Gcaud8011.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8011.t1
Unique NameGcaud8011.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length236
Homology
BLAST of Gcaud8011.t1 vs. uniprot
Match: A0A2V3ILA7_9FLOR (Vesicle transport v-SNARE 13 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILA7_9FLOR)

HSP 1 Score: 261 bits (668), Expect = 3.370e-85
Identity = 149/232 (64.22%), Postives = 178/232 (76.72%), Query Frame = 0
Query:    1 MSFAQPKLPPLDSSFSDYHREFYASLTAANAAIHAAADAQCATPPSQSLLQADAALSDAADLLKTLELEAQSHALQTRNKLRPYVTESRNALSDAHKALRAARIAASQQQTLHHRERLFDGAAGGDDVRIQLAANTDHIEKSNEMISDSRRHIAETELIGASILEDLQSQRTTISRARDHLGNMSTGLQQSDGILNTMHRRAMANRIMVYVILAIIAICCVAVMYVRIFHSR 232
            MSF Q  LPPLDS+FSDYHREFYA+L  +  AI A+A+ Q     SQ L  AD  +++AADL KTLE+E+QS  L TRNKLRPYVTE R ALSDA KALRAAR+A SQ++ L +R+ L      G DVRI ++  T  IEKSNE+I+DSRRHIAETEL+GASILEDL SQR TISRAR ++GNMSTGL QSD ILNTM RRA+ NRI+VY++L  I I C+AV+YVR+FHS 
Sbjct:    1 MSFKQTALPPLDSTFSDYHREFYAALNKSQQAIQASAN-QDLNQVSQCLNDADQHITEAADLFKTLEMESQSQDLTTRNKLRPYVTEGRTALSDARKALRAARVATSQRRDLVNRDELLQR---GGDVRIDMSDTTAQIEKSNEVITDSRRHIAETELVGASILEDLLSQRNTISRARQNVGNMSTGLDQSDTILNTMQRRALVNRILVYIVLVAIGISCLAVIYVRMFHSN 228          
BLAST of Gcaud8011.t1 vs. uniprot
Match: R7QM93_CHOCR (Putative Vesicle transport v-SNARE n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM93_CHOCR)

HSP 1 Score: 184 bits (466), Expect = 1.670e-54
Identity = 110/240 (45.83%), Postives = 167/240 (69.58%), Query Frame = 0
Query:    1 MSFAQPK-----LPPLDSSFSDYHREFYASLTAANAAIHAAADAQCATPP--SQSLLQADAALSDAADLLKTLELEAQSHALQTRNKLRPYVTESRNALSDAHKALRAARIAASQQQTLHHRERLFDGAAGGD-DVRIQLAANTDHIEKSNEMISDSRRHIAETELIGASILEDLQSQRTTISRARDHLGNMSTGLQQSDGILNTMHRRAMANRIMVYVILAIIAICCVAVMYVRIFHSR 232
            MSFA+P+     L P  S FSDYH+EF + L ++  +I  A     ++P   + +L +AD  + +A+DLLK++ELEAQ+    +R  LR +V ++R+ +S   + LRAARIA +Q++   +R+ L  G +  D + R ++   T+ +EK +E+I+ SRR+IAETE IGASILEDLQ+QR TI RAR +LG +  GL+QS  I++TM RRA+ N+I+VY+ILAIIA+ CVA+++VR+FH++
Sbjct:    1 MSFAKPEATIIDLGPASSVFSDYHKEFTSLLASSAESISTAKSVSESSPADSNSALNEADRDIGEASDLLKSMELEAQAAPSDSRISLRSHVAKARDEVSRMRQELRAARIALAQRKEELNRDELLGGYSHSDAEDRSRMTDTTERLEKGSEIITGSRRNIAETEAIGASILEDLQNQRNTIMRARQNLGGVDGGLEQSGSIISTMQRRAIMNKIIVYIILAIIAVACVAIVFVRVFHAK 240          
BLAST of Gcaud8011.t1 vs. uniprot
Match: A0A1X6NU83_PORUM (Uncharacterized protein n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NU83_PORUM)

HSP 1 Score: 89.0 bits (219), Expect = 1.340e-18
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 0
Query:  120 DGA-AGGDDVRIQLAANTDHIEKSNEMISDSRRHIAETELIGASILEDLQSQRTTISRARDHLGNMSTGLQQSDGILNTMHRRAMANRIMVYVILAIIAICCVAVMYVRIFHSRD 233
            DGA  G  D R  L A TD +  S+  I+DSR  +AETE +G  IL DL SQR T+  ARD+L  +  GL QS G+L TM R A+ NR+ +Y +  II +  + ++YVR+F  R 
Sbjct:   35 DGARVGSMDQRAALLATTDILAASSARIADSRARMAETETVGVGILADLASQRRTLGNARDNLTGVDDGLTQSRGLLATMSRTALINRLALYAVGGIIGLVLLFIIYVRLFGGRS 149          
BLAST of Gcaud8011.t1 vs. uniprot
Match: C1E4H4_MICCC (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E4H4_MICCC)

HSP 1 Score: 89.0 bits (219), Expect = 7.290e-18
Identity = 63/192 (32.81%), Postives = 103/192 (53.65%), Query Frame = 0
Query:   47 QSLLQADAALSDAADLLKTLELEAQSHALQTR-----NKLRPYVTESRNALSDAHKALRAARIAASQQQTLHHRERLFDGAAGGDDVRIQLAANTDHIEKSNEMISDSRRHIAETELIGASILEDLQSQRTTISRARDHLGNMSTGLQQSDGILNTMHRRAMANRIMVYVILAIIAICCVAVMYVRIFHSRD 233
            Q + + ++ +++A  L++ ++LEA+S           NKLR Y +E      ++  A RAA  A ++ Q L   E     A      R ++A  T  ++++ + I D +R + ETE +G SIL+DL  QR TI  AR+H+      + +S  IL  M RRAMAN+ M+Y I+A++    + V Y ++F S D
Sbjct:   36 QKIGETESDVAEAEALIRRMDLEARSQQNPAAKNPMLNKLRDYKSELARLKRESQLASRAANEANNRSQLLAGAELDDVSAPTSSSQRDRMAQATQQLDRTGDRIRDGKRTLLETEDLGVSILQDLHRQRETIVSAREHIHGADDNIGRSRKILQAMGRRAMANKAMLYGIIAMLFGAILLVAYFKLFRSSD 227          
BLAST of Gcaud8011.t1 vs. uniprot
Match: C1MQ00_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MQ00_MICPC)

HSP 1 Score: 82.8 bits (203), Expect = 1.510e-15
Identity = 70/218 (32.11%), Postives = 116/218 (53.21%), Query Frame = 0
Query:   15 FSDYHREFY---ASLTAANAAIHAAADAQCATPPSQSLLQADAALSDAADLLKTLELEAQSHALQTRN-----KLRPYVTESRNALSDAHKALRAARIAASQQQTLHHRERLFDGAAGGDDVRIQLAANTDHIEKSNEMISDSRRHIAETELIGASILEDLQSQRTTISRARDHLGNMSTGLQQSDGILNTMHRRAMANRIMVYVILAII--AICCVA 222
            F  Y REF    AS+  A A++ +   A      SQ + + DA +++A  L++ ++LEA+S    T       KLR Y +E +    ++  A RA   + ++ Q L   E    GA      R ++  +T  ++ + + I + ++ + ETE +G SIL+DL  QR TIS AR+++      + +S  IL  M RRA AN++++Y I+A++  AIC VA
Sbjct:    5 FDGYEREFLEYTASINRATASLPSLDGAA----KSQKIAEVDAEVAEAEALVRRMDLEARSLRDPTVKTPMLAKLRDYKSELQRLKRESQVAARAISSSNARSQLLAGAELDDMGAPTSSSQRERMLQSTARLDSTGDRIREGKKSLLETEELGVSILQDLHRQRETISSARENVHGADDNIARSRKILAAMGRRAAANKLLLYGIIAMLFFAICFVA 218          
BLAST of Gcaud8011.t1 vs. uniprot
Match: A0A7S0EUQ6_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EUQ6_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 1.550e-15
Identity = 54/174 (31.03%), Postives = 95/174 (54.60%), Query Frame = 0
Query:   44 PPSQSLLQADAALSD-AADLLKTLELEAQSHALQTRNKLRPYVTESRNALSDAHKALRAARIAASQQQTL--HHRERLFDGAAGGDDVRIQLAANTDHIEKSNEMISDSRRHIAETELIGASILEDLQSQRTTISRARDHLGNMSTGLQQSDGILNTMHRRAMANRIMVYVILA 214
            P  + + +A A L D AADL+K +E+EA+S         +      + +L+   KAL+ A     + + L     E+  + AA  DD R +L   +  +EKS + + ++ R   +TE +GA +++DL  QR T+ R+R  L     GL ++  +L TM RRA+AN+++++ ++A
Sbjct:   47 PERELVAKASAGLVDSAADLVKQMEMEARSQPPSEARVSKAAAKVHQTSLAGLRKALKTAGSRGDRSELLGSSSSEKDIESAAERDDQRDRLILASTKMEKSTDKLREAYRTAMDTETVGAQVMQDLHEQRQTLERSRGRLSKAGAGLARTSRVLKTMGRRALANKLLLWFMIA 220          
BLAST of Gcaud8011.t1 vs. uniprot
Match: A0A8J5MR24_HOMAM (Vesicle transport through interaction with t-SNAREs 1A-like n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5MR24_HOMAM)

HSP 1 Score: 80.1 bits (196), Expect = 1.200e-14
Identity = 58/178 (32.58%), Postives = 91/178 (51.12%), Query Frame = 0
Query:   56 LSDAADLLKTLELEAQSHALQTRNKL----RPYVTESRNALSDAHKALRAARIAASQQQTLHHRERLFD----GAAGGDDVRIQLAANTDHIEKSNEMISDSRRHIAETELIGASILEDLQSQRTTISRARDHLGNMSTGLQQSDGILNTMHRRAMANRIMVYVILAIIAICCVAVMY 225
            + +A +LL+ ++LE +      R KL    + Y  E +    +       +RI +S       R  L +    G + G++ +  L  NT+ +E+++  I+   +   ETE IGA IL DL SQR TIS AR+ L      L QS  +LNTM RR + NR ++Y +L I+AI  +  +Y
Sbjct:   45 VEEAKELLERMDLEVRDMEPVQREKLGGRLKSYQVELKRLEGEY------SRIKSSMSNEASMRSELLEDCQAGMSVGEEQQQSLLDNTESLERTSTRITQGSKIAVETEHIGAQILNDLYSQRQTISHARERLRETDADLDQSSRVLNTMLRRVLQNRFILYTVLGIVAIVIIFAIY 216          
BLAST of Gcaud8011.t1 vs. uniprot
Match: A0A3B1J5P3_ASTMX (t-SNARE coiled-coil homology domain-containing protein n=20 Tax=Characiphysae TaxID=186628 RepID=A0A3B1J5P3_ASTMX)

HSP 1 Score: 77.8 bits (190), Expect = 7.930e-14
Identity = 55/180 (30.56%), Postives = 90/180 (50.00%), Query Frame = 0
Query:   46 SQSLLQADAALSDAADLLKTLELEAQSHALQTRNKLRPYVTESRNALSDAHKALRAARIAASQQQTLHHRERLFDGAAGGDDVRIQLAANTDHIEKSNEMISDSRRHIAETELIGASILEDLQSQRTTISRARDHLGNMSTGLQQSDGILNTMHRRAMANRIMVYVILAIIAICCVAVMY 225
            +Q +L  D  L +  +LL+ ++LE +   +Q+R      +   +  L    K  + +RIA S +      E L D  +  ++ R  L  NT+ +E+S+  +    +   ETE IG  IL +L S R  I R+RD L      L +S  +L  M RR + NRI+V+++ AII +  V  +Y
Sbjct:   35 TQLVLNVDKQLEEVRELLEQMDLEVREIPVQSRGMYNSRLKSYKQELEKLEKDFKRSRIAYSDEV---RNELLGDDGSSSENQRAHLLDNTEMLERSSRRLEAGYQIAVETEQIGQEILSNLHSDREKIQRSRDRLRETDANLGKSSRVLTGMLRRIIQNRILVFILGAIILLTIVLAIY 211          
BLAST of Gcaud8011.t1 vs. uniprot
Match: UPI001E67393B (vesicle transport through interaction with t-SNAREs homolog 1A-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E67393B)

HSP 1 Score: 77.8 bits (190), Expect = 8.660e-14
Identity = 61/178 (34.27%), Postives = 93/178 (52.25%), Query Frame = 0
Query:   58 DAADLLKTLELEAQSHALQTRNKL----RPYVTESRNALSDAHKALRAARIAASQQQTLHHRERLFDGAAG---GDDVRIQLAANTDHIEKSNEMISDSRRHIAETELIGASILEDLQSQRTTISRARDHLGNMSTGLQQSDGILNTMHRRAMANRIMVYVILAIIAICCVAVMYVRI 228
            +A +LL+ +ELE +      R KL    + Y  E +  L   +  +RA  I  S+  T    E L DG AG   G++ R  L  N++ +E++   +S   +   ETE IGA IL DL SQR TIS AR+ L      L QS  +LNTM R+ + NR ++Y +  ++ +  V  +Y+ +
Sbjct:   47 EARELLERMELEVRDLEPVQREKLAGRIKSYQVELKR-LEGEYSRVRA--ITTSEGST--RAELLEDGYAGVSVGEEQRQALLDNSETLERATVRLSQGHKIALETEHIGAQILNDLYSQRQTISHARERLRETDVDLDQSSRVLNTMLRQVLQNRFILYAVFIVVGVVIVFAIYLAV 219          
BLAST of Gcaud8011.t1 vs. uniprot
Match: A0A672ZRP2_9TELE (t-SNARE coiled-coil homology domain-containing protein n=14 Tax=Percomorphaceae TaxID=1489872 RepID=A0A672ZRP2_9TELE)

HSP 1 Score: 77.4 bits (189), Expect = 1.100e-13
Identity = 55/180 (30.56%), Postives = 90/180 (50.00%), Query Frame = 0
Query:   46 SQSLLQADAALSDAADLLKTLELEAQSHALQTRNKLRPYVTESRNALSDAHKALRAARIAASQQQTLHHRERLFDGAAGGDDVRIQLAANTDHIEKSNEMISDSRRHIAETELIGASILEDLQSQRTTISRARDHLGNMSTGLQQSDGILNTMHRRAMANRIMVYVILAIIAICCVAVMY 225
            +Q +L  D  L +  +LL+ ++LE +   +Q+R      +   +  +    K  + +RIA S +      E L D A   ++ R  L  NT+ +E+S+  +    +   ETE +G  IL +L S R  I RAR+ L      L +S  IL  M RR + NRI+V+V+ AII +  +  +Y
Sbjct:   35 TQLVLNVDKQLEEVRELLEQMDLEVREIPVQSRAMYNSRLKSYKQEMEKLEKDFKRSRIAYSDEV---RNELLGDDAGSSENQRAHLLDNTEKLERSSRRLEAGYQIAVETEQVGQEILANLHSDREKIQRARERLRETDANLGKSSRILTGMLRRIIQNRILVFVLGAIIVLTIILAIY 211          
The following BLAST results are available for this feature:
BLAST of Gcaud8011.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILA7_9FLOR3.370e-8564.22Vesicle transport v-SNARE 13 n=1 Tax=Gracilariopsi... [more]
R7QM93_CHOCR1.670e-5445.83Putative Vesicle transport v-SNARE n=1 Tax=Chondru... [more]
A0A1X6NU83_PORUM1.340e-1845.22Uncharacterized protein n=2 Tax=Porphyra umbilical... [more]
C1E4H4_MICCC7.290e-1832.81t-SNARE coiled-coil homology domain-containing pro... [more]
C1MQ00_MICPC1.510e-1532.11Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S0EUQ6_9EUKA1.550e-1531.03Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A8J5MR24_HOMAM1.200e-1432.58Vesicle transport through interaction with t-SNARE... [more]
A0A3B1J5P3_ASTMX7.930e-1430.56t-SNARE coiled-coil homology domain-containing pro... [more]
UPI001E67393B8.660e-1434.27vesicle transport through interaction with t-SNARE... [more]
A0A672ZRP2_9TELE1.100e-1330.56t-SNARE coiled-coil homology domain-containing pro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 131..198
e-value: 0.0037
score: 26.5
NoneNo IPR availablePFAMPF12352V-SNARE_Ccoord: 137..201
e-value: 2.7E-15
score: 56.4
NoneNo IPR availableGENE3D1.20.5.110coord: 127..206
e-value: 5.0E-19
score: 70.3
NoneNo IPR availablePANTHERPTHR21230:SF26VESICLE TRANSPORT V-SNARE 13coord: 14..226
NoneNo IPR availablePANTHERPTHR21230VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATEDcoord: 14..226
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 207..228
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..206
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 229..235
NoneNo IPR availableCDDcd15862SNARE_Vti1coord: 136..197
e-value: 4.02367E-15
score: 65.628
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 139..198
NoneNo IPR availableTMHMMTMhelixcoord: 207..229
IPR038407Vesicle transport v-SNARE, N-terminal domain superfamilyGENE3D1.20.58.400coord: 12..111
e-value: 4.7E-10
score: 41.5
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 17..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_831_length_17362_cov_4.155231contigNODE_831_length_17362_cov_4.155231:13801..14508 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8011.t1Gcaud8011.t1Gracilaria caudata M_176_S67 malemRNANODE_831_length_17362_cov_4.155231 13801..14508 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8011.t1 ID=Gcaud8011.t1|Name=Gcaud8011.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
MSFAQPKLPPLDSSFSDYHREFYASLTAANAAIHAAADAQCATPPSQSLL
QADAALSDAADLLKTLELEAQSHALQTRNKLRPYVTESRNALSDAHKALR
AARIAASQQQTLHHRERLFDGAAGGDDVRIQLAANTDHIEKSNEMISDSR
RHIAETELIGASILEDLQSQRTTISRARDHLGNMSTGLQQSDGILNTMHR
RAMANRIMVYVILAIIAICCVAVMYVRIFHSRDRH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR038407v-SNARE_N_sf
IPR010989SNARE