Gcaud8433.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8433.t1
Unique NameGcaud8433.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length333
Homology
BLAST of Gcaud8433.t1 vs. uniprot
Match: A0A2V3J5A0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5A0_9FLOR)

HSP 1 Score: 96.3 bits (238), Expect = 8.330e-19
Identity = 85/356 (23.88%), Postives = 155/356 (43.54%), Query Frame = 0
Query:    1 MVLITIRAPIVNLIVTVICLVVEVAFLAAALWTFQFITCRRLVRQQSIRILSQKRVVAVIAFSATLMFVALETLISIFSEAGAQPLVSREDCIRNMALGVHTEEYETEGEVIHY--GCMTINGTEVTHHQGNYSLETGSLTCGT--------EPLYSYVIGERKNVSWE----EGERECNFRACSVV-------------VLRGNLLYISERIDFDFRGEPIPAMLTDVTPINISAEDLKRMSNITISGYDIGIHEESDIRRRALAAPLKTRCDFERAGKQATTIPLSVIVISATVWLLSILFFLLSRLFKNRVFFNSSDPMHWASFTWHDVEAANGNDPQMTVSQQNGNRRIRIT 329
            MVLI +++  V+LI T+I L+ E++ L A L    +  C  L +   + +   +     +    T  F A+E L+S +S+   +     + C+    L   + +  T  E I     C+  N + +    GNYS+ET  + C          EP  S  IG    VS E    +   +C    C V+             V   ++ +  E         PI  + T +     + E L + +   +  YD  +++  ++RR       +  C F+R   +AT +P  +IV  +TVW++S+  + ++ L   RVF++ S+P+HWA  T+   +     DP ++   +NG+  + ++
Sbjct:    1 MVLIPLKSQYVSLINTIISLLTELSLLKALLRVNNYCECHALQKGHHVSVTRHQNRATCLVLVTTAAFFAIELLLSFYSDPAVKLTFQSQPCVAVETLTRRSGDPGTSLEEIGIVLSCVKTNESNIFLRVGNYSMETRKVECAESATLMFTLEPHVSLPIGTAAAVSSENPFPDPLLKCADGFCVVIQTASYQSSSSDTTVWFSDVFFADEVSMLQIDNSPIKFLNTTIFSAQNNTELLPKFAERLLQAYDENLNDPFELRRLMFLGSERDTCQFQRTS-EATEVPPFIIVSVSTVWVISLAAYAMTLLLSRRVFYDISNPVHWAKRTYRRTDEPVHGDPSVSRVLENGHHVMYVS 355          
BLAST of Gcaud8433.t1 vs. uniprot
Match: A0A2V3J5C2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 83.6 bits (205), Expect = 2.440e-14
Identity = 91/352 (25.85%), Postives = 154/352 (43.75%), Query Frame = 0
Query:    1 MVLITIRAPIVNLIVTVICLVVEVAFLAAALWTFQFITCRRLVRQQSIRILSQKRVVAVIAFSATLMFVALETLISIFSEAGAQPLVSREDCIRNMALGVHTE--EYETEGEVIHYGCMTINGTEVTHHQGNYS----LETGSLTCGTEPLYSYVIGERKNVSW-------------EEGERECNFRACSVVVLRGNLLYISERIDFDFRGEPIPAMLT-DVTPINISAEDLKRMSNITISGYDI---GIHEESDIRRRALAAPLKTRCDFERAGKQATTIPLSVIVISATVWLLSILFFLLSRLFKNRVFFNSSDPMHWASFTWHDVEAANGNDPQMTVSQQNGNRRIRIT 329
            MVLI +++   +LIVTVI  + E+A L+A L   +++ CR L     + +   +     +  +ATL FV LE   S +S+   +  + R++C    AL V        T+  V+   C+ IN T    H GN S    +  G    G + ++     E+K V +             +E    C   +C  V   GN +  ++ +  +     +   +T  V    IS       S       D+   G+ +   +RR   A    T+C+F +    AT +    I      W LSI  F+ S   + R+F++ SDP+HWA  T  D + ++ ++P +T   +NG+R + +T
Sbjct:    1 MVLIPLKSQYTSLIVTVISGIAELALLSAVLVFNKYLECRALQNGGKVNVRHHRFRTKALTVAATLAFVFLEVFSSFYSDPDDKTELVRKNCTSLDALTVQQGLLNISTQTTVVGVKCIGINSTLFWQHAGNISDGRNIGNGG-NIGDDEVFEC---EKKEVLYTANVERAPDEPVPDEYVVGCVGTSCVFVYRSGNEVTFTDFVHSEDVSRVLNESITLPVWKTTISYNVTGLESAFATRAVDLLSQGVTDGFTLRRGVFAGSAITQCNF-KTFSDATRVRKGFIYAIVIAWALSISAFVGSFAIRRRIFYDMSDPLHWAQKTIRDNDLSDTDNPVVTTVYENGSRALLVT 347          
BLAST of Gcaud8433.t1 vs. uniprot
Match: A0A2V3IN83_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN83_9FLOR)

HSP 1 Score: 83.2 bits (204), Expect = 3.100e-14
Identity = 81/334 (24.25%), Postives = 146/334 (43.71%), Query Frame = 0
Query:   12 NLIVTVICLVVEVAFLAAALWTFQFITCRRLVRQQSIRILSQKRVVAVIAFSATLMFVALETLISIFSEAGAQPLVSREDCIR-----NMALGVHTEEYETEGEVIHYGCMTINGTE-----VTHHQGNYSL--ETGSLTCGTEPLYSYVIGER-KNVSWEEGERECNFRACSVVVLRGNLLYISERID---FDFRGEPIPAMLTDVTPINISAEDLKRMSNITISGYDIGIHEESDIRRRALAAPLKTRCDFERAGKQATTIPLSVIVISATVWLLSILFFLLSRLFKNRVFFNSSDPMHWASFT-WHDVEAANGNDPQMTVSQQNGNRRIRI 328
