Gcaud7981.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7981.t1
Unique NameGcaud7981.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length469
Homology
BLAST of Gcaud7981.t1 vs. uniprot
Match: A0A1X6NMH9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NMH9_PORUM)

HSP 1 Score: 184 bits (467), Expect = 3.430e-47
Identity = 130/416 (31.25%), Postives = 188/416 (45.19%), Query Frame = 0
Query:    1 MVSLQVLNALLNIGLWFVNAFFAKLLEKVYVHSSKLEFRAKGRTFSMDSGEVSIFQGLKAMMNMIFCNNINPNARYISSAWVCFLILLSLISLPSEIWVETGIDERNNCKPVK-QNTTGVCSSPWGGHSAVGIASASLLVQKSTWIDSDWDIVFEGASVNLSLSDVHRTEVARSILSEAEAEELEANAVARKCNVQVLPCSN---CGTLTVGKDGGTFDTIITNSSIV----DEADHCRETDDDNYCRGDLTYDRETGLVFFFWSVRTERDSGERRVA----------------TTGIEVLLNDEEIHRLLTTNETVWEIFPDSNRSRIYSISCASKGLHWTDLTRAASIFRTVQMERPGEQKRNVNGDIENVKPLTENDILKSVFALKAEDIGSTCKGIVPQYTQCGTFDISKAS 392
            M ++  LNALLN GL    +    L    YV +++    A G T + +S EVS    L+     ++                                 ETG+ E           + GVC+SPWGGHS VG+A+A+LLVQ+  W+D++W  V EGAS  + +++  R             +      V   C V+V  C+    CG+LTV + GG FDT++T +S      DEAD         Y  GD+TYD   G+ F                                   G+EVLL+  E+ RLL      W +     RSR Y+++C + GL   D+ RAA+ +RT+QME+PG  +  V G++  + PL+ +D+ K  FALKAED  STC G V  Y   G F ++ A+
Sbjct:    1 MPTVGTLNALLNGGLMAAASALGALTAHAYVLAARRHLAATGVTGATNSAEVSPTYWLRVAARRLY--------------------------------FETGLHEAPTAAATTVTRSNGVCASPWGGHSDVGVAAAALLVQRLGWLDAEWTAVVEGASKAMDVAE--RFTDGGPHAGGGGDDPAARRYVVADCTVEVGACAGAGGCGSLTVARTGGPFDTVVTGASAAGAATDEADRGPGVP---YGTGDVTYDGAAGVAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVEVLLSPPEVARLLAAAAAPWSLPAAPPRSRAYTLACGTDGLTAADVARAAARYRTMQMEQPGVVRAGVRGELGRLPPLSPSDVAKGAFALKAEDASSTCGGTVAVYRPRGAFALAAAA 379          
BLAST of Gcaud7981.t1 vs. uniprot
Match: A0A1X6NVF2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVF2_PORUM)

HSP 1 Score: 145 bits (365), Expect = 5.600e-34
Identity = 100/383 (26.11%), Postives = 168/383 (43.86%), Query Frame = 0
Query:   70 INPNARYISSAWVCFLILLSLISLPSEIWVETGIDERNNCKPVKQNTT-GVCSSPWGGHSAVGIASASLLVQKSTWIDSDWDIVFEGASVNLSLSDVHRTEVARSILSEAEAEELEANAVARKCNVQVLPCSNCGTLTVGKDGGTFDTIITNSSIVDEADHCRETDDDNYCRGDLTYDRETGLVFFFWSVRTER-------DSGERRVATTGIEVLLNDEEIHRLL------TTNETVWEIFPDSNRSRIYSISCASKGLHWTDLTRAASIFRTVQMERPGEQKRNVNGDIENVKP-LTENDILKSVFALKAEDIGSTCKGIVPQYTQCGTFDISKASILLAVNSFTTILYIVLRIITHK-QKDVPFPTNTGSWKKYATGEQE 436
            +   A+++S+AW+  L    +  +P+E+ +ETG++ R +C P       GVC++PW   + V +++A++L  +  W+D+ W  V EGAS  ++ ++V   +   +      A                           G  G  F  ++  S+                              F FW             D G  R+A  G+EV+L   +  RLL      +T+   + + P +N  R+Y++ CA+ GL   DL  A S++R +Q+  PG        +++ + P LT ++ L++VFALKA+D  STC G VP YT CG  D  KA  L+ V S     ++   +      + V  PT+  +W+  A G  E
Sbjct:  148 VTTRAQHLSAAWIVALTAALVALIPAELLLETGLEARRDCTPSPTTVVDGVCAAPWDNEADVPVSTAAVLTARLDWVDAAWAAVPEGASKRMNPAEVRSADALNAQRDWGGA---------------------------GGGGTAFGNLVLTST------------------------------FLFWEAPAAAARRSAAPDGGRYRIAAGGVEVVLGATDTRRLLAAYRSRSTDPLTFPVTPAAN-GRVYALDCATDGLTGRDLAHALSLYRGMQLGSPGVLTFTPEAEVQALPPPLTIDEALRAVFALKADDFRSTCGGAVPVYTACGAMDWGKAVPLVGVASLLVAAWLAAAVAGGGVPRTVRVPTDAAAWRALAVGXXE 472          
The following BLAST results are available for this feature:
BLAST of Gcaud7981.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1X6NMH9_PORUM3.430e-4731.25Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6NVF2_PORUM5.600e-3426.11Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 27..79
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 80..99
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 391..411
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 100..390
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 412..468

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1299_length_11632_cov_4.409930contigNODE_1299_length_11632_cov_4.409930:8353..9759 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7981.t1Gcaud7981.t1Gracilaria caudata M_176_S67 malemRNANODE_1299_length_11632_cov_4.409930 8353..9759 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7981.t1 ID=Gcaud7981.t1|Name=Gcaud7981.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=469bp
MVSLQVLNALLNIGLWFVNAFFAKLLEKVYVHSSKLEFRAKGRTFSMDSG
EVSIFQGLKAMMNMIFCNNINPNARYISSAWVCFLILLSLISLPSEIWVE
TGIDERNNCKPVKQNTTGVCSSPWGGHSAVGIASASLLVQKSTWIDSDWD
IVFEGASVNLSLSDVHRTEVARSILSEAEAEELEANAVARKCNVQVLPCS
NCGTLTVGKDGGTFDTIITNSSIVDEADHCRETDDDNYCRGDLTYDRETG
LVFFFWSVRTERDSGERRVATTGIEVLLNDEEIHRLLTTNETVWEIFPDS
NRSRIYSISCASKGLHWTDLTRAASIFRTVQMERPGEQKRNVNGDIENVK
PLTENDILKSVFALKAEDIGSTCKGIVPQYTQCGTFDISKASILLAVNSF
TTILYIVLRIITHKQKDVPFPTNTGSWKKYATGEQERSNDFIIAIETESP
NRRLVAIDISKQATDTLS*
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