Gcaud8069.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8069.t1
Unique NameGcaud8069.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length257
Homology
BLAST of Gcaud8069.t1 vs. uniprot
Match: A0A2V3ILG7_9FLOR (Putative ATP-dependent RNA helicase ddx52 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILG7_9FLOR)

HSP 1 Score: 307 bits (787), Expect = 3.790e-99
Identity = 157/211 (74.41%), Postives = 182/211 (86.26%), Query Frame = 0
Query:    1 MKDVKRVTVGASGYGGSFAVDEAVSHIDQRFVFVGGQGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELVYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQTVINYDMPSSSAAYVHRIGRTXXXXXSGNAVTLFTEEDKKLVAGVVRVARASGANLPDWLVKLGARVRRDEVKRLEKRPPKRKQVG 211
            M D+KRVTVGAS YGGSFAVDEAV HI+QRFVFVGG+ EQGKVMAVRNL+R+G++ PVL+FVQ+KERAA LFREL+YDGVHVDAIH+DRT AAR +AV RFR G  WVLIATDVL+RGLDFLAV+TVINYD+PSS+AAYVHRIGR       G A++LFTEED KL+  VVRVARASGA +P+WL++ G RVR DEV+RLE+RPPKR  VG
Sbjct:  259 MNDMKRVTVGASAYGGSFAVDEAVKHIEQRFVFVGGRAEQGKVMAVRNLLRNGVQAPVLLFVQSKERAAQLFRELLYDGVHVDAIHSDRTVAARETAVQRFREGNTWVLIATDVLSRGLDFLAVRTVINYDVPSSAAAYVHRIGRCGRNGRHGVALSLFTEEDLKLIGAVVRVARASGALVPEWLLRAGGRVRADEVRRLERRPPKRAAVG 469          
BLAST of Gcaud8069.t1 vs. uniprot
Match: R7QFR3_CHOCR (DEAD (Asp-Glu-Ala-Asp) box polypeptide n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFR3_CHOCR)

HSP 1 Score: 260 bits (665), Expect = 3.220e-80
Identity = 134/211 (63.51%), Postives = 176/211 (83.41%), Query Frame = 0
Query:    1 MKDVKRVTVGASGYGGSFAVDEAVSHIDQRFVFVGGQGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELVYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQTVINYDMPSSSAAYVHRIGRTXXXXXSGNAVTLFTEEDKKLVAGVVRVARASGANLPDWLVKLGARVRRDEVKRLEKRPPKRKQVG 211
            +K  K++ +    YGGS AV    + I+Q+F+FVGG+GEQGKVMAVR L+++G++ P+L+FVQTK+RAA+L+RELVYDGV V+AIHADR+  AR  AV RFR G++WVLIATDVLARGLDFLAV++V+NYDMPSS++AYVHRIGRTXXXXX   AVTLFTEED+ L+  V++VA+ SGA++P+W +KL   VR+D V+R+EKRPP RK++G
Sbjct:  285 LKKQKKIVIDGGAYGGSAAVGGVAARIEQKFMFVGGRGEQGKVMAVRGLLKEGLRAPILLFVQTKDRAAELYRELVYDGVKVEAIHADRSQQARMRAVERFRTGEVWVLIATDVLARGLDFLAVESVVNYDMPSSASAYVHRIGRTXXXXXXXTAVTLFTEEDRVLLGPVLKVAKVSGADVPEWALKLKG-VRKDVVRRMEKRPPTRKRIG 494          
BLAST of Gcaud8069.t1 vs. uniprot
Match: A0A7S3A9B4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A9B4_9RHOD)

HSP 1 Score: 212 bits (540), Expect = 1.020e-61
Identity = 115/213 (53.99%), Postives = 156/213 (73.24%), Query Frame = 0
Query:    1 MKDVKRVTVGASGYGGSFAVDEAVSHIDQRFVFVGGQGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELVYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQTVINYDMPSSSAAYVHRIGRTXXXXXSGNAVTLFTEEDKKLVAGVVRVARASGANLPDWL--VKLGARVRRDEVKRLEKRPPKRKQVG 211
            MK   ++ VG   YGG  A  +A S + QRF+F  GQGE GKV A R L+ +G+ PP LVFVQ+++RA+ LF+ELV+DGV++DAIHA+RTAA R++AV  FR+G++W+LIATD++ARG+DF  + TV+NYD+P+S  AYVHRIGR XXXXX   A+T FTE+DK L+  +V VA ASGA +P W+  +K G RV+       EKR P+R ++G
Sbjct:  304 MKTPVKIIVGGQSYGGGTAAVDA-STVKQRFMFADGQGEAGKVAAFRRLLTEGLMPPTLVFVQSQDRASQLFKELVFDGVNIDAIHANRTAAQRSTAVENFRSGRVWILIATDLMARGIDFRTINTVVNYDLPASPIAYVHRIGRXXXXXXXXQAITFFTEDDKPLLRKIVNVAVASGAEVPKWMLDIKPGERVK---ASLQEKRQPRRDRIG 512          
BLAST of Gcaud8069.t1 vs. uniprot
Match: A0A250XAM3_9CHLO (RNA helicase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XAM3_9CHLO)

