Gcaud8437.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8437.t1
Unique NameGcaud8437.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length109
Homology
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BLAST of Gcaud8437.t1 vs. uniprot
Match: A0A2V3J3F1_9FLOR (Putative RNA-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3F1_9FLOR)

HSP 1 Score: 166 bits (419), Expect = 6.870e-47
Identity = 93/106 (87.74%), Postives = 96/106 (90.57%), Query Frame = 0 
Query:    2 FGFVTYANEASVNAVVGPGKSNADHEIMGKCVEVKRAEPKGAWQDRRHNRDSYNQGGGRAGGGVSQNEALPHSGANGSXXXXXXXXXXAYYSNYPASLAEQYSAYY 107
            FGFVT+ANEA+VNAVVGPGKSN DHEIMGKCVEVKRAEPKG  QDRRHNRDSYNQG GRAG   SQN+ LPHSGANG XXXXXXXXXXAYYSNYPASLAEQY AYY
Sbjct:  274 FGFVTFANEATVNAVVGPGKSNTDHEIMGKCVEVKRAEPKGVSQDRRHNRDSYNQGAGRAGASASQNDGLPHSGANGXXXXXXXXXXXAYYSNYPASLAEQYGAYY 379
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BLAST of Gcaud8437.t1 vs. uniprot
Match: R7QHG3_CHOCR (Putative Heterogeneous nuclear ribonucleoprotein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHG3_CHOCR)

HSP 1 Score: 99.0 bits (245), Expect = 5.480e-22
Identity = 68/108 (62.96%), Postives = 74/108 (68.52%), Query Frame = 0 
Query:    2 FGFVTYANEASVNAVVGPGKSNADHEIMGKCVEVKRAEPKGAWQDRRHNRDSYNQGGGRAGGGVSQNEALPHSGANGSXXXXXXXXXXAY--YSNYPASLAEQYSAYY 107
            FGFVT+ +EA+VN+VVGPGKSN DHEIMGKCVEVKRAEPKGA  DRR+NRD+Y                         XXXXXXXXXX    YSNYPASLAEQY AYY
Sbjct:  284 FGFVTFGSEATVNSVVGPGKSNTDHEIMGKCVEVKRAEPKGAPNDRRNNRDNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSNYPASLAEQYGAYY 391
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BLAST of Gcaud8437.t1 vs. uniprot
Match: A0A7S1XHS3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XHS3_9RHOD)

HSP 1 Score: 57.4 bits (137), Expect = 2.510e-7
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0 
Query:    2 FGFVTYANEASVNAVVGPG-KSNADHEIMGKCVEVKRAEPK 41
            FGFVT+A+ ASV AVVG G KSN DHEIM K VEVK AEP+
Sbjct:  242 FGFVTFADPASVTAVVGVGRKSNMDHEIMNKVVEVKIAEPR 282
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BLAST of Gcaud8437.t1 vs. uniprot
Match: A0A7S2ZPG2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZPG2_9RHOD)

HSP 1 Score: 53.1 bits (126), Expect = 7.360e-6
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 0 
Query:    2 FGFVTYANEASVNAVVGPGKSNADHEIMGKCVEVKRAEPKGAWQDRRHNRDSYNQG 57
            FGFVT+ +EA++  + G    +A H+I+GK VEVK+AEPK + + RR   +    G
Sbjct:  272 FGFVTFEDEAAIADLFGSSDGSAHHDILGKVVEVKKAEPKQSLESRRSRENKQTSG 327
The following BLAST results are available for this feature:
BLAST of Gcaud8437.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J3F1_9FLOR6.870e-4787.74Putative RNA-binding protein n=1 Tax=Gracilariopsi... [more]
R7QHG3_CHOCR5.480e-2262.96Putative Heterogeneous nuclear ribonucleoprotein n... [more]
A0A7S1XHS3_9RHOD2.510e-773.17Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A7S2ZPG2_9RHOD7.360e-642.86Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..43
e-value: 7.7E-6
score: 27.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..54
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2836_length_4601_cov_3.731264contigNODE_2836_length_4601_cov_3.731264:978..1303 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8437.t1Gcaud8437.t1Gracilaria caudata M_176_S67 malemRNANODE_2836_length_4601_cov_3.731264 978..1303 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8437.t1 ID=Gcaud8437.t1|Name=Gcaud8437.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=109bp
XFGFVTYANEASVNAVVGPGKSNADHEIMGKCVEVKRAEPKGAWQDRRHN
RDSYNQGGGRAGGGVSQNEALPHSGANGSGANAAAAAAAAYYSNYPASLA
EQYSAYYK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf