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMI 239
            P +   L +  SS T    A+VDL+F K +  FLR+ I  + S E  + A         +         G    KAIV RD++ F+R AV DI  MMFP++ VN  L+YS++ LK +M + LSL+ H+ YLANNTF K++NL  R+RN+DQ L  D+ R C+SL DLY N+SKP+ D++LFS +LARSLG SGP  MI
Sbjct:   59 PPSSGRLRRSRSSGTFGRKAKVDLQFFKNLWEFLRICIPGVRSVEFFMTATTAVLLVSRSYLDIWTSENGGEVVKAIVGRDKQEFLRRAVRDILMMMFPIAAVNALLKYSLSLLKTMMRKKLSLHFHDSYLANNTFYKVTNLDHRMRNIDQLLTTDVERFCTSLADLYSNLSKPLLDVILFSVKLARSLGTSGPAIMI 256          
BLAST of Gcaud8440.t1 vs. uniprot
Match: A0A7J7IG11_9RHOD (Probable ATP-dependent transporter ycf16 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IG11_9RHOD)

HSP 1 Score: 147 bits (371), Expect = 6.300e-37
Identity = 83/186 (44.62%), Postives = 117/186 (62.90%), Query Frame = 0
Query:   54 PSSSQTPARVDLRFVKTVASFLRVAICALPSQEASVLALVGCCWPPAAGSTCGLVPMGDTSSKAIVARDRRSFIRLAVVDIATMMFPMSFVNNSLRYSIARLKLLMHRCLSLYLHEKYLANNTFCKLSNLGARIRNVDQRLPVDIGRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMI 239
            P+SS+T  +VD +F   +  F+R+ I +L S+E  V   +G            +        KAIVARDR +F+R  V DI+ MMFPMS VNN L+  I+ L+++  + L+LY HE YL+  TF K +NL  RI+N+DQ +  D+ + C++LV+LY N+SKP+ D+VLFS RLARSLG  GP  MI
Sbjct:  142 PTSSRTNVKVDRKFFAQLWRFVRIVIPSLRSRECWVTLGIGATLVARTRLDIWVSDNAGDIVKAIVARDRDAFMRKCVRDISIMMFPMSLVNNVLKLLISLLRVMARKRLTLYFHELYLSQLTFYKATNLDNRIQNIDQLVTQDVEKFCTTLVNLYSNVSKPLLDVVLFSSRLARSLGAKGPAIMI 327          
BLAST of Gcaud8440.t1 vs. uniprot
Match: A0A7S0BFE8_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BFE8_9RHOD)

HSP 1 Score: 138 bits (347), Expect = 1.700e-36
Identity = 71/131 (54.20%), Postives = 95/131 (72.52%), Query Frame = 0
Query:  111 GDTSSKAIVARDRRSFIRLAVVDIATMMFPMSFVNNSLRYSIARLKLLMHRCLSLYLHEKYLAN--NTFCKLSNLGARIRNVDQRLPVDIGRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMI 239
            G    KAIV RD++ FI  A+ D+  MMFP+S VNN L+Y+++RLK++M + LSL+ HEKYL    NTF K+SNL +RIRN+DQ +  D+ R C+S  DLY N+SKP+ DIVLF+ RL++SLG  GP  MI
Sbjct:   42 GGEIVKAIVGRDKKMFIIRALRDLGLMMFPISAVNNLLKYTLSRLKVMMRKQLSLHFHEKYLDPRVNTFYKVSNLDSRIRNIDQLMTTDVERFCTSSADLYSNLSKPLLDIVLFTHRLSKSLGLGGPSAMI 172          
BLAST of Gcaud8440.t1 vs. uniprot
Match: A0A7S3A428_9RHOD (Probable ATP-dependent transporter ycf16 n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A428_9RHOD)

HSP 1 Score: 145 bits (365), Expect = 3.350e-36
Identity = 93/241 (38.59%), Postives = 136/241 (56.43%), Query Frame = 0
Query:    1 MTNALSVLVRQPHAALAAAATTGVLAHKWNAAVDSKRLDSAIYRPHAHSALPQPSSSQTPARVDLRFVKTVASFLRVAICALPSQEASVLALVGCCWPPAAGSTCGLVPMGDTSSKAIVARDRRSFIRLAVVDIATMMFPMSFVNNSLRYSIARLKLLMHRCLSLYLHEKYLAN--NTFCKLSNLGARIRNVDQRLPVDIGRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMI 239
            M  A S L +   A  A  A T + A++W+    ++R  ++         +     S    +VD  F + +  FLR+ +  + S+E   L  V       +     +   G    KAIV RD++ FI  A+ D+  MMFP++ VNN LRY+++RLK++M + LSL+ HEKYL    NTF K+SNL +RIRN+DQ +  D+ R C+S  DLY N+SKP+ DIVLF+ RL++SLG  GP  MI
Sbjct:    4 MAQAFSRLRKGGVAVGAVVAATALAAYRWHMNETARRQMNSNREQRIKRKVKDGKQS---LQVDKEFAQNLFKFLRICVPGIRSKEFRYLIAVAGLLLLRSYLDIWISDNGGEIVKAIVGRDKKMFIIRALRDLGLMMFPIAAVNNLLRYTLSRLKVMMRKQLSLHFHEKYLDPRVNTFYKVSNLDSRIRNIDQLMTTDVERFCTSSADLYSNLSKPLLDIVLFTHRLSKSLGLGGPSAMI 241          
BLAST of Gcaud8440.t1 vs. uniprot
Match: A0A7V5I717_9BACT (ATP-binding cassette domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5I717_9BACT)

HSP 1 Score: 145 bits (365), Expect = 4.040e-36
Identity = 87/203 (42.86%), Postives = 125/203 (61.58%), Query Frame = 0
Query:   41 AIYRPHAHSALPQ-PS---SSQTPARVDLRFVKTVASFLRVAICALPSQEASVLALVGCCWPPAAGSTCGLVPMGDTSSKAIVARDRRSFIRLAVVDIATMMFPMSFVNNSLRYSIARLKLLMHRCLSLYLHEKYLANNTFCKLSNLGARIRNVDQRLPVDIGRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMI 239
            AI R  + +AL   PS   S ++  RVD +F   +  F+R+ + ++ S+E  V+  +G            +        KAIVARDR +F+R  V DI+ MMFPMSFVNN L+  I+ L+++  + L+LY HE YL+  TF K +NL  RI+N+DQ +  D+ + C++LV+LY N+SKP+ D+VLFS RLARSLG  GP  MI
Sbjct:  118 AISRAPSMAALKSIPSDAASGRSSVRVDRKFFSQLWRFIRIIVPSIRSREFWVVLGIGVTLVIRTRLDIWVSDNAGDIVKAIVARDREAFMRKCVRDISIMMFPMSFVNNILKLQISLLRVMARKRLTLYFHELYLSQLTFYKATNLDNRIQNIDQLVTQDVEKFCTTLVNLYSNVSKPLLDVVLFSSRLARSLGAKGPAVMI 320          
BLAST of Gcaud8440.t1 vs. uniprot
Match: A0A1X6NN65_PORUM (Probable ATP-dependent transporter ycf16 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NN65_PORUM)

HSP 1 Score: 144 bits (364), Expect = 6.240e-36
Identity = 83/172 (48.26%), Postives = 112/172 (65.12%), Query Frame = 0
Query:   63 VDLRFVKTVASFLRVAICALPSQEASVLALVGCCWPPAAGSTCGL--VPMGDTSSKAIVARDRRSFIRLAVVDIATMMFPMSFVNNSLRYSIARLKLLMHRCLSLYLHEKYLANNTFCKLSNLGARIRNVDQRLPVDIGRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGP 232
            VD  FV  +  FL+V +  + S+E ++LA++       A S C +     G    KAIV+RDRR+F R A+ DI  M +PMS VN  LRY +ARLK+     LS + H+KYL+ NT+  +SNL +RI+NVDQ L  DI R C++L D+Y N+SKP  D+VLFSRRL+RSLGP
Sbjct:  153 VDRAFVVQLWKFLKVLVPGVRSREFALLAIIASLL--GARSYCDIWATDNGGRVVKAIVSRDRRAFYRRAIRDIFIMAWPMSAVNTGLRYFLARLKVAFRLRLSNHFHDKYLSGNTYYAVSNLDSRIQNVDQLLTTDIDRFCTALADIYSNLSKPALDVVLFSRRLSRSLGP 322          
BLAST of Gcaud8440.t1 vs. uniprot
Match: A0A7S0ZH65_9RHOD (Probable ATP-dependent transporter ycf16 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZH65_9RHOD)

HSP 1 Score: 124 bits (312), Expect = 5.530e-29
Identity = 71/178 (39.89%), Postives = 101/178 (56.74%), Query Frame = 0
Query:   62 RVDLRFVKTVASFLRVAICALPSQEASVLALVGCCWPPAAGSTCGLVPMGDTSSKAIVARDRRSFIRLAVVDIATMMFPMSFVNNSLRYSIARLKLLMHRCLSLYLHEKYLANNTFCKLSNLGARIRNVDQRLPVDIGRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMI 239
            +VD  FV+++  F+R+ +  + S E  ++  V       +         G    KAIV RD+  FIR A+ D+  MMFP++ VNN L+Y I+RLK++M R LSL+ H  Y                  VDQ L  DI R CSS+ DLY N++KP+ DIVLFS RL+++LG +GP+ MI
Sbjct:   76 KVDWDFVRSLFKFIRICVPGVLSSEFRMVCAVAVLLVCRSWLDIWTSDNGGDVVKAIVGRDKAEFIRRAIRDLLLMMFPIALVNNLLKYCISRLKIMMRRRLSLHFHSLYXXXXXXXXXXXXXXXXXXVDQLLTTDIDRFCSSIADLYSNLTKPLLDIVLFSHRLSKTLGAAGPVGMI 253          
BLAST of Gcaud8440.t1 vs. uniprot
Match: A0A1Y2GQN2_9FUNG (ABC transporter transmembrane region 2-domain-containing protein n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A1Y2GQN2_9FUNG)

HSP 1 Score: 117 bits (294), Expect = 1.310e-26
Identity = 71/187 (37.97%), Postives = 105/187 (56.15%), Query Frame = 0
Query:   55 SSSQTPARV--DLRFVKTVASFLRVAICALPSQEASVLALVGCCWPPAAGSTCGLVPMGDTSSKAIVARDRRSFIRLAVVDIATMMFPMSFVNNSLRYSIARLKLLMHRCLSLYLHEKYLANNTFCKLSNLGARIRNVDQRLPVDIGRLCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMI 239
            S+   P RV  D  FV+ +   L + I  L S+EA +LA +                +  +  KAIV+RDR+ FI  A+++   MM+PMS VNNSL+++I+ L L     L+ + H +YL   TF K+SN+  RI+N DQ L  DI +   +L  LY +I+KP+ DIVLF+ +L  ++G   P  MI
Sbjct:   60 SAGNKPRRVGVDRHFVEQLKKLLPICIPGLASREAGLLAALATILIARTWLDVWFSGLNGSVVKAIVSRDRKRFIAKAMIEFGLMMWPMSIVNNSLKFTISALALSFRERLTKFAHNQYLDGITFYKVSNIDNRIQNADQLLTQDIDKFADNLSHLYSDIAKPLVDIVLFAYKLGEAIGGEAPFYMI 246          
The following BLAST results are available for this feature:
BLAST of Gcaud8440.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J399_9FLOR1.400e-8163.52ATP-binding cassette sub-family D member 3 n=1 Tax... [more]
R7QFQ6_CHOCR3.000e-6652.63ATP-binding cassette, sub-family D (ALD), member 3... [more]
A0A7S1XES6_9RHOD1.080e-3945.45Probable ATP-dependent transporter ycf16 n=2 Tax=C... [more]
A0A7J7IG11_9RHOD6.300e-3744.62Probable ATP-dependent transporter ycf16 n=1 Tax=C... [more]
A0A7S0BFE8_9RHOD1.700e-3654.20Hypothetical protein (Fragment) n=2 Tax=Rhodosorus... [more]
A0A7S3A428_9RHOD3.350e-3638.59Probable ATP-dependent transporter ycf16 n=4 Tax=R... [more]
A0A7V5I717_9BACT4.040e-3642.86ATP-binding cassette domain-containing protein n=2... [more]
A0A1X6NN65_PORUM6.240e-3648.26Probable ATP-dependent transporter ycf16 n=1 Tax=P... [more]
A0A7S0ZH65_9RHOD5.530e-2939.89Probable ATP-dependent transporter ycf16 n=1 Tax=T... [more]
A0A1Y2GQN2_9FUNG1.310e-2637.97ABC transporter transmembrane region 2-domain-cont... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011527ABC transporter type 1, transmembrane domainPFAMPF06472ABC_membrane_2coord: 75..238
e-value: 3.8E-32
score: 111.7
NoneNo IPR availablePANTHERPTHR11384:SF58ABC TRANSPORTER, CONSERVED SITEcoord: 50..238
NoneNo IPR availablePANTHERPTHR11384ATP-BINDING CASSETTE, SUB-FAMILY D MEMBERcoord: 50..238
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..239
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2836_length_4601_cov_3.731264contigNODE_2836_length_4601_cov_3.731264:3324..4043 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8440.t1Gcaud8440.t1Gracilaria caudata M_176_S67 malemRNANODE_2836_length_4601_cov_3.731264 3324..4043 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8440.t1 ID=Gcaud8440.t1|Name=Gcaud8440.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=240bp
MTNALSVLVRQPHAALAAAATTGVLAHKWNAAVDSKRLDSAIYRPHAHSA
LPQPSSSQTPARVDLRFVKTVASFLRVAICALPSQEASVLALVGCCWPPA
AGSTCGLVPMGDTSSKAIVARDRRSFIRLAVVDIATMMFPMSFVNNSLRY
SIARLKLLMHRCLSLYLHEKYLANNTFCKLSNLGARIRNVDQRLPVDIGR
LCSSLVDLYCNISKPVFDIVLFSRRLARSLGPSGPLCMI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011527ABC1_TM_dom