HSP 1 Score: 194 bits (494), Expect = 3.760e-55
Identity = 101/200 (50.50%), Postives = 139/200 (69.50%), Query Frame = 0
Query:    6 RVTVGASGYGGSFAVDEAVSHIDQRFVFVGGQGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELVYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQTVINYDMPSSSAAYVHRIGRTXXXXXSGNAVTLFTEEDKKLVAGVVRVARASGANLPDWLVKLGARVRRDEVKRLEKRPP 205
            RVTVG          + A S ++QR +FVG   E GK+MA+R LI++G+KPP LVFV +K+RA  L REL+YDGVHVD+IH++++AAARA+AV  FR G+ W+LIATD++ RG+DF+ V+TV+NYD P S+A Y+HRIGRT      G AVT FTEED   +  V  + R +G  +PDW+V++    +RD  K+  + PP
Sbjct:  327 RVTVGVR--------NSAASSVNQRLLFVGR--EAGKLMALRQLIKEGVKPPTLVFVGSKDRAKSLHRELMYDGVHVDSIHSEQSAAARAAAVDNFRLGRTWILIATDLIGRGMDFVGVKTVVNYDFPHSTADYIHRIGRTGRADQQGEAVTFFTEEDSGQLRSVANLVREAGGEVPDWMVQM----KRDRDKKRHRLPP 512          
BLAST of Gcaud8069.t1 vs. uniprot
Match: A7SFZ1_NEMVE (RNA helicase (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SFZ1_NEMVE)

HSP 1 Score: 191 bits (484), Expect = 2.660e-54
Identity = 104/205 (50.73%), Postives = 144/205 (70.24%), Query Frame = 0
Query:    6 RVTVGASGYGGSFAVDEAVSHIDQRFVFVGGQGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELVYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQTVINYDMPSSSAAYVHRIGRTXXXXXSGNAVTLFTEEDKKLVAGVVRVARASGANLPDWLVKLGARVRRDEVKRLEKRPPKRKQV 210
            RVTVG          + A + +DQ  +FVG   E GK++AVR++++ G  PPVL+FVQ+K+RA +LF EL+YDG++VD IH+DRT A R + V  FR GKIWVLIAT+++ RG+DF  V  VINYD P+S+ AY+HRIGRTXXXXX   A+T FTEED   +  +  V ++SG ++PDW++K+    RR++ K+LEK P KR  +
Sbjct:  255 RVTVGIR--------NSATATVDQELLFVGQ--ESGKLLAVRDIVQKGFTPPVLIFVQSKDRAKELFHELIYDGINVDVIHSDRTQAQRDNIVKSFRTGKIWVLIATELMGRGIDFKGVNLVINYDFPTSAVAYIHRIGRTXXXXXXXKAITFFTEEDTTSLRSIANVIKSSGCDVPDWMLKIKKASRREK-KKLEKAPVKRAAI 448          
BLAST of Gcaud8069.t1 vs. uniprot
Match: UPI0013901701 (probable ATP-dependent RNA helicase DDX52 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901701)

HSP 1 Score: 191 bits (484), Expect = 2.640e-53
Identity = 104/205 (50.73%), Postives = 144/205 (70.24%), Query Frame = 0
Query:    6 RVTVGASGYGGSFAVDEAVSHIDQRFVFVGGQGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELVYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQTVINYDMPSSSAAYVHRIGRTXXXXXSGNAVTLFTEEDKKLVAGVVRVARASGANLPDWLVKLGARVRRDEVKRLEKRPPKRKQV 210
            RVTVG          + A + +DQ  +FVG   E GK++AVR++++ G  PPVL+FVQ+K+RA +LF EL+YDG++VD IH+DRT A R + V  FR GKIWVLIAT+++ RG+DF  V  VINYD P+S+ AY+HRIGRTXXXXX   A+T FTEED   +  +  V ++SG ++PDW++K+    RR++ K+LEK P KR  +
Sbjct:  370 RVTVGIR--------NSATATVDQELLFVGQ--ESGKLLAVRDIVQKGFTPPVLIFVQSKDRAKELFHELIYDGINVDVIHSDRTQAQRDNIVKSFRTGKIWVLIATELMGRGIDFKGVNLVINYDFPTSAVAYIHRIGRTXXXXXXXKAITFFTEEDTTSLRSIANVIKSSGCDVPDWMLKIKKASRREK-KKLEKAPVKRAAI 563          
BLAST of Gcaud8069.t1 vs. uniprot
Match: A0A6S8LCF8_DUNTE (RNA helicase n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A6S8LCF8_DUNTE)

