Gcaud7969.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7969.t1
Unique NameGcaud7969.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length109
Homology
BLAST of Gcaud7969.t1 vs. uniprot
Match: A0A2V3IYT1_9FLOR (LRAT domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYT1_9FLOR)

HSP 1 Score: 140 bits (353), Expect = 2.250e-40
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 0
Query:    9 EEVERRARNSLGTQGYHLLFQNCENFARWCVTGRSSSVQAQGAFIGLLGGLVCRVLGGGVLGCILTAVVTQKAWDNARNGSDTRVGLSGDDSDDD 103
            EE+E+RAR+ LG   YHLLFQNCENFARWCVTGR++S Q+QGAFIGL GG+    LGGG LG +LTA+V  KAWD+ARN SD R G++GDDSD+D
Sbjct:   75 EEIEQRARSCLGRMNYHLLFQNCENFARWCVTGRAASFQSQGAFIGLAGGIASLALGGGFLGAVLTAIVAHKAWDSARNRSDMRPGVAGDDSDED 169          
BLAST of Gcaud7969.t1 vs. uniprot
Match: R7QSB9_CHOCR (LRAT domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSB9_CHOCR)

HSP 1 Score: 90.5 bits (223), Expect = 3.280e-20
Identity = 46/92 (50.00%), Postives = 54/92 (58.70%), Query Frame = 0
Query:   10 EVERRARNSLGTQGYHLLFQNCENFARWCVTGRSSSVQAQGAFIGLLGGLVCRVLGGGVLGCILTAVVTQKAWDNARNGSDTRVGLSGDDSD 101
            +V RRA + LG   YHLLF+NCE+FARWCV G   S Q QG  +G   G+   V GGG+LG  LT VV  K WD   N S  R   +  DSD
Sbjct:  122 DVVRRAESRLGHSRYHLLFENCESFARWCVVGSEVSFQGQGVVMGAAAGVGSLVFGGGLLGAALTFVVVHKFWDRRANTSSGRESAANFDSD 213          
BLAST of Gcaud7969.t1 vs. uniprot
Match: A0A0Q8V8P5_9ACTN (LRAT domain-containing protein n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A0Q8V8P5_9ACTN)

HSP 1 Score: 57.4 bits (137), Expect = 5.660e-8
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 0
Query:    9 EEVERRARNSLGTQGYHLLFQNCENFARWCVTGRSSSVQAQGAFIGLLGGL 59
            EE    A + LGT+GYHL+  NCE+FA WC TGR++S Q +   +G  G L
Sbjct:   66 EETVSNAESRLGTEGYHLVRNNCEHFAAWCCTGRAASTQVRRWALGAQGAL 116          
BLAST of Gcaud7969.t1 vs. uniprot
Match: UPI0009FB9785 (lecithin retinol acyltransferase family protein n=1 Tax=Cupidesulfovibrio termitidis TaxID=42252 RepID=UPI0009FB9785)

HSP 1 Score: 55.8 bits (133), Expect = 1.380e-7
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0
Query:   10 EVERRARNSLGTQGYHLLFQNCENFARWCVTGRSSSVQAQGAFIGLLG 57
            ++  RA   LG   YHLL+ NCE+FA WCVTG+ +S Q     +GLLG
Sbjct:   67 DIVGRAIKRLGEPRYHLLYNNCEHFANWCVTGKHTSKQVALGIVGLLG 114          
BLAST of Gcaud7969.t1 vs. uniprot
Match: A0A6G7XP15_9ACTN (Lecithin retinol acyltransferase family protein n=1 Tax=Nocardioides sp. HDW12B TaxID=2714939 RepID=A0A6G7XP15_9ACTN)

HSP 1 Score: 57.0 bits (136), Expect = 2.770e-7
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 0
Query:   14 RARNSLGTQGYHLLFQNCENFARWCVTGRSSSVQAQGA 51
            RA   LG  GYHL+  NCE+FA WC TGRSSS Q +GA
Sbjct:   73 RAEGRLGETGYHLVINNCEHFATWCCTGRSSSEQVRGA 110          
BLAST of Gcaud7969.t1 vs. uniprot
Match: A0A1B8QD45_9GAMM (LRAT domain-containing protein n=6 Tax=Moraxellaceae TaxID=468 RepID=A0A1B8QD45_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 6.630e-7
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0
Query:    9 EEVERRARNSLGTQGYHLLFQNCENFARWCVTGRSSSVQAQGAFIGLLGGL 59
            +E+ +RA + LG   YHL+  NCE+FA WC+TG + S Q + A + +LGGL
Sbjct:   46 DEIIKRAMSRLGENKYHLITNNCEHFASWCITGIAESQQVKKA-VKILGGL 95          
BLAST of Gcaud7969.t1 vs. uniprot
Match: A0A0A1HQW4_9PSED (Cell wall-associated hydrolases (Invasion-associated proteins) n=1 Tax=Pseudomonas sp. SHC52 TaxID=984195 RepID=A0A0A1HQW4_9PSED)

