Gcaud7903.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7903.t1
Unique NameGcaud7903.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length327
Homology
BLAST of Gcaud7903.t1 vs. uniprot
Match: A0A2V3IHL0_9FLOR (Trafficking protein particle complex subunit 12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHL0_9FLOR)

HSP 1 Score: 332 bits (852), Expect = 3.060e-110
Identity = 189/309 (61.17%), Postives = 231/309 (74.76%), Query Frame = 0
Query:   19 LRELHALSANYQWVSVLQRASKLRAADDDGSIKLLPHESLHVSAYKVLALLQTRQLERATSEITSLGSLTAHNQQYRFETYAHHYAN-RVGTFVPFCLHVVALEAAIRRGEVGAIDALHRSAASLHGTQRQLVLSLAAAAHARMGQLEASVEVILQLARQHPTIGALQALSRVLLMSGDIESAANVLRENDCADDIHLALLHGARAQYDVADAIYQRVIEQCADQVAVKIAVSNGAVCRLQKGRLDDAVLQMEHAV-ENGAHMFDEGVLFNLATLYELALADGASVKKTQLANMASRCGRQGFDLQLLN 325
            L+ LH LSA YQWVSVLQ AS LR A+DDGS+KLLPH+ LHV+AY++LALLQTRQLERAT+EI++LG+L+ HN +YR+E+YA  YA  R G+FVPFCLHVVALEAAIRRGE GA+DA+H  AA + G QR L+LS AA AHAR+GQ+EASVEV+LQL R++    ALQ LSR LL  GD+E A NV+      D    ALL   + +Y  A A YQ    +C      K AVSNGAVC L  GRL++AV  +E AV + G  + DEGVLFNLAT+YELA  +GA+ KK+QLAN+AS+ GRQGFD+QLLN
Sbjct:   27 LQLLHQLSAKYQWVSVLQHASTLRMAEDDGSLKLLPHQQLHVAAYRILALLQTRQLERATAEISALGTLSEHNPKYRYESYAKLYAEARCGSFVPFCLHVVALEAAIRRGEAGAVDAIHAHAARVSGVQRALLLSCAACAHARVGQMEASVEVVLQLVRENYNQHALQTLSRALLAVGDVECATNVVDSVATRDATLDALLSAVKGEYAEALARYQ---SECGGG---KTAVSNGAVCLLHLGRLEEAVRLVETAVLDGGEDVLDEGVLFNLATMYELAEPEGAAGKKSQLANVASQRGRQGFDVQLLN 329          
BLAST of Gcaud7903.t1 vs. uniprot
Match: A0A7S1TG02_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TG02_9RHOD)

HSP 1 Score: 95.5 bits (236), Expect = 2.580e-19
Identity = 80/248 (32.26%), Postives = 126/248 (50.81%), Query Frame = 0
Query:  112 PFCLHVVALEAAIRRGEVGAIDALHRSAASLHGTQRQLV--------------------LSLAAAAHARMGQLEASVEVILQLA---RQHPTIGALQALSRVLLMSGDIESAANVLREN-------DCADDIHLALLHGARAQ----YDVADAIYQRVIEQCADQVAVKIAVSNGAVCRLQKGRLDDAVLQMEHAVENGAH-MFDEGVLFNLATLYELALADGASVKKTQLANMASRCGRQGFDLQLL 324
            PF L  + LE A R+ +V  ID  +     L   Q  ++                    LSL      R+ + +A+++ I +LA   R+  T+ AL A  RVLL   ++++A  V+R         +   ++H  LL  ARAQ    ++ A A + RV+E    Q +  +A++N A+C L  GRL DA+  +E A+      + DEG++FNL TLY+L+  DG+  KK  L  +AS+ GRQGF+L ++
Sbjct:    9 PFSLLALTLEVAARQNDVKVIDQAYALKEKLMSGQLDVIGDVEPGPDGFSPRDRKCLYLLSLIVGYSLRLQRHDAALDAIRELATLTREEDTLVAL-AYVRVLLNLFEVDAAEKVMRSTIEKGNVEEELIELHKGLLCAARAQTTQDFEDAMAHFIRVLEI---QPSSAVAINNQAICLLHLGRLRDAIHLLESALHRDPEALLDEGLVFNLCTLYDLSCPDGSKEKKVALRRLASKYGRQGFNLDVI 252          
BLAST of Gcaud7903.t1 vs. uniprot
Match: A0A7S2ZJ89_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZJ89_9RHOD)

HSP 1 Score: 73.9 bits (180), Expect = 3.100e-11
Identity = 67/285 (23.51%), Postives = 138/285 (48.42%), Query Frame = 0
Query:   15 DLSPLRELHALSANYQWVSVLQRASKLRAADDDGSIKLLPHESLHVSAYKVLALLQTRQLERATSEITSLGSLTAHNQQYRFETYAHHYANRVGTFVPFCLHVVALEAAIRRGEVGAIDALHR------------------SAASLHGTQRQLVLSLAAAAHARMGQLEASVEVILQLARQHPTIGALQ-ALSRVLLMSGDIESAANVLRE-----NDCADDIHL--ALLHGARAQYDVADAIYQRVIEQCADQVAVKIAVSNGAVCRLQKGRLDDAVLQMEHAV 273
            D+  +  +  L+++  W +VL+ +  +      G ++L  +  L V  +++ A++QTRQ +RA  +I ++       ++Y  E           T+VPF L  ++++   R+G   A++A +                   +  ++  ++ Q++LS  AA + R  +++A+++ + +L R++P       AL R+L++SG+  +A  VL       N  A +IH+   ++  A   +D A   ++  I   +   A   A +N A+C L  GR+D+A+ ++  AV
Sbjct:   43 DVVTIDSIKYLASSLAWGAVLEASGSIL----HGDVQLDINTKLEVITFRIAAMMQTRQFDRAAEQIAAIRE---DMRKYFLEASDGLGEKLESTYVPFELKALSVDILARKGSPKALEAFYELKDHIEIQHKACSERSDGAGVAVWRSREQMLLSSLAAYYLRSQKIDAALDTVRELIRRNPDSAVYCFALLRILVLSGNFSAAREVLSRAAEYHNVTATEIHMHRGIILAAEGSFDEALDEFEGAILLDSRNTA---AANNAAICLLHLGRIDEAIEKLVSAV 317          
BLAST of Gcaud7903.t1 vs. uniprot
Match: C3ZI67_BRAFL (Uncharacterized protein n=3 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZI67_BRAFL)

HSP 1 Score: 65.5 bits (158), Expect = 4.960e-8
Identity = 75/266 (28.20%), Postives = 122/266 (45.86%), Query Frame = 0
Query:   54 PHESLHVSAYKVLALLQTRQLERATSEITSLGSLTAHNQQYRFETYAHHYANRVGTFVPFCLHVVALEAAIRRGEVG-AIDALHRSAASLHGTQRQLVLSLAAAAHARMGQLEASVEVILQLARQHPTIGALQALSRVLLMSGDI-------ESAANVLRENDCADDI---HLALLHGARAQYDVADAIYQRVIEQCADQVAVKIAVSNGAVCRLQKGRLDDAVLQMEHAVENGAHMF-DEGVLFNLATLYELALADGASVKKTQL 307
            PH SL +   ++  L++ R    A +E+ + GSL   +  Y F  Y   Y  R GT VPF   V+  E     G+   A+D L+     L GT  Q   +LA          E    ++ Q     P I  L A+ R+ L  GD+       E A  +L + +  + +   + A L   +  +  +  ++++V +   D     +A++N AVC+L  G L +A+  +E+ V+   + F  EG+LFNL T+YEL  +   + K T L
Sbjct:  636 PH-SLQLWFTRIALLVRLRMFSTAEAELEAFGSLDQPDLYYEF--YPDTYKGRRGTMVPFHFRVLHAELPQYLGKPHEALDRLYH----LLGTCNQ-DFNLA---------YETMDTILSQEIGDTPQI--LSAMGRIKLQLGDVRGAQQCFEKAEPLLEDEEDGEAVKTTNKAFLALGQGSFAESCQLFEQVYKLQPDN---GVAINNTAVCQLYLGNLKEALKMLENVVQEDPNRFVQEGLLFNLCTMYELESSRALAKKHTML 879          
BLAST of Gcaud7903.t1 vs. uniprot
Match: R7TBI7_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TBI7_CAPTE)

HSP 1 Score: 61.2 bits (147), Expect = 8.410e-7
Identity = 47/150 (31.33%), Postives = 75/150 (50.00%), Query Frame = 0
Query:  187 LSRVLLMSGDIESAANVL----REND-------CADDIHLALLHGARAQYDVADAIYQRVIEQCADQVAVKIAVSNGAVCRLQKGRLDDAVLQMEHAVENGAHM-FDEGVLFNLATLYELALADGASVKKTQLANMASRCGRQGFDLQLL 324
            ++R  L  GD++S  + +     E D       C + I+   L   +  +  A   +Q  +E   + V   IAV+N AVC L  G+L +A+  +E  V+   H+   EG+LFNL+TLYEL  +  A  KK  L N+ ++    GF++  L
Sbjct:  307 IARTYLQMGDLKSGMHYIDLFSAEIDPEDVKLCCINQINRGFLAIGQNNFPEAQKCFQNALEYEPNNV---IAVNNMAVCYLYMGKLKEALYSLEGLVQESPHLHLQEGLLFNLSTLYELQ-SSRAMNKKQTLLNLVNKHKGNGFNVACL 452          
The following BLAST results are available for this feature:
BLAST of Gcaud7903.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IHL0_9FLOR3.060e-11061.17Trafficking protein particle complex subunit 12 n=... [more]
A0A7S1TG02_9RHOD2.580e-1932.26Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S2ZJ89_9RHOD3.100e-1123.51Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
C3ZI67_BRAFL4.960e-828.20Uncharacterized protein n=3 Tax=Branchiostoma flor... [more]
R7TBI7_CAPTE8.410e-731.33Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 32..308
e-value: 1.8E-6
score: 29.4
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 150..274
NoneNo IPR availablePANTHERPTHR21581D-ALANYL-D-ALANINE CARBOXYPEPTIDASEcoord: 9..320
NoneNo IPR availablePANTHERPTHR21581:SF6TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 12coord: 9..320

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_323_length_30158_cov_4.260851contigNODE_323_length_30158_cov_4.260851:7774..8754 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7903.t1Gcaud7903.t1Gracilaria caudata M_176_S67 malemRNANODE_323_length_30158_cov_4.260851 7774..8754 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7903.t1 ID=Gcaud7903.t1|Name=Gcaud7903.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=327bp
MDDNDASPPRARSADLSPLRELHALSANYQWVSVLQRASKLRAADDDGSI
KLLPHESLHVSAYKVLALLQTRQLERATSEITSLGSLTAHNQQYRFETYA
HHYANRVGTFVPFCLHVVALEAAIRRGEVGAIDALHRSAASLHGTQRQLV
LSLAAAAHARMGQLEASVEVILQLARQHPTIGALQALSRVLLMSGDIESA
ANVLRENDCADDIHLALLHGARAQYDVADAIYQRVIEQCADQVAVKIAVS
NGAVCRLQKGRLDDAVLQMEHAVENGAHMFDEGVLFNLATLYELALADGA
SVKKTQLANMASRCGRQGFDLQLLNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf