Gcaud7905.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7905.t1
Unique NameGcaud7905.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length340
Homology
BLAST of Gcaud7905.t1 vs. uniprot
Match: A0A2V3IHJ4_9FLOR (Transcription factor TFIIIB component B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHJ4_9FLOR)

HSP 1 Score: 242 bits (617), Expect = 1.140e-74
Identity = 192/327 (58.72%), Postives = 215/327 (65.75%), Query Frame = 0
Query:   18 LRHADAVGLASNGQITINDVIRNIRKRKNRKQMPSTARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEP----QTDVVAPQLTLDENGNIVVDSASLVVSAGTVTNAEAEGGDVTTFENHEYTKHITSATFSKRQNSSKWVAEETERFYQCLRKYGTDFLLMESDFPTRSRRQLKLKFKREERDNPRRIDRALRAKPLPLPTALPKRPAQSNDQQAQNGSRPEQDATRPIANGTPSEQIQHASVQTTTSQQQPSASATQAQTHDPENGDSNEATREAVIKVIGTADDDPEMQDVDLH-TIPLVADDSDDSWGDSE 339
            L H+DA GLA+ GQITI DVIRNIRKRKN K MPSTAR       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       Q  VVAPQLTLDENGNIVVD ASLV+SAG+VTNAEAE G+VTTFENHEYTKHITSAT+SKR++SSKW+A ET+RF+QCL+KYGTDFLLM+ +FP+R+RRQLKLKFKREERDNP RID AL   PL LPT                               TP +                            E G  +EAT E V KV+G A+        D H T+P+   DSDDSWGDS+
Sbjct:   19 LPHSDANGLANGGQITIKDVIRNIRKRKNGKPMPSTARRNLERRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAAVVAPQLTLDENGNIVVDRASLVISAGSVTNAEAESGNVTTFENHEYTKHITSATYSKRKSSSKWLASETDRFFQCLQKYGTDFLLMQREFPSRNRRQLKLKFKREERDNPHRIDLALHGPPLALPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXV--TPDDPAPQ------------------------EEGAHHEATSEVVTKVVGPAEXXXXXH-ADAHPTVPIGVVDSDDSWGDSD 318          
BLAST of Gcaud7905.t1 vs. uniprot
Match: R7QQ09_CHOCR (Myb-like domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ09_CHOCR)

HSP 1 Score: 166 bits (420), Expect = 4.850e-46
Identity = 88/148 (59.46%), Postives = 110/148 (74.32%), Query Frame = 0
Query:  101 DVVAPQLTLDENGNIVVDSASLVVSAGTVTNAEAEGGDVTTFENHEYTKHITSATFSKRQNSSKWVAEETERFYQCLRKYGTDFLLMESDFPTRSRRQLKLKFKREERDNPRRIDRALRAKPLPLPTA--LPKRPAQSNDQQAQNGSR 246
            DVVAPQ+T+DE+GNIV+D +SLVVSAGT TNAE + G VT  ENH ++ HITSAT+SKR+ + KW   ET +FY+ LRK+GTDF LMES FP R+RRQLKLKFKREER+ P ++D+AL   PLPLPT    P  P   N ++    S+
Sbjct:   75 DVVAPQVTIDEDGNIVIDQSSLVVSAGTATNAELDRGAVTV-ENHAFSTHITSATYSKREAAMKWELVETNQFYEALRKFGTDFSLMESSFPKRTRRQLKLKFKREEREFPEKVDKALNEPPLPLPTLKLAPTAPTTQNGREGAESSK 221          
BLAST of Gcaud7905.t1 vs. uniprot
Match: UPI001E1DF89D (uncharacterized protein LOC123544327 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF89D)

HSP 1 Score: 127 bits (318), Expect = 2.260e-29
Identity = 62/123 (50.41%), Postives = 90/123 (73.17%), Query Frame = 0
Query:   99 QTDVVAPQLTLDENGNIVVDSASLVVSAGTVTNAEAEGGDVTTFENHEYTKHITSATFSKRQNSSKWVAEETERFYQCLRKYGTDFLLMESDFPTRSRRQLKLKFKREERDNPRRIDRALRAK 221
            Q  VVAP++T+D++GNIV+D  SLVVSA   ++AE +   +   +N+  T+HITSATFS+R ++ KW  ++ E+F+  L ++GTDF L+E  FPTR+RRQ+KLKFKREER N  R+D  L+ +
Sbjct:  170 QPTVVAPKVTIDDDGNIVIDKESLVVSATATSSAELDQARLVLVDNNAMTRHITSATFSRRDSAQKWEPDDDEKFFHALSRFGTDFSLIEHVFPTRTRRQIKLKFKREERKNRARVDACLKTR 292          
BLAST of Gcaud7905.t1 vs. uniprot
Match: A0A7S1EPR8_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EPR8_9RHOD)

HSP 1 Score: 104 bits (260), Expect = 9.020e-23
Identity = 70/204 (34.31%), Postives = 103/204 (50.49%), Query Frame = 0
Query:   25 GLASNGQITINDVIRNIRKRKNRKQMPSTARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEP---QTDVVAPQLTLDENGNIVVDSASLVVSAGTVTNAEAEGGDVTTFENHEYTK----HITSATFSKRQNSSKWVAEETERFYQCLRKYGTDFLLMESDFPTRSRRQLKLKFKREERDNPRRIDRALRAK 221
            G+  +  I I+++I+N+RK+ N K MPST +                                        +     +   +APQL  D++GNIV+D ASLVV+ G         GD    +  E  +    H++SA+FSKRQ +S W  +ETE FY  LRK+GT+F LMES    R+R+ +K KF REE+ +P R+D AL ++
Sbjct:   20 GVVESCDIQIHEMIKNLRKKNNTKSMPSTVKERIDKKHKRNAQRLLSQDSNQPAGESHRQQQKQQNESGIQRNSLAARNHSLAPQLRFDDDGNIVIDEASLVVTMG------VPSGDELALQQMEAVEVGMNHVSSASFSKRQYASPWSQQETELFYDALRKFGTEFGLMESVLKGRTRKMIKNKFIREEKAHPMRVDAALNSR 217          
BLAST of Gcaud7905.t1 vs. uniprot
Match: M2VXJ2_GALSU (Transcription factor n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VXJ2_GALSU)

HSP 1 Score: 95.1 bits (235), Expect = 1.540e-19
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = 0
Query:  103 VAPQLTLDENGNIVVDSASLVVSAGTVTNAEAEGGDVTTFENHEYTKHITSATFSKRQNSSKWVAEETERFYQCLRKYGTDFLLMESDFPTRSRRQLKLKFKREERDNPRRIDRALRAKP---LPLPTALP 230
            +APQL  D+ GNI VD  SL+V+    T  E++   V    +      + SAT+SKR  + +W  EETE FY+ L+++GTDF L+   FP R+R+Q+K KFKREE+  P ++D AL  +    +PL T +P
Sbjct:   71 MAPQLKFDDEGNITVDEDSLIVATDAPTQVESQVVRVVNGPDR-----VNSATYSKRTTTERWTKEETELFYRGLQQFGTDFSLVAQLFPKRNRKQVKAKFKREEKIAPDKVDAALSLRTTVSVPLETLVP 196          
BLAST of Gcaud7905.t1 vs. uniprot
Match: A0A2J6REM1_9HELO (Myb-like domain-containing protein (Fragment) n=1 Tax=Hyaloscypha variabilis F TaxID=1149755 RepID=A0A2J6REM1_9HELO)

HSP 1 Score: 93.6 bits (231), Expect = 2.090e-18
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 0
Query:  112 NGNIVVDSASLVVSAGTVTNAEAEGGDVTTFENHEYTKHITSATFSKRQNSSKWVAEETERFYQCLRKYGTDFLLMESDFPTRSRRQLKLKFKREERDNPRRIDRALRAKPLPL 225
            +G IV+D  +L +      NA A+  ++T  E +++T+ ITS T+ K + S  W A   E FY+CLR +GTDF ++ S FP R+RRQ+KLKF +EER+NP++I RA+ A   P+
Sbjct:  114 DGQIVMDERTLQIDRQ--KNAAAQRQELTEVEENDFTRVITSGTWMKMERSQVWDAAANELFYECLRTHGTDFEMIASYFPHRNRRQIKLKFNKEERNNPQKITRAMTAPKKPI 225          
BLAST of Gcaud7905.t1 vs. uniprot
Match: UPI0014257CE1 (uncharacterized protein LOC117107875 isoform X1 n=3 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257CE1)

HSP 1 Score: 95.1 bits (235), Expect = 9.000e-18
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 0
Query:  103 VAPQLTLDENGNIVVDSASLVVSAGTVTNAEAEGGDVTTFENHEYTKHITSATFSKRQNSSKWVAEETERFYQCLRKYGTDFLLMESDFPTRSRRQLKLKFKREERDNPRRIDRALRAKPLPLPTAL 229
            +APQ+ +D +G IV+D  SL V A  +     E  +V     HE + ++T A+F KR +++ W   ETERF+  L   GTDF ++ + FP R+R Q+K KFKREER N  R+D+A+R K  PL  A+
Sbjct:  369 LAPQVRIDADGKIVIDKESLTVEASPLRTFVTEDAEVV----HEDSSNVTYASFRKRVHTTAWTKRETERFFMALSMVGTDFSMINALFPKRTRHQIKNKFKREERVNRVRVDKAIREK-TPLVKAM 490          
BLAST of Gcaud7905.t1 vs. uniprot
Match: A0A2J6QDL8_9HELO (Myb-like domain-containing protein (Fragment) n=1 Tax=Hyaloscypha hepaticicola TaxID=2082293 RepID=A0A2J6QDL8_9HELO)

HSP 1 Score: 87.0 bits (214), Expect = 1.300e-17
Identity = 45/107 (42.06%), Postives = 70/107 (65.42%), Query Frame = 0
Query:  112 NGNIVVDSASLVVSAGTVTNAEAEGGDVTTFENHEYTKHITSATFSKRQNSSKWVAEETERFYQCLRKYGTDFLLMESDFPTRSRRQLKLKFKREERDNPRRIDRAL 218
            +G IV+D  +L +    +  A+A   ++T  E +++T+ +TS T+ K + S  W A E   FY CL ++GTDF ++ S FP R+RRQ+KLKF +EER+NP R+ RA+
Sbjct:    5 DGQIVMDDRTLQIDRRKL--AQAHQTEMTEVEENDFTRVVTSGTWMKMERSQAWDAVENALFYDCLSRHGTDFEMIASYFPHRNRRQIKLKFNKEERNNPARVTRAM 109          
BLAST of Gcaud7905.t1 vs. uniprot
Match: S9VTF3_SCHCR (Transcription factor TFIIIB complex subunit bdp1 n=1 Tax=Schizosaccharomyces cryophilus (strain OY26 / ATCC MYA-4695 / CBS 11777 / NBRC 106824 / NRRL Y48691) TaxID=653667 RepID=S9VTF3_SCHCR)

HSP 1 Score: 94.0 bits (232), Expect = 1.440e-17
Identity = 51/110 (46.36%), Postives = 72/110 (65.45%), Query Frame = 0
Query:  112 NGNIVVDSASLVVSAGTVTNAEAEGGDVTTFENHEYTKHITSATFSKRQNSSKWVAEETERFYQCLRKYGTDFLLMESDFPTRSRRQLKLKFKREERDNPRRIDRALRAK 221
            +G IV+D ASL +          E  +    E +  ++ +TSAT+  RQ S KW A+ETE+FY+ L ++GTDF L+ + FP R+RRQ+KLKFK+EE+ NP RI+ ALR K
Sbjct:  319 DGQIVLDEASLEIDRHQRDYVPEEDREFV--EENALSRRVTSATWGNRQKSEKWKADETEKFYKALSQWGTDFALISNMFPIRNRRQIKLKFKQEEKRNPARINEALRTK 426          
BLAST of Gcaud7905.t1 vs. uniprot
Match: S9PZX9_SCHOY (Transcription factor TFIIIB complex subunit bdp1 n=1 Tax=Schizosaccharomyces octosporus (strain yFS286) TaxID=483514 RepID=S9PZX9_SCHOY)

HSP 1 Score: 92.8 bits (229), Expect = 3.520e-17
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 0
Query:  112 NGNIVVDSASLVVSAGTVTNAEAEGGDVTTFENHEYTKHITSATFSKRQNSSKWVAEETERFYQCLRKYGTDFLLMESDFPTRSRRQLKLKFKREERDNPRRIDRALRAK 221
            +G IV+D ASL V          E  +    E +  ++ +TSAT+  RQ S KW ++ET++FY+ L ++GTDF L+ + FP+R+RRQ+KLKFK+EE+ NP RI+ ALR K
Sbjct:  317 DGQIVLDEASLEVDRHERDYVPEEDREFV--EENALSRRVTSATWGNRQKSEKWKSDETDKFYKALSQWGTDFALISNMFPSRNRRQIKLKFKQEEKRNPARINEALRTK 424          
The following BLAST results are available for this feature:
BLAST of Gcaud7905.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IHJ4_9FLOR1.140e-7458.72Transcription factor TFIIIB component B n=1 Tax=Gr... [more]
R7QQ09_CHOCR4.850e-4659.46Myb-like domain-containing protein n=1 Tax=Chondru... [more]
UPI001E1DF89D2.260e-2950.41uncharacterized protein LOC123544327 n=1 Tax=Merce... [more]
A0A7S1EPR8_9RHOD9.020e-2334.31Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M2VXJ2_GALSU1.540e-1941.98Transcription factor n=1 Tax=Galdieria sulphuraria... [more]
A0A2J6REM1_9HELO2.090e-1843.86Myb-like domain-containing protein (Fragment) n=1 ... [more]
UPI0014257CE19.000e-1842.52uncharacterized protein LOC117107875 isoform X1 n=... [more]
A0A2J6QDL8_9HELO1.300e-1742.06Myb-like domain-containing protein (Fragment) n=1 ... [more]
S9VTF3_SCHCR1.440e-1746.36Transcription factor TFIIIB complex subunit bdp1 n... [more]
S9PZX9_SCHOY3.520e-1745.45Transcription factor TFIIIB complex subunit bdp1 n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 161..209
e-value: 1.1E-6
score: 38.2
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 164..205
e-value: 6.09965E-6
score: 40.6366
IPR039467Transcription factor TFIIIB component B'', Myb domainPFAMPF15963Myb_DNA-bind_7coord: 155..221
e-value: 1.4E-25
score: 88.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..292
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..339
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..219
NoneNo IPR availablePANTHERPTHR22929:SF0TRANSCRIPTION FACTOR TFIIIB COMPONENT B'' HOMOLOGcoord: 30..220
NoneNo IPR availablePANTHERPTHR22929RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR Bcoord: 30..220
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 163..211

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_323_length_30158_cov_4.260851contigNODE_323_length_30158_cov_4.260851:13050..14069 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7905.t1Gcaud7905.t1Gracilaria caudata M_176_S67 malemRNANODE_323_length_30158_cov_4.260851 13050..14069 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7905.t1 ID=Gcaud7905.t1|Name=Gcaud7905.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=340bp
MSEAPYSDEEDEDRTTNLRHADAVGLASNGQITINDVIRNIRKRKNRKQM
PSTARRNEQRRQRRRTHLQQPQPPASEQQDPPASSPSPPPPPPQEQEPQT
DVVAPQLTLDENGNIVVDSASLVVSAGTVTNAEAEGGDVTTFENHEYTKH
ITSATFSKRQNSSKWVAEETERFYQCLRKYGTDFLLMESDFPTRSRRQLK
LKFKREERDNPRRIDRALRAKPLPLPTALPKRPAQSNDQQAQNGSRPEQD
ATRPIANGTPSEQIQHASVQTTTSQQQPSASATQAQTHDPENGDSNEATR
EAVIKVIGTADDDPEMQDVDLHTIPLVADDSDDSWGDSE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR039467TFIIIB_B''_Myb
IPR009057Homeobox-like_sf