Gcaud8098.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8098.t1
Unique NameGcaud8098.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length334
Homology
BLAST of Gcaud8098.t1 vs. uniprot
Match: A0A2V3J593_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J593_9FLOR)

HSP 1 Score: 307 bits (786), Expect = 4.020e-100
Identity = 176/291 (60.48%), Postives = 230/291 (79.04%), Query Frame = 0
Query:   43 PSLLLPLSVLLDQYSAELELEEASSVSAVSPSSPSLSHSLSPSLKKLASDAIRVSADTLSKQTELRRWEQLHHASTHETERIARLYVDQQQHSQTLDAELSRSRRDMSRLQARHLLCMREVQQLRDCVATLHAAHTLDANINALLIGDQSCEIDELKRRLRDADRHRQLLKKLLQRAAPKGVSRRDFDSSDPVHSGSSSEQHRRSQDRENIPVNKPSASEGKIIAGLVKRVSSRDPVKQKELNRLQRSKQNLLDAYQRRNSTTLDNVVRRTSQMSIASATAFSGSPVRSTD 333
            PSL+ PL +LLDQY+ EL+L+E S V+  SP SP+    +S S++KLA DA+ +S +TLS+Q ELRRW+Q   AS  E++++  LY ++  +S+ L A+LS SRRDMS LQARHL C+REVQQLRDCV TLH AH LDA+IN+LLI DQ CEI+ELKRRL DADRHRQLL+KLLQRAAPK + RR+ D  +     SSS +  R++++ +   +  ++S+ K+I GLV+RVSSR+PVK+++L RLQ+S+++LLDAYQRRNSTTL+NVVRRTSQMSIASATA+S SPVRSTD
Sbjct:   45 PSLVFPLGLLLDQYAVELDLDEDSPVTQ-SPPSPT---QISSSMRKLAFDAVHMSNETLSRQAELRRWQQWQRASAEESQKLHNLYQEELANSERLSAQLSGSRRDMSTLQARHLACLREVQQLRDCVGTLHTAHKLDASINSLLIDDQECEIEELKRRLGDADRHRQLLRKLLQRAAPKVLLRRELDIKNEERYRSSSNRRMRTREQGSTYTDVDTSSDAKVINGLVRRVSSRNPVKRRQLARLQKSRKHLLDAYQRRNSTTLENVVRRTSQMSIASATAYSDSPVRSTD 331          
BLAST of Gcaud8098.t1 vs. uniprot
Match: A0A2V3IGX6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGX6_9FLOR)

HSP 1 Score: 248 bits (634), Expect = 5.060e-77
Identity = 154/303 (50.83%), Postives = 213/303 (70.30%), Query Frame = 0
Query:   43 PSLLLPLSVLLDQYSAELELEEASSVSAVSPSSPSLSHSLSPSLKKLASDAIRVSADTLSKQTELRRWEQLHHASTHETERIARLYVDQQQHSQTLDAELSRSRRDMSRLQARHLLCMREVQQLRDCVATLHAAHTLDANINALLIGDQSCEIDELKRRLRDADRHRQLLKKLLQRAAPKGVSRRDFDSSDPVHSGSSSEQHRRSQDRENIPVNKPSASEGKIIAGLVKRVSSRDPVKQKELNRLQRSKQNLLDAYQRRNS------------TTLDNVVRRTSQMSIASATAFSGSPVRSTD 333
            PS   PL+VLLDQY+ EL+L++A  V+  SPS PS+S    P+++KLA DA+ +S +TL+KQTELR+WE+    S+ E +R++ LY  +  +S+ L+A+LS S+ DM+ LQARHL+C+R+V+QLRDCV+TLHAAH LDA+IN+LLI DQ  EI ELK RL DADRHRQLL+KLL R APK V +R  + ++   +  +S +  R++++ N P    +AS   +++GL +RVSS   VK K+L +LQ+SKQ+LLDA+Q+RNS            TTLDN V   S MSIA A ++S SP  STD
Sbjct:   45 PSSFYPLTVLLDQYAVELDLDDAYLVTRPSPSPPSIS----PTIRKLAFDAVGMSMETLTKQTELRQWEEWQCLSSKEAQRLSTLYQGELANSKKLNAQLSCSQNDMTTLQARHLICLRQVEQLRDCVSTLHAAHMLDASINSLLIEDQEREISELKSRLADADRHRQLLRKLLDRVAPKAVLQRQSEMTEKNVNRPNSGRRLRAREQGNTPAVTGAASSANVMSGLCRRVSSLSLVKGKKLAQLQKSKQDLLDAFQKRNSSLLHSRKVSPGSTTLDNAVFSISPMSIALAASYSESPGCSTD 343          
The following BLAST results are available for this feature:
BLAST of Gcaud8098.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J593_9FLOR4.020e-10060.48Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IGX6_9FLOR5.060e-7750.83Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 188..215
NoneNo IPR availableCOILSCoilCoilcoord: 135..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 222..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_211_length_36859_cov_4.689676contigNODE_211_length_36859_cov_4.689676:32155..33156 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8098.t1Gcaud8098.t1Gracilaria caudata M_176_S67 malemRNANODE_211_length_36859_cov_4.689676 32155..33156 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8098.t1 ID=Gcaud8098.t1|Name=Gcaud8098.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=334bp
MPLPPPPPQKPPPAPPSPRTPSHTSPPTTPPTTPSSSACSTPPSLLLPLS
VLLDQYSAELELEEASSVSAVSPSSPSLSHSLSPSLKKLASDAIRVSADT
LSKQTELRRWEQLHHASTHETERIARLYVDQQQHSQTLDAELSRSRRDMS
RLQARHLLCMREVQQLRDCVATLHAAHTLDANINALLIGDQSCEIDELKR
RLRDADRHRQLLKKLLQRAAPKGVSRRDFDSSDPVHSGSSSEQHRRSQDR
ENIPVNKPSASEGKIIAGLVKRVSSRDPVKQKELNRLQRSKQNLLDAYQR
RNSTTLDNVVRRTSQMSIASATAFSGSPVRSTD*
back to top