             L+ T++  + E+  ++A L       C  L  ++ + I S      +I   A LMF+ALETL+S+ ++     + +   C++     + AL V +     E E +   C+ +   E     +  + GNYS   E   + C  + L  Y +  + K +     E+ C    C  +  + + ++ S  +    F+   E      T+  P  + +  L   +   +  Y  GI EE  IRR+   +  + +C+     K+ T +P  +I I+A  W  S + F L+R+ K+ +F+N SDP+HW   T W   E  +G          +G RR+ +
Sbjct:   25 QLLFTIVSALSEIGLISAVLVILTKKECHTLSTERPVSIKSHSLRWRLIPVVAMLMFIALETLVSVHTKTHIHHVKNSHKCVQVDLRTSEALEVESS-LNKEEEAVMLNCVKMTPAEDANFNIEVYPGNYSRSGEKIFVDCSADWLMKYKLDTKGKGILEPNAEQHCRNGFCVFLYSQESKVFFSPPLPSARFNHTNE-YTGYWTEFIPGAVPS--LNSTATYLLLLYQKGILEEIQIRRKLFMSAERGQCEMTNGSKEHTLVPYWLISITALSWFCSAILFALTRVLKSGIFYNISDPLHWTRRTYWAFNEGVDGKVTHFRSCLVDGVRRVYL 354          
BLAST of Gcaud8433.t1 vs. uniprot
Match: A0A2V3IT05_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 72.8 bits (177), Expect = 1.260e-10
Identity = 80/367 (21.80%), Postives = 153/367 (41.69%), Query Frame = 0
Query:    1 MVLITIRAPIVNLIVTVICLVVEVAFLAAALWTFQFITCRRLVRQQSIRILSQKRVVAVIAFSATLMFVALETLISIFSEAGAQPLVSREDCIRNMALGVH---TEEYETEGEVIHYGCMTINGTEVTHHQGNYSLETGS---LTCGTEPLYSYVIGERKNVSWEE----------------------GERECNFRACSVV-VLRGNLL-----YISERIDFDFRGEPIPAMLTDV---TPINISAEDLKR-MSNITISGYDIGIHEESDIRRRALAAPLKTRCDFERAGKQATTIPLSVIVISATVWLLSILFFLLSRLFKNRVFFNSSDPMHWASFTWHDVEAANGNDPQMTVSQQNGNRRIRIT 329
            MV I +++  V+LIVT+I  + E+    A L   ++  C  L + + + +   +     +A  A ++F+ LE ++S FS+   +     ++C+    + +    T +   E  ++   C+ I         GN+SL   +   + CG   LY Y   +    +                         GE+    R C+ V  L  N +     Y+S  +     G  +   +      T +  +   L R  +   +  YD  + +  +IR+R      + +C FE   K  TT+PL ++      W+LS L F  + L +  +F++ SDP+HWA  T+  ++     +P +T   ++G R + ++
Sbjct:    1 MVEIPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVRLHRIRAKFLAVLAMVVFIFLEVIMSFFSDPAIEIKFRTDECLAVDRIDLREGFTGDTNDEDFIL-IRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEYPNEDDLQFTLTNVTRTGGTDTDLVLECILPTPAVGEKPPTERLCAAVRQLPPNSIGFTNVYLSAAVRESEVGPLVNQQVVIPFLETSVRYNTSGLSRNFARRLLRAYDKDVTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLLRRSIFYDMSDPLHWAQRTYRHIDEPIVGNPVVTSVYEHGERLMYVS 366          
The following BLAST results are available for this feature:
BLAST of Gcaud8433.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J5A0_9FLOR8.330e-1923.88Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5C2_9FLOR2.440e-1425.85Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IN83_9FLOR3.100e-1424.25Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IT05_9FLOR1.260e-1021.80Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 35..54
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 280..332
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 258..279
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..257
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..34
NoneNo IPR availableTMHMMTMhelixcoord: 56..78
NoneNo IPR availableTMHMMTMhelixcoord: 257..279
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2026_length_7155_cov_4.523924contigNODE_2026_length_7155_cov_4.523924:1523..2521 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8433.t1Gcaud8433.t1Gracilaria caudata M_176_S67 malemRNANODE_2026_length_7155_cov_4.523924 1523..2521 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8433.t1 ID=Gcaud8433.t1|Name=Gcaud8433.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=333bp
MVLITIRAPIVNLIVTVICLVVEVAFLAAALWTFQFITCRRLVRQQSIRI
LSQKRVVAVIAFSATLMFVALETLISIFSEAGAQPLVSREDCIRNMALGV
HTEEYETEGEVIHYGCMTINGTEVTHHQGNYSLETGSLTCGTEPLYSYVI
GERKNVSWEEGERECNFRACSVVVLRGNLLYISERIDFDFRGEPIPAMLT
DVTPINISAEDLKRMSNITISGYDIGIHEESDIRRRALAAPLKTRCDFER
AGKQATTIPLSVIVISATVWLLSILFFLLSRLFKNRVFFNSSDPMHWASF
TWHDVEAANGNDPQMTVSQQNGNRRIRITSYT*
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