Gcaud8064.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8064.t1
Unique NameGcaud8064.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length301
Homology
BLAST of Gcaud8064.t1 vs. uniprot
Match: A0A2V3J2W8_9FLOR (Sodium/potassium/calcium exchanger 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2W8_9FLOR)

HSP 1 Score: 343 bits (880), Expect = 5.960e-112
Identity = 191/291 (65.64%), Postives = 221/291 (75.95%), Query Frame = 0
Query:    7 RHRSRRRYRARSRKDATPFASLLFLAVIAISAICLRKQRSSPISSTNRTLQVLKLPSESVTAESHSLQQVAAVRSSADYGDLCKSDNIFSNKASLTFLIPGIVLLFVGLAIVTDDCFVPALEVICERLNLSEDVAGATFMAAGSSTPEFFASLLGVFVTEDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKLDWRPLLRDSSFYVASIILLLLFVLPVSNGEIVWWEGLVLVLFYVIYVLFMAFLNKPYMEWAARLGQ-RTLNRSQASDLEAGNADARSANSSVNIMEVE 296
            RH  RRRY +R RK A P+ASLLFL VIA+ A+  R Q+++  +S                    +L  + +VRS ADYG+LC  DN+FS K SL FLIP +V  FVGLAIVTDD FVPALE ICERLNLSEDVAGATFMAAGSSTPEFFASLL VFVT+DEVGIGTIVGSAVFNILVIIGLSAALAGAVIKLDWRPLLRDS+FY+ASIILLLLFV+P++NG+I WWEGL+LVLFY +YVLFMAFLNKPYM+WA +L + R   +S   DLEAG        SS +++  E
Sbjct:    9 RHPRRRRYSSRDRKSALPYASLLFLTVIAVCAVFYRTQQNTHHASAP-----------------DALLDIVSVRSGADYGNLCSGDNVFSKKWSLAFLIPAVVFTFVGLAIVTDDYFVPALECICERLNLSEDVAGATFMAAGSSTPEFFASLLAVFVTKDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKLDWRPLLRDSAFYIASIILLLLFVIPITNGQIDWWEGLILVLFYGVYVLFMAFLNKPYMKWADKLNKKRAAKKSSIGDLEAGTFTTSYPTSSGDVISTE 282          
BLAST of Gcaud8064.t1 vs. uniprot
Match: R7QEG4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEG4_CHOCR)

HSP 1 Score: 274 bits (700), Expect = 4.260e-85
Identity = 161/262 (61.45%), Postives = 194/262 (74.05%), Query Frame = 0
Query:   19 RKDATPFASLLFLAVIAISAICLRKQRSSPISSTNRTLQVLKLPSESVTAESHSLQQVAAVRSSADYGDLCKSDN-IFSNKASLTFLIPGIVLLFVGLAIVTDDCFVPALEVICERLNLSEDVAGATFMAAGSSTPEFFASLLGVFVTEDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKLDWRPLLRDSSFYVASIILLLLFVLPVSNGEIVWWEGLVLVLFYVIYVLFMAFLNKPYMEWAARLGQRTLNRSQASDLEAG 279
            R+D+ P+ASL FL  +   A+          S T+        P++S++ E +SL  + A R+S  YGDLC  D  +F ++ +L FLIPGI++ FVGLAIVTDD FV ALE ICERL+LSEDVAGATFMAAGSSTPEFFAS+L VFVTEDEVGIGTIVGSAVFN+LVIIGLSAALAG+V+ LDWRPL RDS+FY+ SI+LLL FVL  S GEI W+EGL+LV  YV+YVLFMAF NKPYM+WA  L  +    +Q  DLE G
Sbjct:   17 RQDSVPYASLCFLIGLGFCAVWF--------SGTDS-------PNDSLSTE-NSLLGIVAARNSNSYGDLCDPDKGVFGSEYALFFLIPGIIVAFVGLAIVTDDYFVAALERICERLDLSEDVAGATFMAAGSSTPEFFASMLSVFVTEDEVGIGTIVGSAVFNVLVIIGLSAALAGSVLSLDWRPLARDSAFYMMSIVLLLTFVLGSSRGEIKWYEGLILVFGYVLYVLFMAFGNKPYMKWAKNL--KFGKSAQEPDLEKG 260          
BLAST of Gcaud8064.t1 vs. uniprot
Match: A0A1X6NXX6_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NXX6_PORUM)

HSP 1 Score: 218 bits (556), Expect = 4.340e-63
Identity = 117/202 (57.92%), Postives = 147/202 (72.77%), Query Frame = 0
Query:   85 YGDLCK-SDNIFSNKASLTFLIPGIVLLFVGLAIVTDDCFVPALEVICERLNLSEDVAGATFMAAGSSTPEFFASLLGVFVTEDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKLDWRPLLRDSSFYVASIILLLLFVLPVSNGEIVWWEGLVLVLFYVIYVLFMAFLNKPYMEWAARLGQRTLNRSQASDLEAGNADARS 285
            YGDLC+ +D      A+L   +PG++  F+GLAIVTD+ FVPALE IC+ L LS+DVAGATF AAGSS PE F SLL VFVT+DEVG+GTIVGSAVFN+LVIIG+SA LAG+V++LDWRPL+RDS+FY   I +LL+ VL V+ GE  WWEGL+++  Y  Y+LFMAF NKPYM    R    +   + A++ E    D  S
Sbjct:   92 YGDLCEPADTFLKRPAALALYVPGVLFTFLGLAIVTDEYFVPALERICDALRLSDDVAGATFAAAGSSAPELFTSLLAVFVTKDEVGVGTIVGSAVFNVLVIIGVSAMLAGSVLELDWRPLVRDSAFYALFISVLLVQVLGVTKGEADWWEGLIMLGIYACYILFMAFANKPYMRAMERFLSASKKAALAAEREVKTLDVES 293          
BLAST of Gcaud8064.t1 vs. uniprot
Match: A0A1X6P0V3_PORUM (Na_Ca_ex domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0V3_PORUM)

HSP 1 Score: 181 bits (460), Expect = 1.060e-52
Identity = 103/175 (58.86%), Postives = 130/175 (74.29%), Query Frame = 0
Query:  111 LFVGLAIVTDDCFVPALEVICERLNLSEDVAGATFMAAGSSTPEFFASLLGVFVTEDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKLDWRPLLRDSSFYVASIILLLLFVLPVSNGEIVWWEGLVLVLFYVIYVLFMAFLNKPYMEWAARL--GQRTLNRSQAS----DLEAG 279
            LF+GLAIVTDD FV +L+ ICE+L LS+DVAGATF+AAGSS PE F SL+ VFVT+DEVG+GTIVGSAVFN+LVIIG +AALAG+V+ LDWRPL+RDS FY   I LL + ++  S  +  W+EGL+LVL Y  Y+ FM + NKPYM  A +   G+R    ++A     D+E G
Sbjct:    3 LFLGLAIVTDDYFVASLDRICEQLRLSDDVAGATFLAAGSSAPELFTSLISVFVTKDEVGVGTIVGSAVFNVLVIIGSAAALAGSVLHLDWRPLVRDSFFYFVFIALLFMSLVVTSRSDATWYEGLILVLAYGGYIAFMKWGNKPYMRAAQKWSGGRRARAAARAGTPNGDVEGG 177          
BLAST of Gcaud8064.t1 vs. uniprot
Match: S9YBY9_CAMFR (Na_Ca_ex domain-containing protein n=1 Tax=Camelus ferus TaxID=419612 RepID=S9YBY9_CAMFR)

HSP 1 Score: 172 bits (437), Expect = 7.630e-49
Identity = 105/209 (50.24%), Postives = 143/209 (68.42%), Query Frame = 0
Query:   93 NIFSNK----ASLTFLIPGIVLLFVGLAIVTDDCFVPALEVICERLNLSEDVAGATFMAAGSSTPEFFASLLGVFVTEDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKLDWRPLLRDSSFYVASIILLLLFVLPVSNGEIVWWEGLVLVLFYVIYVLFMAFLNKPYMEWAARLGQRTLNRSQA--SDLEAGN--ADARSANSSVNIM 293
            ++FSN+     ++   I G + +F  LAIV DD FVP+LE ICE+L+LSEDVAGATFMAAGSSTPE FAS++GVF+T  +VG+GTIVGSAVFNIL IIG+    AG V++L W  + RDS +Y  S+I+L+ F+    + EIVWWEGLVL++ YV Y+L M +  K  M+    + Q+T+       S+LE GN   D+ S + SV ++
Sbjct:   27 DLFSNQERQHGAVLLHILGALYMFYALAIVCDDFFVPSLEKICEKLHLSEDVAGATFMAAGSSTPELFASVIGVFITHGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVRLTWWAVCRDSVYYTLSVIVLIAFI---YDEEIVWWEGLVLIILYVFYILIMKYNVK--MQAFFTVKQKTIANGNTVNSELEDGNDYCDSSSDDPSVPLL 230          
BLAST of Gcaud8064.t1 vs. uniprot
Match: A0A1A6HLR5_NEOLE (Na_Ca_ex domain-containing protein (Fragment) n=1 Tax=Neotoma lepida TaxID=56216 RepID=A0A1A6HLR5_NEOLE)

HSP 1 Score: 172 bits (436), Expect = 1.440e-47
Identity = 97/192 (50.52%), Postives = 131/192 (68.23%), Query Frame = 0
Query:   93 NIFSNK----ASLTFLIPGIVLLFVGLAIVTDDCFVPALEVICERLNLSEDVAGATFMAAGSSTPEFFASLLGVFVTEDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKLDWRPLLRDSSFYVASIILLLLFVLPVSNGEIVWWEGLVLVLFYVIYVLFMAFLNKPYMEWAARLGQRTLNRSQASDLEAGN 280
            ++FSN+     ++   I G + +F  LAIV DD FVP+LE ICE+L+LSEDVAGATFMAAGSSTPE FAS++GVF+T  +VG+GTIVGSAVFNIL IIG+    AG V++L W  + RDS +Y  S+++L+ F+    + EIVWWEGLVL++ YV Y+L M +  K    +  +          +S+LE GN
Sbjct:   27 DLFSNRERQHGAVLLHILGALYMFYALAIVCDDFFVPSLEKICEKLHLSEDVAGATFMAAGSSTPELFASVIGVFITHGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVRLTWWAVCRDSVYYTLSVVVLIAFI---YDEEIVWWEGLVLIILYVFYILIMKYNMKMQTFFTTKQKSIANGNPVSSELEDGN 215          
BLAST of Gcaud8064.t1 vs. uniprot
Match: A0A7J7F4J8_DICBM (Na_Ca_ex domain-containing protein n=1 Tax=Diceros bicornis minor TaxID=77932 RepID=A0A7J7F4J8_DICBM)

HSP 1 Score: 172 bits (436), Expect = 1.480e-47
Identity = 102/194 (52.58%), Postives = 134/194 (69.07%), Query Frame = 0
Query:   93 NIFSNK----ASLTFLIPGIVLLFVGLAIVTDDCFVPALEVICERLNLSEDVAGATFMAAGSSTPEFFASLLGVFVTEDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKLDWRPLLRDSSFYVASIILLLLFVLPVSNGEIVWWEGLVLVLFYVIYVLFMAFLNKPYMEWAARLGQRTLNRSQA--SDLEAGN 280
            ++FSNK     ++   I G + +F  LAIV DD FVP+LE ICE+L+LSEDVAGATFMAAGSSTPE FAS++GVF+T  +VG+GTIVGSAVFNIL IIG+    AG V+ L W  + RDS +Y  S+I+L+ F+    + EIVWWEGLVL++ YV Y+L M +  K  M+    + Q+T+       S+LE GN
Sbjct:    7 DLFSNKERQHGAVLLHILGALYMFYALAIVCDDFFVPSLEKICEKLHLSEDVAGATFMAAGSSTPELFASVIGVFITHGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVLLTWWAVCRDSVYYTLSVIVLIAFI---YDEEIVWWEGLVLIILYVFYILIMKYNMK--MQAFFTVKQKTIANGNTVNSELEDGN 195          
BLAST of Gcaud8064.t1 vs. uniprot
Match: UPI0005F4C6F1 (sodium/potassium/calcium exchanger 4 isoform X5 n=1 Tax=Cercocebus atys TaxID=9531 RepID=UPI0005F4C6F1)

