Gcaud8010.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8010.t1
Unique NameGcaud8010.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length260
Homology
BLAST of Gcaud8010.t1 vs. uniprot
Match: A0A2V3IL73_9FLOR (Exosome complex component RRP41 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL73_9FLOR)

HSP 1 Score: 454 bits (1168), Expect = 1.740e-160
Identity = 228/259 (88.03%), Postives = 244/259 (94.21%), Query Frame = 0
Query:    1 MAPAVKRGRGGGAGGLEYISLDGLRVDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPREPTGRDFEPDKAIVKCEFSTAMFASSARRRTWKGDRKSTAAALLLQRLFEGVILLTEYARCEIDIYVQVLQNDGGSVVAAVNAACLALINAGVAMSDFVVACSVGYVQNTFVADPNGLESAADRPELIVAVTPHSGKICSCQLVSKLADNTSFDSAMQYARAGAKQIFEVLEYEVKKYSVGLLDSRGMVAL 259
            MAP  KRGRGGGA GLEYISLDGLRVDGRL  EVRKIRC+LG LSRADGSAYYEQGNTRVLAAVYGPREPTGRDFE DKAIVKCEFSTAMFAS+ARRRTWKGDRKSTAAA+++QRLFEGVILL EY RC+IDIYVQVLQNDGG++VAAVNAACLALINAGVAMSD+VVACSVGYV NTFVADPN LES +DRPEL +A+TPHSGKICSCQLVSKLAD+ SF+SAMQYA AGAKQIF+VLEYEVKKYS+GLLDSRGMVAL
Sbjct:    1 MAPPPKRGRGGGARGLEYISLDGLRVDGRLHTEVRKIRCSLGTLSRADGSAYYEQGNTRVLAAVYGPREPTGRDFEHDKAIVKCEFSTAMFASTARRRTWKGDRKSTAAAIVVQRLFEGVILLAEYPRCQIDIYVQVLQNDGGTLVAAVNAACLALINAGVAMSDYVVACSVGYVDNTFVADPNSLESGSDRPELTLAITPHSGKICSCQLVSKLADDASFESAMQYATAGAKQIFQVLEYEVKKYSLGLLDSRGMVAL 259          
BLAST of Gcaud8010.t1 vs. uniprot
Match: R7Q565_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q565_CHOCR)

HSP 1 Score: 380 bits (975), Expect = 4.790e-131
Identity = 194/262 (74.05%), Postives = 222/262 (84.73%), Query Frame = 0
Query:    1 MAPAVKRGR--GGGAGGLEYISLDGLRVDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPREPTGR-DFEPDKAIVKCEFSTAMFASSARRRTWKGDRKSTAAALLLQRLFEGVILLTEYARCEIDIYVQVLQNDGGSVVAAVNAACLALINAGVAMSDFVVACSVGYVQNTFVADPNGLESAADRPELIVAVTPHSGKICSCQLVSKLADNTSFDSAMQYARAGAKQIFEVLEYEVKKYSVGLLDSRGMVAL 259
            M PA KR R  GGGAGGLEYISLDGLR+DGR P EVRKIRC+LGALSRADGSAYYEQGNTRVL AVYGPREP  R   + D+A+VKCEFSTAMFAS   RRTWKGDRKSTAAAL++Q+ FEGVIL   Y + +IDIYVQVLQNDGG++VAA+NAA LAL+NAGVAMSDFVVACSVG+V +TFV DP+ LESA+DRPEL +AV  HS KI SCQL SKL D  SF+ A+++A +GA QIF+VLEYEV+KYS+ LLDSRG+VAL
Sbjct:    1 MPPATKRSRSRGGGAGGLEYISLDGLRIDGRRPTEVRKIRCSLGALSRADGSAYYEQGNTRVLVAVYGPREPHSRASIQHDRAVVKCEFSTAMFASPVYRRTWKGDRKSTAAALVMQKAFEGVILTASYPKSQIDIYVQVLQNDGGALVAAINAASLALVNAGVAMSDFVVACSVGFVDDTFVVDPSSLESASDRPELTLAVLSHSAKIASCQLDSKLPDGESFERALEFATSGANQIFKVLEYEVRKYSLNLLDSRGLVAL 262          
BLAST of Gcaud8010.t1 vs. uniprot
Match: A0A7S1G3R3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G3R3_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.390e-71
Identity = 118/243 (48.56%), Postives = 172/243 (70.78%), Query Frame = 0
Query:   16 LEYISLDGLRVDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPREPTGR-DFEPDKAIVKCEFSTAMFASSARRRTWKGDRKSTAAALLLQRLFEGVILLTEYARCEIDIYVQVLQNDGGSVVAAVNAACLALINAGVAMSDFVVACSVGYVQNTFVADPNGLESAADRPELIVAVTPHSGKICSCQLVSKLADNTSFDSAMQYARAGAKQIFEVLEYEVKKYSVGLLDSRGMV 257
            +E++SL GLRVDGR P EVRK+RC +G   RADGSAY EQGNT+ +A VYGP++ T R D   D+A V CEFSTA FA S R++    DR++  A+L+L++ FEGVI    Y R +IDI+VQVLQ DGG   AA+N A LALI+AG+AM DFVVAC+ G++ +T + D N +E+    P + VA+ P +GK+ + Q+ S+L  +  F++ ++ A +G + IF+VL+  V+++++  LD+RG++
Sbjct:    4 VEFVSLAGLRVDGRRPAEVRKLRCRMGLFGRADGSAYLEQGNTKAVAVVYGPKQITRRADALHDRASVNCEFSTAPFAGSERKKVRASDRRAAEASLMLKQTFEGVIQRHLYPRSQIDIFVQVLQADGGERAAAINVATLALIDAGIAMDDFVVACTAGFLDDTALLDLNSVETGPGGPRVEVAMVPQTGKLTAVQMESRLPVD-HFEAVLELALSGCRHIFDVLQAAVREHTLKRLDTRGVL 245          
BLAST of Gcaud8010.t1 vs. uniprot
Match: D2VEP3_NAEGR (Predicted protein n=2 Tax=Naegleria TaxID=5761 RepID=D2VEP3_NAEGR)

HSP 1 Score: 222 bits (566), Expect = 3.790e-69
Identity = 113/242 (46.69%), Postives = 171/242 (70.66%), Query Frame = 0
Query:   16 LEYISLDGLRVDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPREPTGRD-FEPDKAIVKCEFSTAMFASSARRRTWKGDRKSTAAALLLQRLFEGVILLTEYARCEIDIYVQVLQNDGGSVVAAVNAACLALINAGVAMSDFVVACSVGYVQNTFVADPNGLESAADRPELIVAVTPHSGKICSCQLVSKLADNTSFDSAMQYARAGAKQIFEVLEYEVKKYSVGLLDSRGM 256
            +EYIS +GLRVDGR  +E+R I+  L   SRADGSAYYEQGNTRVLAAVYGPRE   +   + D+AI+ CE+S A F++  R+R +K DR+ST  ++++++ FE VIL   Y R +IDI++QVLQ DGG+  A +NAA LAL++AG+ M DFVV+C+ G++Q + + D N +E  A  P++ +A+ P   K+   Q+ SKL+ +  F+  +++A  G KQI +V++ ++KK++  L++ RG+
Sbjct:    5 IEYISPEGLRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAIINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPDVPIALLPKHDKVTLLQMDSKLSLD-QFEKVLEHAIEGCKQIHKVIDEQLKKHTYALVNKRGL 245          
BLAST of Gcaud8010.t1 vs. uniprot
Match: R7Q6U6_CHOCR (Exosome component 4-like Rrp41-like (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6U6_CHOCR)

HSP 1 Score: 212 bits (539), Expect = 1.060e-65
Identity = 107/159 (67.30%), Postives = 129/159 (81.13%), Query Frame = 0
Query:   90 MFASSARRRTWKGDRKSTAAALLLQRLFEGVILLTEYARCEIDIYVQVLQNDGGSVVAAVNAACLALINAGVAMSDFVVACSVGYVQNTFVADPNGLESAADRPELIVAVTPHSGKICSCQLVSKLADNTSFDSAMQYARAGAKQIFEVLEYEVKKYSV 248
            MFAS   R TWKGD KSTAAAL++Q+ FEGVIL   Y + +IDIY+QVLQNDGG++VA VNAA LAL+N GVAMSDFVVAC VG+V +TFV DP+ LESA+DRPEL +AV  HS KI SCQL SKL D  SF+ A+++A +GA QIF+VLEYEV+KYS+
Sbjct:    1 MFASPVYRSTWKGDGKSTAAALVMQKAFEGVILTAPYPKSQIDIYLQVLQNDGGALVATVNAASLALVNVGVAMSDFVVACGVGFVDDTFVVDPSSLESASDRPELTLAVLSHSAKIASCQLDSKLPDGESFERALEFATSGANQIFKVLEYEVRKYSL 159          
BLAST of Gcaud8010.t1 vs. uniprot
Match: A0A5D6Y093_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y093_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.440e-65
Identity = 118/253 (46.64%), Postives = 162/253 (64.03%), Query Frame = 0
Query:   12 GAGGLEYISLDGLRVDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPRE---------PTGRDFEPDKAIVKCEFSTAMFASSARRRTWKGDRKSTAAALLLQRLFEGVILLTEYARCEIDIYVQVLQNDGGSVVAAVNAACLALINAGVAMSDFVVACSVGYVQNTFVADPNGLESAADRPELIVAVTPHSGKICSCQLVSKLADNTSFDSAMQYARAGAKQIFEVLEYEVKKYSVGLLDSRG 255
            G GG E+IS+ GLRVDGR   EVR+IR   G   R DGSAYYEQGNT+VLA VYGPRE          +G D    +A+V CEF+ A FA+S R+    G+RK T +AL L+++FE  +    Y R +ID++VQVLQ DGG + A++NA  LALI+AG+A+ DFVVA S GY+Q T + D N  E +A  P+L++A+ P + K+   Q+  KL     F+S M  A  G  Q++E+L+  V++++   L SRG
Sbjct:   12 GGGGGEFISVAGLRVDGRRSEEVRRIRTRFGLFQRVDGSAYYEQGNTKVLAVVYGPRELRAAPGAASSSGSDGGQPRAVVHCEFAQATFATSERKAPRAGERKKTESALALKQIFEACVQTQLYPRSQIDVFVQVLQADGGELPASINAVTLALIDAGIALDDFVVASSAGYLQQTLLCDLNYQEESARAPQLVMALNPRTQKLNLLQMECKLPLEV-FESLMGVAMEGCNQVYELLQTAVREHTWKQLRSRG 263          
BLAST of Gcaud8010.t1 vs. uniprot
Match: A0A8J4PXM0_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PXM0_9MYCE)

HSP 1 Score: 213 bits (541), Expect = 2.070e-65
Identity = 116/245 (47.35%), Postives = 165/245 (67.35%), Query Frame = 0
Query:   16 LEYISLDGLRVDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPRE---PTGRDFEPDKAIVKCEFSTAMFASSARRRTWK---GDRKSTAAALLLQRLFEGVILLTEYARCEIDIYVQVLQNDGGSVVAAVNAACLALINAGVAMSDFVVACSVGYVQNTFVADPNGLESAADRPELIVAVTPHSGKICSCQLVSKLADNTSFDSAMQYARAGAKQIFEVLEYEVKKYSVGLLDSR 254
            L YIS +GLRVDGR PNE+R+I   +  L RADGSAYYEQGNT+++AAVYGPRE    T   F  D+AIV CEFS + F+++ R++ +K   GDR++T A+ L+++ FE  I    Y R +IDIY+QVLQ+DGG   AA+NAA LALI+AGV+M DFV ACS   +    V D N +E  +  P+ ++++ P  G + S  + SK++ +  F+S ++    G ++IF++L  EVKKYS  LL ++
Sbjct:    4 LSYISPEGLRVDGRRPNEIRRINVKMNILGRADGSAYYEQGNTKIIAAVYGPREIVHNTKAMF--DRAIVNCEFSVSSFSTTERKQQFKTSRGDRQTTEASNLIKQAFESTIHTHLYPRSQIDIYIQVLQSDGGLKAAAINAATLALIDAGVSMKDFVCACSTSCIDGIPVLDLNHIEERSGGPDCLLSIQPQLGGVISLNMDSKVSQDL-FESVLELGTQGCQKIFDILSLEVKKYSSELLKNK 245          
BLAST of Gcaud8010.t1 vs. uniprot
Match: V4B1W0_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B1W0_LOTGI)

HSP 1 Score: 210 bits (535), Expect = 1.780e-64
Identity = 110/234 (47.01%), Postives = 159/234 (67.95%), Query Frame = 0
Query:   15 GLEYISLDGLRVDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPREPTGRDFEP--DKAIVKCEFSTAMFASSARRRTWKGDRKSTAAALLLQRLFEGVILLTEYARCEIDIYVQVLQNDGGSVVAAVNAACLALINAGVAMSDFVVACSVGYVQNTFVADPNGLESAADRPELIVAVTPHSGKICSCQLVSKLADNTSFDSAMQYARAGAKQIFEVLEYEVKKY 246
            GLE +S  G R+DGR PNE+RKI+C LG   ++DGSAY EQGNT+VLAAVYGP E  G   +   DK +V C++S A F++  R++  +GDRKST   + L++ F+ VIL + Y R +IDIYV+VLQ+DGG+  A+VNAA LALI+AG+ + D+V ACS G+V +T + D + LE +   PELIVA  P S +I   ++ S+L ++ +    +  A  G K I+E+L+  V+++
Sbjct:    3 GLELLSDQGFRIDGRRPNELRKIQCRLGVFKQSDGSAYIEQGNTKVLAAVYGPHEVRGSRSKMLHDKVLVNCQYSMATFSTGERKKRPRGDRKSTEMTMHLKQTFDAVILTSLYPRSQIDIYVEVLQSDGGNYCASVNAATLALIDAGIPLKDYVCACSAGFVNDTSIVDISYLEESGGGPELIVATLPKSEQIVFLEMNSRLHED-NLSKVLDVASKGCKDIYEILDRAVREH 235          
BLAST of Gcaud8010.t1 vs. uniprot
Match: R7QBW5_CHOCR (Exosome component 4-like Rrp41-like (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBW5_CHOCR)

HSP 1 Score: 209 bits (532), Expect = 1.160e-63
Identity = 107/159 (67.30%), Postives = 127/159 (79.87%), Query Frame = 0
Query:   90 MFASSARRRTWKGDRKSTAAALLLQRLFEGVILLTEYARCEIDIYVQVLQNDGGSVVAAVNAACLALINAGVAMSDFVVACSVGYVQNTFVADPNGLESAADRPELIVAVTPHSGKICSCQLVSKLADNTSFDSAMQYARAGAKQIFEVLEYEVKKYSV 248
            MFAS   R TWKGD KSTAAAL++Q+ FEGVIL   Y + +IDIY QVLQNDGG++VAAVNAA LAL N GVAMSDFVVAC VG+V +TFV DP+ LESA+DRPEL +AV  HS KI SCQL  KL D  SF+ A+++A +GA QIF+VLEYEV+KYS+
Sbjct:    1 MFASPIYRSTWKGDGKSTAAALVMQKAFEGVILTASYPKSQIDIYFQVLQNDGGALVAAVNAASLALANVGVAMSDFVVACGVGFVDDTFVVDPSSLESASDRPELTLAVLSHSAKIASCQLDRKLPDGESFERALEFATSGANQIFKVLEYEVRKYSL 159          
BLAST of Gcaud8010.t1 vs. uniprot
Match: A0A2P6NAE9_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NAE9_9EUKA)

HSP 1 Score: 216 bits (550), Expect = 1.240e-62
Identity = 116/242 (47.93%), Postives = 165/242 (68.18%), Query Frame = 0
Query:   16 LEYISLDGLRVDGRLPNEVRKIRCALGALSRADGSAYYEQGNTRVLAAVYGPREPTGRDFE-PDKAIVKCEFSTAMFASSARRRTWKGDRKSTAAALLLQRLFEGVILLTEYARCEIDIYVQVLQNDGGSVVAAVNAACLALINAGVAMSDFVVACSVGYVQNTFVADPNGLESAADRPELIVAVTPHSGKICSCQLVSKLADNTSFDSAMQYARAGAKQIFEVLEYEVKKYSVGLLDSRGM 256
            LEYIS DGLR+DGR P E+R+IRC L   SRA+GSAY+EQGNT+V+AAVYGPR+   +     D+AI+ CE+S A F++  R++  KGDR+S   +L++++ FE VI+ T + R +IDI+VQVLQ DGG+  A++NAA LALI+AG+ M DFV AC+ G ++ T + D N +E +A  P++ +A+ P +  I   Q+ SKL   T F+  M  A  G K I +VL  EV K++  L+ SR +
Sbjct:  384 LEYISPDGLRLDGRRPEELRRIRCQLAVFSRANGSAYFEQGNTKVIAAVYGPRDVGNKTKALHDRAIINCEYSMATFSTGERKKRSKGDRRSAEISLVIKKTFESVIVTTLFPRSQIDIFVQVLQADGGTRCASINAATLALIDAGIPMKDFVCACAAGCIEGTPLLDLNYIEDSAGGPDVPLALLPQTQTIAMLQMDSKLPIET-FEKVMALAMEGCKAIHKVLSEEVMKHTKHLVVSRAV 624          
The following BLAST results are available for this feature:
BLAST of Gcaud8010.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IL73_9FLOR1.740e-16088.03Exosome complex component RRP41 n=1 Tax=Gracilario... [more]
R7Q565_CHOCR4.790e-13174.05Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1G3R3_9STRA1.390e-7148.56Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
D2VEP3_NAEGR3.790e-6946.69Predicted protein n=2 Tax=Naegleria TaxID=5761 Rep... [more]
R7Q6U6_CHOCR1.060e-6567.30Exosome component 4-like Rrp41-like (Fragment) n=1... [more]
A0A5D6Y093_9STRA1.440e-6546.64Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8J4PXM0_9MYCE2.070e-6547.35Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
V4B1W0_LOTGI1.780e-6447.01Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
R7QBW5_CHOCR1.160e-6367.30Exosome component 4-like Rrp41-like (Fragment) n=1... [more]
A0A2P6NAE9_9EUKA1.240e-6247.93Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 33..161
e-value: 7.4E-33
score: 113.9
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 14..248
e-value: 2.0E-69
score: 235.7
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 166..223
e-value: 1.3E-5
score: 25.1
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 17..247
NoneNo IPR availablePANTHERPTHR11953:SF0EXOSOME COMPLEX COMPONENT RRP41coord: 17..247
NoneNo IPR availableCDDcd11370RNase_PH_RRP41coord: 23..246
e-value: 6.31411E-96
score: 279.043
IPR036345Exoribonuclease, PH domain 2 superfamilySUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 163..247
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 21..187

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_831_length_17362_cov_4.155231contigNODE_831_length_17362_cov_4.155231:12975..13754 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8010.t1Gcaud8010.t1Gracilaria caudata M_176_S67 malemRNANODE_831_length_17362_cov_4.155231 12975..13754 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8010.t1 ID=Gcaud8010.t1|Name=Gcaud8010.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=260bp
MAPAVKRGRGGGAGGLEYISLDGLRVDGRLPNEVRKIRCALGALSRADGS
AYYEQGNTRVLAAVYGPREPTGRDFEPDKAIVKCEFSTAMFASSARRRTW
KGDRKSTAAALLLQRLFEGVILLTEYARCEIDIYVQVLQNDGGSVVAAVN
AACLALINAGVAMSDFVVACSVGYVQNTFVADPNGLESAADRPELIVAVT
PHSGKICSCQLVSKLADNTSFDSAMQYARAGAKQIFEVLEYEVKKYSVGL
LDSRGMVAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom_sf
IPR015847ExoRNase_PH_dom2
IPR036345ExoRNase_PH_dom2_sf
IPR020568Ribosomal_S5_D2-typ_fold