HSP 1 Score: 187 bits (475), Expect = 2.460e-52
Identity = 94/183 (51.37%), Postives = 131/183 (71.58%), Query Frame = 0
Query:    6 RVTVGASGYGGSFAVDEAVSHIDQRFVFVGGQGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELVYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQTVINYDMPSSSAAYVHRIGRTXXXXXSGNAVTLFTEEDKKLVAGVVRVARASGANLPDWLVKL 188
            RVTVGA         + AV+ +DQR +FVG   E GK++A+R L+ +G+KPPVLVFV TK+RA  L +EL+YDGV  D++ A ++ AAR +AV  FR+G+ WVL++TD++ RG+DF+ V TVINYDMP+++  Y+HRIGRT     +G AVT FTEEDK ++  V  + R SG N+PDW+ K+
Sbjct:  320 RVTVGAR--------NTAVNTVDQRLLFVGR--ENGKLLALRQLLTEGLKPPVLVFVATKDRARALHKELMYDGVRADSLSASQSMAARTAAVDNFRSGRTWVLVSTDLIGRGMDFIGVNTVINYDMPATTTDYIHRIGRTGRAGHTGTAVTFFTEEDKPVLRPVANLIRESGGNVPDWMTKM 492          
BLAST of Gcaud8069.t1 vs. uniprot
Match: A0A507CMM3_9FUNG (RNA helicase n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CMM3_9FUNG)

HSP 1 Score: 186 bits (473), Expect = 2.730e-52
Identity = 105/210 (50.00%), Postives = 146/210 (69.52%), Query Frame = 0
Query:    1 MKDVKRVTVGASGYGGSFAVDEAVSHIDQRFVFVGGQGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELVYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQTVINYDMPSSSAAYVHRIGRTXXXXXSGNAVTLFTEEDKKLVAGVVRVARASGANLPDWLVKLGARVRRDEVKRLEKRPPKRKQV 210
            M D  R+ +GAS        + A   I Q  ++VG   E+GK++A+R LI++GIKPPVL+FVQ+ ERA +LF ELVYDG+HVD IHADR+ + R + V  FR G++WVLI T+++ARG+DF+ V  VINYD P +  +Y+HRIGRTXXXXX G AVT FT++D   +  VV V R SG  +P+W+++L  R  + + K L+K P KRK++
Sbjct:  314 MIDPVRIVIGAS--------NAATETIKQSLLYVGS--EEGKMIAIRQLIQEGIKPPVLIFVQSIERARELFHELVYDGIHVDIIHADRSKSQRDAVVDNFRQGRVWVLITTELMARGIDFMGVNLVINYDFPQTVQSYIHRIGRTXXXXXXGEAVTYFTKDDVVYLKSVVNVMRESGCEVPEWMLQL-KRPSKAKRKHLKKFPIKRKEI 512          
BLAST of Gcaud8069.t1 vs. uniprot
Match: A0A397TD01_9GLOM (RNA helicase n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TD01_9GLOM)

HSP 1 Score: 184 bits (468), Expect = 3.270e-52
Identity = 103/210 (49.05%), Postives = 145/210 (69.05%), Query Frame = 0
Query:    1 MKDVKRVTVGASGYGGSFAVDEAVSHIDQRFVFVGGQGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELVYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQTVINYDMPSSSAAYVHRIGRTXXXXXSGNAVTLFTEEDKKLVAGVVRVARASGANLPDWLVKLGARVRRDEVKRLEKRPPKRKQV 210
            MKD  RV +G          + A   I QR V+VG   E+GK++AVR LI++G KPPVL+FVQ+ ERA +LF EL+YD ++VD IH++RT A R S +  FR GKIWVLIAT+++ARG+DF  V  VINYD P S  +Y+HRIGRTXXXXX+G+AVT +T++D   +  +V V + SG  +PDW+++L     ++  ++L K+P +RK +
Sbjct:  222 MKDPIRVVIGLK--------NAATETIKQRLVYVGQ--EEGKLIAVRQLIQEGFKPPVLIFVQSIERAKELFHELIYDSINVDVIHSERTKAQRDSIILNFRQGKIWVLIATELMARGMDFKGVNLVINYDFPQSVQSYIHRIGRTXXXXXTGDAVTYYTKDDAPYLKSIVNVMKESGCEIPDWMLQL-KNPSKESKQQLRKKPIERKTI 420          
BLAST of Gcaud8069.t1 vs. uniprot
Match: A0A7S0QAU5_9EUKA (RNA helicase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QAU5_9EUKA)

HSP 1 Score: 186 bits (472), Expect = 3.970e-52
Identity = 98/188 (52.13%), Postives = 135/188 (71.81%), Query Frame = 0
Query:   23 AVSHIDQRFVFVGGQGEQGKVMAVRNLIRDGIKPPVLVFVQTKERAADLFRELVYDGVHVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQTVINYDMPSSSAAYVHRIGRTXXXXXSGNAVTLFTEEDKKLVAGVVRVARASGANLPDWLVKLGARVRRDEVKRLEKRPPKRKQV 210
            A   ++Q+ VFVG   E GK++A+R +I+ GI+PPVL+FVQ+KERA +LF +LVYDG+ VD IHADR+ A R   V +FR GK+WVLIAT+++ARG+DF  VQ V+N+D P S+ +Y+HRIG  XXXXX   A+T FTE D + +  +  V +ASG  +PDW++KL A +RRDE +R    P  RK +
Sbjct:  320 AAETVEQKLVFVGR--EDGKMVALRQMIKQGIQPPVLIFVQSKERALELFHQLVYDGLRVDVIHADRSQAQRDEIVDQFRLGKVWVLIATELMARGMDFKGVQLVLNFDFPQSTVSYIHRIGXXXXXXXXXKAITYFTEADVEQLRSIANVLKASGCEVPDWMLKLKASLRRDEKRRRAVAPISRKSI 505          
The following BLAST results are available for this feature:
BLAST of Gcaud8069.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILG7_9FLOR3.790e-9974.41Putative ATP-dependent RNA helicase ddx52 n=1 Tax=... [more]
R7QFR3_CHOCR3.220e-8063.51DEAD (Asp-Glu-Ala-Asp) box polypeptide n=1 Tax=Cho... [more]
A0A7S3A9B4_9RHOD1.020e-6153.99Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A250XAM3_9CHLO3.760e-5550.50RNA helicase n=1 Tax=Chlamydomonas eustigma TaxID=... [more]
A7SFZ1_NEMVE2.660e-5450.73RNA helicase (Fragment) n=1 Tax=Nematostella vecte... [more]
UPI00139017012.640e-5350.73probable ATP-dependent RNA helicase DDX52 n=1 Tax=... [more]
A0A6S8LCF8_DUNTE2.460e-5251.37RNA helicase n=1 Tax=Dunaliella tertiolecta TaxID=... [more]
A0A507CMM3_9FUNG2.730e-5250.00RNA helicase n=1 Tax=Synchytrium endobioticum TaxI... [more]
A0A397TD01_9GLOM3.270e-5249.05RNA helicase n=1 Tax=Glomus cerebriforme TaxID=658... [more]
A0A7S0QAU5_9EUKA3.970e-5252.13RNA helicase (Fragment) n=1 Tax=Coccolithus braaru... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 66..150
e-value: 5.1E-29
score: 112.4
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 46..150
e-value: 1.5E-26
score: 92.9
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 48..189
score: 20.965668
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 17..191
e-value: 1.7E-48
score: 166.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 25..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..256
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..256
NoneNo IPR availablePANTHERPTHR24031:SF594ATP-DEPENDENT RNA HELICASE DDX52-RELATEDcoord: 21..208
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 21..208
NoneNo IPR availableCDDcd18787SF2_C_DEADcoord: 27..159
e-value: 1.00121E-40
score: 134.942

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5515_length_1547_cov_3.331044contigNODE_5515_length_1547_cov_3.331044:4..774 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8069.t1Gcaud8069.t1Gracilaria caudata M_176_S67 malemRNANODE_5515_length_1547_cov_3.331044 4..774 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8069.t1 ID=Gcaud8069.t1|Name=Gcaud8069.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=257bp
MKDVKRVTVGASGYGGSFAVDEAVSHIDQRFVFVGGQGEQGKVMAVRNLI
RDGIKPPVLVFVQTKERAADLFRELVYDGVHVDAIHADRTAAARASAVAR
FRAGKIWVLIATDVLARGLDFLAVQTVINYDMPSSSAAYVHRIGRTGRNG
KSGNAVTLFTEEDKKLVAGVVRVARASGANLPDWLVKLGARVRRDEVKRL
EKRPPKRKQVGGPNRASVNGARRASKKQRKALQRKAAQPEEVDDSAEHSD
GSSRDL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase