Gcaud7943.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7943.t1
Unique NameGcaud7943.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length261
Homology
BLAST of Gcaud7943.t1 vs. uniprot
Match: A0A2V3IW42_9FLOR (MRP-S28 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IW42_9FLOR)

HSP 1 Score: 278 bits (710), Expect = 8.580e-91
Identity = 157/243 (64.61%), Postives = 190/243 (78.19%), Query Frame = 0
Query:   21 STVLFLDRRYFSSNGNGEKNGPKGEEHDSDAMVEE--DEFGIEGFEIIDETEEE-VDLVDQAINMHEEDITPELASDLVARMVEATTRKMTERTSASILPAITPHTISCLRATRICTNTIQTSLPEPFTYPIEKKVTAEINIDSLNLSRPAAEALKILSGPRLKEEGLVRIACNRFPSLEENRAHIVTQIDRLVAAAKTAVGESLDLKPLHTWAEIKEEVERVATEEIQEAGDIQLVLGEAKQ 260
            STV       + S G+ +     G+E DS  +++E  +EFGI+GFEI++E EEE V+   + +   EEDITPELAS+LVARMVEATTR+M+ERTSAS+L  ITPHTI+CLRA+RI TNTIQ +  + F +PIEKKVTAEINIDSLNLSRPA  AL+ILSGPRL++  LV I CNRFPSLEENRAHIVTQIDRLVA AKTAVGE+LDL+PLH+W EI+ EV  +A+EE+ EAG I  VLGE KQ
Sbjct:   18 STVQRCRGSRWLSTGSKKVGKGTGKEEDSSDIIDESEEEFGIDGFEILNEIEEEDVEATLEKVQTEEEDITPELASELVARMVEATTRRMSERTSASLLSCITPHTITCLRASRISTNTIQAAGSDLFKHPIEKKVTAEINIDSLNLSRPARAALEILSGPRLRDN-LVHIGCNRFPSLEENRAHIVTQIDRLVAGAKTAVGENLDLRPLHSWDEIRREVNEIASEEVHEAGGIHFVLGETKQ 259          
BLAST of Gcaud7943.t1 vs. uniprot
Match: A0A2V3IVU2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVU2_9FLOR)

HSP 1 Score: 87.8 bits (216), Expect = 2.920e-17
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 0
Query:   97 ARMVEATTRKMTERTSASILPAITPHTISCLRATRICTNTIQTSLPEPFTYPIEKKVTA---EINIDSLNLSRPAAEALKIL 175
            ARMVEA TR+ TERT+AS+LP ITPH+ISCLRATRI T+ I+T LPE +T+PIE+KVT+   E+ +  L+ +   A  L+++
Sbjct:   97 ARMVEAATRRKTERTTASVLPVITPHSISCLRATRISTSKIETFLPESYTHPIERKVTSSPRELQMIKLHENASKARNLRVV 178          
BLAST of Gcaud7943.t1 vs. uniprot
Match: A0A2V3J621_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J621_9FLOR)

HSP 1 Score: 80.5 bits (197), Expect = 2.070e-15
Identity = 41/82 (50.00%), Postives = 61/82 (74.39%), Query Frame = 0
Query:   97 ARMVEATTRKMTERTSASILPAITPHTISCLRATRICTNTIQTSLPEPFTYPIEKKVTA---EINIDSLNLSRPAAEALKIL 175
            A MV+A T + TE+T+AS++P ITPH+ISCLRATRI TN I   +PEP+T+PIEKKVT+   E+ + +L+ +   +  L+++
Sbjct:   36 AHMVKAATLRKTEQTTASVIPVITPHSISCLRATRISTNKIDRFVPEPYTHPIEKKVTSSSGELQMITLHENASKSRNLRVV 117          
BLAST of Gcaud7943.t1 vs. uniprot
Match: A0A2V3IKT6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKT6_9FLOR)

HSP 1 Score: 83.2 bits (204), Expect = 3.260e-15
Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 0
Query:   97 ARMVEATTRKMTERTSASILPAITPHTISCLRATRICTNTIQTSLPEPFTYPIEKKVTA---EINIDSLNLSRPAAEALKIL 175
            ARMVE  +++  ERT+AS+LP ITPH+ISCL ATRI TN I+T +PEP+T+PIEKKVT+   E+ + +L+ +   A  L+++
Sbjct:   97 ARMVETASQRNKERTTASVLPVITPHSISCLPATRISTNKIETFVPEPYTHPIEKKVTSSSRELQMITLHENASKARNLRVV 178          
The following BLAST results are available for this feature:
BLAST of Gcaud7943.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IW42_9FLOR8.580e-9164.61MRP-S28 domain-containing protein n=1 Tax=Gracilar... [more]
A0A2V3IVU2_9FLOR2.920e-1756.10Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J621_9FLOR2.070e-1550.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IKT6_9FLOR3.260e-1552.44Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 66..86
IPR019349Ribosomal protein S24/S35, mitochondrial, conserved domainPFAMPF10213MRP-S28coord: 147..229
e-value: 1.8E-12
score: 47.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1283_length_11823_cov_4.226560contigNODE_1283_length_11823_cov_4.226560:3305..4087 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7943.t1Gcaud7943.t1Gracilaria caudata M_176_S67 malemRNANODE_1283_length_11823_cov_4.226560 3305..4087 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7943.t1 ID=Gcaud7943.t1|Name=Gcaud7943.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=261bp
MIRCSRKVFSVYRALKNESRSTVLFLDRRYFSSNGNGEKNGPKGEEHDSD
AMVEEDEFGIEGFEIIDETEEEVDLVDQAINMHEEDITPELASDLVARMV
EATTRKMTERTSASILPAITPHTISCLRATRICTNTIQTSLPEPFTYPIE
KKVTAEINIDSLNLSRPAAEALKILSGPRLKEEGLVRIACNRFPSLEENR
AHIVTQIDRLVAAAKTAVGESLDLKPLHTWAEIKEEVERVATEEIQEAGD
IQLVLGEAKQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019349Ribosomal_S24/S35_mit