HSP 1 Score: 53.9 bits (128), Expect = 8.300e-7
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 0
Query:    7 NGEEVERRARNSLGTQGYHLLFQNCENFARWCVTGRSSSVQAQGAF 52
            + EE+  RAR+ LG + Y +LF NCE+F  WCV+G S S Q    F
Sbjct:   77 SSEEIVDRARSRLGEKQYRVLFNNCEHFCSWCVSGNSYSAQVDACF 122          
BLAST of Gcaud7969.t1 vs. uniprot
Match: A0A3M3EBH5_9PSED (LRAT domain-containing protein n=1 Tax=Pseudomonas corrugata TaxID=47879 RepID=A0A3M3EBH5_9PSED)

HSP 1 Score: 54.3 bits (129), Expect = 1.420e-6
Identity = 22/46 (47.83%), Postives = 28/46 (60.87%), Query Frame = 0
Query:    7 NGEEVERRARNSLGTQGYHLLFQNCENFARWCVTGRSSSVQAQGAF 52
            + EE+  RAR+ LG   Y +LF NCE+F  WCV+G S S Q    F
Sbjct:  138 SSEEIAERARSRLGEAQYRVLFNNCEHFCSWCVSGNSYSAQVDACF 183          
BLAST of Gcaud7969.t1 vs. uniprot
Match: A0A127GY74_9GAMM (LRAT domain-containing protein n=1 Tax=Psychrobacter sp. P11G5 TaxID=1699624 RepID=A0A127GY74_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 1.450e-6
Identity = 21/43 (48.84%), Postives = 31/43 (72.09%), Query Frame = 0
Query:    7 NGEEVERRARNSLGTQGYHLLFQNCENFARWCVTGRSSSVQAQ 49
            + EE+ +RA + +G   Y+L+F NCE+FA WCVTG+S S Q +
Sbjct:   72 SSEEIVKRALSRVGEDSYNLVFNNCEHFAAWCVTGKSESKQVK 114          
BLAST of Gcaud7969.t1 vs. uniprot
Match: N8YX35_ACIBZ (LRAT domain-containing protein n=3 Tax=Acinetobacter TaxID=469 RepID=N8YX35_ACIBZ)

HSP 1 Score: 53.9 bits (128), Expect = 2.360e-6
Identity = 24/41 (58.54%), Postives = 27/41 (65.85%), Query Frame = 0
Query:    9 EEVERRARNSLGTQGYHLLFQNCENFARWCVTGRSSSVQAQ 49
            +EV  RA N LG   Y+LLF NCE+FA WCVTG   S Q Q
Sbjct:   74 DEVISRALNCLGEDDYNLLFNNCEHFACWCVTGEKRSEQVQ 114          
The following BLAST results are available for this feature:
BLAST of Gcaud7969.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A2V3IYT1_9FLOR2.250e-4068.42LRAT domain-containing protein n=1 Tax=Gracilariop... [more]
R7QSB9_CHOCR3.280e-2050.00LRAT domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A0Q8V8P5_9ACTN5.660e-849.02LRAT domain-containing protein n=2 Tax=unclassifie... [more]
UPI0009FB97851.380e-750.00lecithin retinol acyltransferase family protein n=... [more]
A0A6G7XP15_9ACTN2.770e-763.16Lecithin retinol acyltransferase family protein n=... [more]
A0A1B8QD45_9GAMM6.630e-747.06LRAT domain-containing protein n=6 Tax=Moraxellace... [more]
A0A0A1HQW4_9PSED8.300e-747.83Cell wall-associated hydrolases (Invasion-associat... [more]
A0A3M3EBH5_9PSED1.420e-647.83LRAT domain-containing protein n=1 Tax=Pseudomonas... [more]
A0A127GY74_9GAMM1.450e-648.84LRAT domain-containing protein n=1 Tax=Psychrobact... [more]
N8YX35_ACIBZ2.360e-658.54LRAT domain-containing protein n=3 Tax=Acinetobact... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007053LRAT domainPFAMPF04970LRATcoord: 8..43
e-value: 3.4E-9
score: 37.1
IPR007053LRAT domainPROSITEPS51934LRATcoord: 1..47
score: 16.517706
NoneNo IPR availableGENE3D3.90.1720.10endopeptidase domain like (from Nostoc punctiforme)coord: 3..50
e-value: 5.0E-12
score: 48.2
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 78..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..77
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_168_length_41232_cov_4.499891contigNODE_168_length_41232_cov_4.499891:1677..2294 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7969.t1Gcaud7969.t1Gracilaria caudata M_176_S67 malemRNANODE_168_length_41232_cov_4.499891 1677..2294 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7969.t1 ID=Gcaud7969.t1|Name=Gcaud7969.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=109bp
LFFEFINGEEVERRARNSLGTQGYHLLFQNCENFARWCVTGRSSSVQAQG
AFIGLLGGLVCRVLGGGVLGCILTAVVTQKAWDNARNGSDTRVGLSGDDS
DDDDVYLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007053LRAT_dom