HSP 1 Score: 175 bits (443), Expect = 3.250e-47
Identity = 102/194 (52.58%), Postives = 137/194 (70.62%), Query Frame = 0
Query:   93 NIFSNK----ASLTFLIPGIVLLFVGLAIVTDDCFVPALEVICERLNLSEDVAGATFMAAGSSTPEFFASLLGVFVTEDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKLDWRPLLRDSSFYVASIILLLLFVLPVSNGEIVWWEGLVLVLFYVIYVLFMAFLNKPYMEWAARLGQRTLNRSQA--SDLEAGN 280
            ++FSNK     ++   I G + +F  LAIV DD FVP+LE ICERL+LSEDVAGATFMAAGSSTPE FAS++GVF+T  +VG+GTIVGSAVFNIL IIG+    AG V++L W  + RDS +Y  S+I+L++F+    + +IVWWEGLVL++ YV Y+L M +  K  M+    + Q+++       S+LEAGN
Sbjct:   88 DLFSNKERQHGAVLLHILGALYMFYALAIVCDDFFVPSLEKICERLHLSEDVAGATFMAAGSSTPELFASVIGVFITHGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVRLTWWAVCRDSVYYTISVIVLIVFI---YDEQIVWWEGLVLIILYVFYILIMKYNVK--MQAFFTIKQKSIANGNPVNSELEAGN 276          
BLAST of Gcaud8064.t1 vs. uniprot
Match: UPI000703FCED (sodium/potassium/calcium exchanger 4 n=1 Tax=Myotis brandtii TaxID=109478 RepID=UPI000703FCED)

HSP 1 Score: 168 bits (425), Expect = 3.570e-47
Identity = 97/192 (50.52%), Postives = 130/192 (67.71%), Query Frame = 0
Query:   93 NIFSNK----ASLTFLIPGIVLLFVGLAIVTDDCFVPALEVICERLNLSEDVAGATFMAAGSSTPEFFASLLGVFVTEDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKLDWRPLLRDSSFYVASIILLLLFVLPVSNGEIVWWEGLVLVLFYVIYVLFMAFLNKPYMEWAARLGQRTLNRSQASDLEAGN 280
            ++FSN      ++   I G + +F  LAIV DD FVP+LE ICE+L+LSEDVAGATFMAAGSSTPE FAS++GVF+T  +VG+GTIVGSAVFNIL IIG+    AG V++L W  + RDS +Y  S+I+L+ F+    + EIVWWEGLVL++ Y  Y+L M +  K    +  +        + +S+LE GN
Sbjct:   46 DLFSNTERQHGAVLLHILGALYMFYALAIVCDDFFVPSLEKICEKLHLSEDVAGATFMAAGSSTPELFASIIGVFITHGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVQLTWWAVCRDSVYYTLSVIVLIAFI---YDEEIVWWEGLVLIILYGFYILIMKYNVKIQAFFTIKQKAIANGNTVSSELEDGN 234          
BLAST of Gcaud8064.t1 vs. uniprot
Match: UPI001D19CA01 (sodium/potassium/calcium exchanger 4 isoform X4 n=1 Tax=Felis catus TaxID=9685 RepID=UPI001D19CA01)

HSP 1 Score: 174 bits (442), Expect = 4.460e-47
Identity = 102/194 (52.58%), Postives = 137/194 (70.62%), Query Frame = 0
Query:   93 NIFSNK----ASLTFLIPGIVLLFVGLAIVTDDCFVPALEVICERLNLSEDVAGATFMAAGSSTPEFFASLLGVFVTEDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKLDWRPLLRDSSFYVASIILLLLFVLPVSNGEIVWWEGLVLVLFYVIYVLFMAFLNKPYMEWAARLGQRTL--NRSQASDLEAGN 280
            ++FSNK     ++   I G + +F  LAIV DD FVP+LE ICE+L+LSEDVAGATFMAAGSSTPE FAS++GVF+T  +VG+GTIVGSAVFNIL IIG+    AG V++L W  + RDS +Y  S+I+L+ F+    + EIVWWEGLVL++ YV Y+L M +  K  M+    + Q+T+    + +S+LE GN
Sbjct:   88 DLFSNKERQHGAVLLHILGALYMFYALAIVCDDFFVPSLEKICEKLHLSEDVAGATFMAAGSSTPELFASVIGVFITHGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVRLTWWAVCRDSVYYTLSVIVLIAFI---YDEEIVWWEGLVLIILYVFYILIMKYNVK--MQAFFTIKQKTIANGNTVSSELEDGN 276          
The following BLAST results are available for this feature:
BLAST of Gcaud8064.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J2W8_9FLOR5.960e-11265.64Sodium/potassium/calcium exchanger 4 n=1 Tax=Graci... [more]
R7QEG4_CHOCR4.260e-8561.45Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NXX6_PORUM4.340e-6357.92Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6P0V3_PORUM1.060e-5258.86Na_Ca_ex domain-containing protein n=1 Tax=Porphyr... [more]
S9YBY9_CAMFR7.630e-4950.24Na_Ca_ex domain-containing protein n=1 Tax=Camelus... [more]
A0A1A6HLR5_NEOLE1.440e-4750.52Na_Ca_ex domain-containing protein (Fragment) n=1 ... [more]
A0A7J7F4J8_DICBM1.480e-4752.58Na_Ca_ex domain-containing protein n=1 Tax=Diceros... [more]
UPI0005F4C6F13.250e-4752.58sodium/potassium/calcium exchanger 4 isoform X5 n=... [more]
UPI000703FCED3.570e-4750.52sodium/potassium/calcium exchanger 4 n=1 Tax=Myoti... [more]
UPI001D19CA014.460e-4752.58sodium/potassium/calcium exchanger 4 isoform X4 n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044880NCX, central ion-binding domain superfamilyGENE3D1.20.1420.30coord: 136..267
e-value: 4.7E-29
score: 103.4
IPR004837Sodium/calcium exchanger membrane regionPFAMPF01699Na_Ca_excoord: 107..249
e-value: 1.5E-27
score: 96.4
IPR004481Sodium/potassium/calcium exchangerPANTHERPTHR10846SODIUM/POTASSIUM/CALCIUM EXCHANGERcoord: 97..274
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 99..118
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 22..41
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..21
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 42..98
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 198..208
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 209..226
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 227..231
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 119..168
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 253..300
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 232..252
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 169..197
NoneNo IPR availableTMHMMTMhelixcoord: 99..118
NoneNo IPR availableTMHMMTMhelixcoord: 174..196
NoneNo IPR availableTMHMMTMhelixcoord: 22..41
NoneNo IPR availableTMHMMTMhelixcoord: 230..252
NoneNo IPR availableTMHMMTMhelixcoord: 208..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3950_length_2753_cov_9.028926contigNODE_3950_length_2753_cov_9.028926:1203..2356 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8064.t1Gcaud8064.t1Gracilaria caudata M_176_S67 malemRNANODE_3950_length_2753_cov_9.028926 1203..2356 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8064.t1 ID=Gcaud8064.t1|Name=Gcaud8064.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=301bp
MSVPTLRHRSRRRYRARSRKDATPFASLLFLAVIAISAICLRKQRSSPIS
STNRTLQVLKLPSESVTAESHSLQQVAAVRSSADYGDLCKSDNIFSNKAS
LTFLIPGIVLLFVGLAIVTDDCFVPALEVICERLNLSEDVAGATFMAAGS
STPEFFASLLGVFVTEDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKLD
WRPLLRDSSFYVASIILLLLFVLPVSNGEIVWWEGLVLVLFYVIYVLFMA
FLNKPYMEWAARLGQRTLNRSQASDLEAGNADARSANSSVNIMEVEQRCN
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR044880NCX_ion-bd_dom_sf
IPR004837NaCa_Exmemb
IPR004481K/Na/Ca-exchanger