Gcaud7887.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7887.t1
Unique NameGcaud7887.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length368
Homology
BLAST of Gcaud7887.t1 vs. uniprot
Match: A0A2V3IIW3_9FLOR (RNA polymerase sigma factor SigA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIW3_9FLOR)

HSP 1 Score: 602 bits (1552), Expect = 1.700e-215
Identity = 311/367 (84.74%), Postives = 334/367 (91.01%), Query Frame = 0
Query:    1 MIAAPRRRGRPRTRRARVNTPSSPDSSAPPEKATNTAPNSPAPAHHHQNLSDNTVRWYLQLIGTDRLLTAEEEVKYGRLVGLLMQWQRRRVALSDAIGRQPTDDEWADFVDVDRHTFRTQLSEARKAKDKMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRSIADQSRTVRLPVHLYDTITAIRRATKYLTNELGRPPLEHEVAEYCNISVEKLRSTRVNMQSAMPLDCPLANTDDALTLSDVIESNAESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAYTPPGS 367
            MIAAP+RRGRPRTRRAR + P S DSS      T T+  +  PA    ++SDNTVRWYLQLIG+DRLLTAEEEV+YGR V  LM WQR RV L+D IGR+P+D EWADFVD+DR TF TQL +ARKAKD+MIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDA+KGFKFSTYATWWVRQAVTR+IADQSRT+RLPVHLYDTITAIRRATKYLTNELGRPPLE E+AEYCNI+VEKLRSTR+NMQ+AMPLDCPL N+DDALTLSDVIES+ ESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAYTPPGS
Sbjct:    1 MIAAPKRRGRPRTRRAR-SEPLSSDSST-----TKTSNPAKKPASSSPSVSDNTVRWYLQLIGSDRLLTAEEEVEYGRQVRKLMHWQRNRVELADTIGREPSDSEWADFVDIDRQTFATQLVDARKAKDRMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDAEKGFKFSTYATWWVRQAVTRAIADQSRTIRLPVHLYDTITAIRRATKYLTNELGRPPLEREIAEYCNITVEKLRSTRINMQAAMPLDCPLTNSDDALTLSDVIESDEESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAYTPPGS 361          
BLAST of Gcaud7887.t1 vs. uniprot
Match: R7QJX2_CHOCR (RNA_pol_sigma70 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJX2_CHOCR)

HSP 1 Score: 526 bits (1356), Expect = 1.970e-183
Identity = 261/316 (82.59%), Postives = 291/316 (92.09%), Query Frame = 0
Query:   50 LSDNTVRWYLQLIGTDRLLTAEEEVKYGRLVGLLMQWQRRRVALSDAIGRQPTDDEWADFVDVDRHTFRTQLSEARKAKDKMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRSIADQSRTVRLPVHLYDTITAIRRATKYLTNELGRPPLEHEVAEYCNISVEKLRSTRVNMQSAMPLDCPLANTDDALTLSDVIESNAESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAYTPP 365
            L+DNTVRWYLQLIG DRLL AEEEV  GR +  LMQWQR  V L+D+IGRQP+ +EWA ++ +D   F T+L  A++AKD+MIVCNLRLVVSIAKRY+NRGMPLSDLIQEGTLGLIRACEKFDA++GFKFSTYATWWVRQAVTRSIADQSRT+RLPVHLYDTI AIRRATK+LTNELGRPPLE E+A+YC I+VEKLR+TRVNMQSA+PLDCPL+++DDALTLSDVIES+ ESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGR FDVTKERVRQIESKALRKLRHP+RSA+L+ YTPP
Sbjct:  189 LADNTVRWYLQLIGGDRLLRAEEEVTLGRQIRDLMQWQRMFVELADSIGRQPSTNEWAQYMGMDETDFATRLLHAKRAKDRMIVCNLRLVVSIAKRYMNRGMPLSDLIQEGTLGLIRACEKFDAERGFKFSTYATWWVRQAVTRSIADQSRTIRLPVHLYDTILAIRRATKFLTNELGRPPLEQEIADYCKITVEKLRATRVNMQSALPLDCPLSSSDDALTLSDVIESDEESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRAFDVTKERVRQIESKALRKLRHPYRSAILREYTPP 504          
BLAST of Gcaud7887.t1 vs. uniprot
Match: A0A7S2ZBG5_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZBG5_9RHOD)

HSP 1 Score: 419 bits (1076), Expect = 1.530e-141
Identity = 205/313 (65.50%), Postives = 254/313 (81.15%), Query Frame = 0
Query:   51 SDNTVRWYLQLIGTDRLLTAEEEVKYGRLVGLLMQWQRRRVALSDAIGRQPTDDEWADFVDVDRHTFRTQLSEARKAKDKMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRSIADQSRTVRLPVHLYDTITAIRRATKYLTNELGRPPLEHEVAEYCNISVEKLRSTRVNMQSAMPLDCPLANTDDA-LTLSDVIESNAESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 362
            SDNTVRWYL+L+G  RLL AEEEV   R +  L+QW+R R  + + +GR PT +EWA+ +++D   F++QL + RKAK+KMI  NLRLVVSIAKRY NRG+PLSD+IQEGTLGL+RA EKFD  +G+KFSTYATWWV+QAV R+IAD SR +RLPVHLYDTI A+RRAT+ LT  LGR P E E+A Y  +S+ KLRSTR++M   +PL+ PL   DDA + L DV++S   SPEDRVE +LLR+DLEHV+NSL+PRERDVVRMRYGLDDGR KTL+EIGR+F V+KERVRQIE+KA+RKLRHP+RSAVL+ +
Sbjct:  152 SDNTVRWYLELVGKGRLLRAEEEVDLSRRIAQLLQWERHRQQMYEEMGRDPTVEEWAEALEMDIKDFQSQLFQCRKAKEKMITSNLRLVVSIAKRYANRGLPLSDMIQEGTLGLVRAAEKFDGSRGYKFSTYATWWVKQAVARAIADHSRNIRLPVHLYDTIAAVRRATRCLTESLGRSPSEEEIAAYLGLSISKLRSTRIHMMPTIPLESPLKEVDDAGMCLGDVLQSTEVSPEDRVERALLREDLEHVINSLSPRERDVVRMRYGLDDGRMKTLDEIGRMFCVSKERVRQIETKAIRKLRHPYRSAVLRDF 464          
BLAST of Gcaud7887.t1 vs. uniprot
Match: Q8S9D0_GUITH (RNA polymerase sigma factor n=1 Tax=Guillardia theta TaxID=55529 RepID=Q8S9D0_GUITH)

HSP 1 Score: 393 bits (1009), Expect = 4.450e-131
Identity = 197/313 (62.94%), Postives = 249/313 (79.55%), Query Frame = 0
Query:   51 SDNTVRWYLQLIGTDRLLTAEEEVKYGRLVGLLMQWQRRRVALSDAIGRQPTDDEWADFVDV-DRHTFRTQLSEARKAKDKMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRSIADQSRTVRLPVHLYDTITAIRRATKYLTNELGRPPLEHEVAEYCNISVEKLRSTRVNMQSAMPLDCPLANTDDALTLSDVIESNAESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 362
            +D++VRWYLQLIG  RLL  EEE++  R +  L+ W+  +++L + + R+PT  EW     V D   FR+ L  AR+AK++M+  NLRLVVSIAKRY+NRGM L DLIQEG+LGLIRA EKFD++KGFKFSTYATWWV+QAVTR+IAD SRT+RLPVHLYDTI+AIR+ T+ L  E+GR P E E+AE  ++SVEKLRS   + Q  + L+ PL N DDA  LSD IE++ ESPE+ VE S+LRDDLE+V+NSL+PRERDVVRMRYGLDDGR KTLEEIG++F VT+ERVRQIE+KA+RKLR P+RS++L+ Y
Sbjct:  128 ADDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDY 440          
BLAST of Gcaud7887.t1 vs. uniprot
Match: J7G2H9_9CRYP (RNA-polymerase sigma factor n=1 Tax=Chroomonas mesostigmatica CCMP1168 TaxID=1195612 RepID=J7G2H9_9CRYP)

HSP 1 Score: 392 bits (1008), Expect = 5.370e-131
Identity = 197/313 (62.94%), Postives = 248/313 (79.23%), Query Frame = 0
Query:   51 SDNTVRWYLQLIGTDRLLTAEEEVKYGRLVGLLMQWQRRRVALSDAIGRQPTDDEWADFVDV-DRHTFRTQLSEARKAKDKMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRSIADQSRTVRLPVHLYDTITAIRRATKYLTNELGRPPLEHEVAEYCNISVEKLRSTRVNMQSAMPLDCPLANTDDALTLSDVIESNAESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 362
            +D++VRWYLQLIG  RLL  EEE++  R +  L+ W+  +++L + + R+PT  EW     V D   FR  L  AR+AK++M+  NLRLVVSIAKRY+NRGM L DLIQEG+LGLIRA EKFD++KGFKFSTYATWWV+QAVTR+IAD SRT+RLPVHLYDTI+AIR+ T+ L  E+GR P E E+AE  ++SVEKLRS   + Q  + L+ PL N DDA  LSD IE++ ESPE+ VE S+LRDDLE+V+NSL+PRERDVVRMRYGLDDGR KTLEEIG++F VT+ERVRQIE+KA+RKLR P+RS++L+ Y
Sbjct:  131 ADDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDY 443          
BLAST of Gcaud7887.t1 vs. uniprot
Match: A9BK56_HEMAN (RpoD n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BK56_HEMAN)

HSP 1 Score: 392 bits (1008), Expect = 5.370e-131
Identity = 197/313 (62.94%), Postives = 248/313 (79.23%), Query Frame = 0
Query:   51 SDNTVRWYLQLIGTDRLLTAEEEVKYGRLVGLLMQWQRRRVALSDAIGRQPTDDEWADFVDV-DRHTFRTQLSEARKAKDKMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRSIADQSRTVRLPVHLYDTITAIRRATKYLTNELGRPPLEHEVAEYCNISVEKLRSTRVNMQSAMPLDCPLANTDDALTLSDVIESNAESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 362
            +D++VRWYLQLIG  RLL  EEE++  R +  L+ W+  +++L + + R+PT  EW     V D   FR  L  AR+AK++M+  NLRLVVSIAKRY+NRGM L DLIQEG+LGLIRA EKFD++KGFKFSTYATWWV+QAVTR+IAD SRT+RLPVHLYDTI+AIR+ T+ L  E+GR P E E+AE  ++SVEKLRS   + Q  + L+ PL N DDA  LSD IE++ ESPE+ VE S+LRDDLE+V+NSL+PRERDVVRMRYGLDDGR KTLEEIG++F VT+ERVRQIE+KA+RKLR P+RS++L+ Y
Sbjct:  128 ADDSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDY 440          
BLAST of Gcaud7887.t1 vs. uniprot
Match: Q98RZ3_GUITH (RNA-polymerase sigma factor n=2 Tax=Guillardia theta TaxID=55529 RepID=Q98RZ3_GUITH)

HSP 1 Score: 390 bits (1003), Expect = 1.370e-130
Identity = 195/318 (61.32%), Postives = 250/318 (78.62%), Query Frame = 0
Query:   51 SDNTVRWYLQLIGTDRLLTAEEEVKYGRLVGLLMQWQRRRVALSDAIGRQPTDDEWADFVDV-DRHTFRTQLSEARKAKDKMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRSIADQSRTVRLPVHLYDTITAIRRATKYLTNELGRPPLEHEVAEYCNISVEKLRSTRVNMQSAMPLDCPLANTDDALTLSDVIESNAESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAYTPPGS 367
            +D++VRWYLQLIG  RLL  +EE++  R +  L+ W+  +++L D + R+PT+ EW     V D   FR+ L  AR+AK++M+  NLRLVVSIAKRY+NRGM L DLIQEG+LGLIRA EKFD++KGFKFSTYATWWV+QAVTR+IAD SRT+RLPVHLYDTI+AIR+ T+ L  E+GR P E E+A+  ++SVEKLR+   + Q  + L+ PL N DD   LSD IE++ ESPE+ VE S+LRDDLE+V+NSL+PRERDVVRMRYGLDDGR KTLEEIG++F VT+ERVRQIE+KA+RKLR P+RS++L+ Y    S
Sbjct:  111 ADDSVRWYLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACKVSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTEEEIAKRMDMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDYVASNS 428          
BLAST of Gcaud7887.t1 vs. uniprot
Match: A0A5J4YY77_PORPP (RNA polymerase sigma factor SigA n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YY77_PORPP)

HSP 1 Score: 393 bits (1010), Expect = 2.800e-130
Identity = 192/311 (61.74%), Postives = 247/311 (79.42%), Query Frame = 0
Query:   52 DNTVRWYLQLIGTDRLLTAEEEVKYGRLVGLLMQWQRRRVALSDAIGRQPTDDEWADFVDVDRHTFRTQLSEARKAKDKMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRSIADQSRTVRLPVHLYDTITAIRRATKYLTNELGRPPLEHEVAEYCNISVEKLRSTRVNMQSAMPLDCPLANTDDALTLSDVIESNAESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 362
            D++V WY +LIG   LL+++EEV+  R + +L+ W+R R AL++ + R+P+D EWA  V  D  +F   L   R A+D+M++ NLRLVVSIAKRY +RG+PL D+IQEGTLGLIRA EKFD ++GFKFSTYATWWV+QAVTRSIAD SRT+RLPVHLY+T+ AI+RAT+ L  + GR P + E+++Y  ++++KLRS R++MQ  +PLD PL   D   TL ++IE   + PEDRVE SLLR+DLEHVVNSL+PRERDVVRMRYGLDDGR KTLEEIGRVF VTKERVRQIE+KA+RKLRHP+R+ VL+ +
Sbjct:  247 DDSVGWYSRLIGDQNLLSSQEEVELSRQIAILLAWERERDALAETLNREPSDKEWAAHVGQDEASFERDLFLYRAARDRMVLSNLRLVVSIAKRYTSRGLPLGDMIQEGTLGLIRASEKFDGERGFKFSTYATWWVKQAVTRSIADNSRTIRLPVHLYETVNAIKRATRTLNEQHGRAPTDAELSKYMGMTMKKLRSLRIHMQPVVPLDKPLKVDDGTTTLGEIIECEDDPPEDRVEQSLLREDLEHVVNSLSPRERDVVRMRYGLDDGRVKTLEEIGRVFAVTKERVRQIENKAIRKLRHPYRAGVLRDF 557          
BLAST of Gcaud7887.t1 vs. uniprot
Match: A0A7S1TCA4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TCA4_9RHOD)

HSP 1 Score: 391 bits (1004), Expect = 7.180e-130
Identity = 195/313 (62.30%), Postives = 246/313 (78.59%), Query Frame = 0
Query:   50 LSDNTVRWYLQLIGTDRLLTAEEEVKYGRLVGLLMQWQRRRVALSDAIGRQPTDDEWADFVDVDRHTFRTQLSEARKAKDKMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRSIADQSRTVRLPVHLYDTITAIRRATKYLTNELGRPPLEHEVAEYCNISVEKLRSTRVNMQSAMPLDCPLANTDDALTLSDVIESNAESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 362
            +  +T+ W++ LI  DRLL  +EEV+  R + LL+ W+R+R  L+D++ R+PT  EWA  V  +   F   L E R AK+KM+V NLRLVVSIAK+Y+NRG+PLSD+IQEGT+GLIRA EKFD  +GFKFSTYATWWV+QAV R+IADQSRT+RLPVHLYDT+ +IR+ T+ LT ELGR P E E+A    I + KLR+TRV MQ  +PLD P+   +D+LTL ++IE   E PE+RVE SLLR+DLEHVVNSL+PRERDVVRMR+GLDDGR KTL+EIGRVF V+KERVRQIE+KA+RKLR P RS+VL+ +
Sbjct:  208 VGQDTLPWFMGLISGDRLLRTDEEVELSRQIALLLNWERKRTELADSLSREPTLSEWALQVGCNPEEFNFHLCEYRSAKEKMVVSNLRLVVSIAKKYMNRGLPLSDMIQEGTMGLIRAAEKFDGTRGFKFSTYATWWVKQAVARAIADQSRTIRLPVHLYDTLWSIRKVTRALTEELGRNPTEKEIATRVGIPIPKLRATRVYMQPCIPLDNPVQVNEDSLTLGEIIECEDECPEERVEQSLLREDLEHVVNSLSPRERDVVRMRFGLDDGRVKTLDEIGRVFCVSKERVRQIETKAIRKLRKPCRSSVLQDF 520          
BLAST of Gcaud7887.t1 vs. uniprot
Match: A0A7S0ZI13_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZI13_9RHOD)

HSP 1 Score: 382 bits (981), Expect = 1.140e-126
Identity = 193/312 (61.86%), Postives = 235/312 (75.32%), Query Frame = 0
Query:   51 SDNTVRWYLQLIGTDRLLTAEEEVKYGRLVGLLMQWQRRRVALSDAIGRQPTDDEWADFVDVDRHTFRTQLSEARKAKDKMIVCNLRLVVSIAKRYLNRGMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRSIADQSRTVRLPVHLYDTITAIRRATKYLTNELGRPPLEHEVAEYCNISVEKLRSTRVNMQSAMPLDCPLANTDDALTLSDVIESNAESPEDRVESSLLRDDLEHVVNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKLRHPFRSAVLKAY 362
            SDN V WYL+LI    LLT EEEV+Y R + +L++W+R R  L     R+ TD EWA +++++   F + L   R ++DKMIV NLRLVV IAK+YLNRG+P SD+IQEGTLGLIRA EK+D ++GFKFSTYATWWV+QAV RSIAD +R +RLPVHLYDT+  IR+  + L  E G  P + EVAEY  ISV KLRS +V MQ    LD P+   D  LTL ++IE   E PE+RVE SLLR D+EHVVNSL+PRERDVVRMRYGLDDGR KTL+EIG VF VTKERVRQIE+KA+RKLRHP+RS VL+ +
Sbjct:  189 SDNVVAWYLRLIADGNLLTHEEEVRYSRHISILLEWERVRAELEVKYEREVTDHEWAKYLNIEISEFLSNLQLYRNSRDKMIVSNLRLVVHIAKKYLNRGLPFSDMIQEGTLGLIRAAEKYDGERGFKFSTYATWWVKQAVARSIADSARAIRLPVHLYDTVNLIRKTVRGLAQESGVAPSDSEVAEYLGISVAKLRSMKVLMQPIGCLDQPVRKDDGVLTLGELIECEQEQPEERVEHSLLRQDIEHVVNSLSPRERDVVRMRYGLDDGRMKTLDEIGNVFAVTKERVRQIEAKAIRKLRHPYRSEVLRGF 500          
The following BLAST results are available for this feature:
BLAST of Gcaud7887.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IIW3_9FLOR1.700e-21584.74RNA polymerase sigma factor SigA n=1 Tax=Gracilari... [more]
R7QJX2_CHOCR1.970e-18382.59RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A7S2ZBG5_9RHOD1.530e-14165.50Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
Q8S9D0_GUITH4.450e-13162.94RNA polymerase sigma factor n=1 Tax=Guillardia the... [more]
J7G2H9_9CRYP5.370e-13162.94RNA-polymerase sigma factor n=1 Tax=Chroomonas mes... [more]
A9BK56_HEMAN5.370e-13162.94RpoD n=1 Tax=Hemiselmis andersenii TaxID=464988 Re... [more]
Q98RZ3_GUITH1.370e-13061.32RNA-polymerase sigma factor n=2 Tax=Guillardia the... [more]
A0A5J4YY77_PORPP2.800e-13061.74RNA polymerase sigma factor SigA n=1 Tax=Porphyrid... [more]
A0A7S1TCA4_9RHOD7.180e-13062.30Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0ZI13_9RHOD1.140e-12661.86Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 303..315
score: 50.87
coord: 179..187
score: 78.71
coord: 324..339
score: 56.9
coord: 155..168
score: 67.47
coord: 339..350
score: 68.28
IPR000943RNA polymerase sigma-70PROSITEPS00716SIGMA70_2coord: 324..350
IPR009042RNA polymerase sigma-70 region 1.2PFAMPF00140Sigma70_r1_2coord: 54..79
e-value: 1.3E-5
score: 25.1
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 211..285
e-value: 3.3E-11
score: 43.1
NoneNo IPR availableGENE3D1.10.601.10RNA Polymerase Primary Sigma Factorcoord: 103..203
e-value: 2.0E-47
score: 164.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 15..363
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTICcoord: 15..363
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 293..351
e-value: 1.82115E-14
score: 65.2034
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 127..352
e-value: 1.1E-36
score: 123.9
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 301..352
e-value: 9.2E-20
score: 69.9
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 281..364
e-value: 3.4E-31
score: 108.8
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 204..280
e-value: 7.1E-13
score: 50.8
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 132..200
e-value: 7.3E-21
score: 73.7
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 265..362
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 204..278
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 50..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_465_length_24681_cov_4.375641contigNODE_465_length_24681_cov_4.375641:18266..19369 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7887.t1Gcaud7887.t1Gracilaria caudata M_176_S67 malemRNANODE_465_length_24681_cov_4.375641 18266..19369 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7887.t1 ID=Gcaud7887.t1|Name=Gcaud7887.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=368bp
MIAAPRRRGRPRTRRARVNTPSSPDSSAPPEKATNTAPNSPAPAHHHQNL
SDNTVRWYLQLIGTDRLLTAEEEVKYGRLVGLLMQWQRRRVALSDAIGRQ
PTDDEWADFVDVDRHTFRTQLSEARKAKDKMIVCNLRLVVSIAKRYLNRG
MPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRSIADQSR
TVRLPVHLYDTITAIRRATKYLTNELGRPPLEHEVAEYCNISVEKLRSTR
VNMQSAMPLDCPLANTDDALTLSDVIESNAESPEDRVESSLLRDDLEHVV
NSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRKL
RHPFRSAVLKAYTPPGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR009042RNA_pol_sigma70_r1_2
IPR007624RNA_pol_sigma70_r3
IPR014284RNA_pol_sigma-70_dom
IPR007630RNA_pol_sigma70_r4
IPR036388WH-like_DNA-bd_sf
IPR007627RNA_pol_sigma70_r2
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2