Gcaud8043.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8043.t1
Unique NameGcaud8043.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length140
Homology
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BLAST of Gcaud8043.t1 vs. uniprot
Match: A0A2V3J6K5_9FLOR (MDS1 and EVI1 complex locus protein EVI1-A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6K5_9FLOR)

HSP 1 Score: 77.4 bits (189), Expect = 7.020e-15
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0 
Query:    2 LAKYTCGTGNCAAQFDSLGALHNHERKAHRKPTTHQCNVCHAT 44
            L ++TCG   CAAQFDS+ ALHNHERK HRKPT HQCNVC+AT
Sbjct:   58 LTRFTCGVDGCAAQFDSVPALHNHERKVHRKPTVHQCNVCNAT 100
The following BLAST results are available for this feature:
BLAST of Gcaud8043.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J6K5_9FLOR7.020e-1574.42MDS1 and EVI1 complex locus protein EVI1-A n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 65..88
e-value: 0.01
score: 25.1
coord: 5..30
e-value: 1.5
score: 17.8
coord: 94..117
e-value: 0.039
score: 23.1
coord: 36..59
e-value: 0.01
score: 25.1
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 36..59
e-value: 0.0025
score: 18.2
coord: 66..88
e-value: 3.8E-4
score: 20.7
coord: 94..117
e-value: 0.0062
score: 16.9
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 67..88
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 96..117
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 7..30
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 38..59
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 65..93
score: 11.613913
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 5..35
score: 9.11994
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 94..117
score: 9.597952
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 36..64
score: 11.239817
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 63..119
e-value: 7.9E-13
score: 50.2
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 3..62
e-value: 1.4E-7
score: 33.5
NoneNo IPR availablePANTHERPTHR24379:SF67BLOODY FINGERS-RELATEDcoord: 10..118
NoneNo IPR availablePANTHERPTHR24379KRAB AND ZINC FINGER DOMAIN-CONTAININGcoord: 10..118
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 92..118
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 5..56
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 44..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1800_length_8346_cov_3.892065contigNODE_1800_length_8346_cov_3.892065:1594..2091 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8043.t1Gcaud8043.t1Gracilaria caudata M_176_S67 malemRNANODE_1800_length_8346_cov_3.892065 1594..2091 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8043.t1 ID=Gcaud8043.t1|Name=Gcaud8043.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=140bp
LLAKYTCGTGNCAAQFDSLGALHNHERKAHRKPTTHQCNVCHATFSNNAN
KNKHIRAVHEGRKKAKCDQCNIHFPYRDGLQRHIRMVHQQRRPYACTYCQ
LQFKTKSHLTKHCMTIHKHLYREVPVSRHARRSSTLQNT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf