Gcaud7878.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7878.t1
Unique NameGcaud7878.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length248
Homology
BLAST of Gcaud7878.t1 vs. uniprot
Match: A0A2V3IY70_9FLOR (Vesicle transport protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY70_9FLOR)

HSP 1 Score: 372 bits (956), Expect = 8.980e-129
Identity = 195/235 (82.98%), Postives = 217/235 (92.34%), Query Frame = 0
Query:   13 MGLLEGLNSLQGAPLPAPSTSNTSNISNDPLSSFSASAKSLFGDLSNTLAPSLETLNDTAKQSVSSVRRLMTDDVPEDEEAPAQMTLSEEINTMFNLTMMQRIALFAMIFGTGVLLICMSFTFLPLIVVVPHKFAASFAMGNVLAITSTWVLVGPKAQLQNMFSPVRAAASAVYLFSLVFTLFAAFFGGKLRYLLVIVAIVAEVASLIWYALSYIPYGRHMISRLVGLMGISFGS 247
            MGLLEGLNSLQG PLPAPSTSNTS+ + DPLSS SASAKSLFGDLS+TLAPSLETLNDTAKQSV+SVRR ++D+   DEEAPAQ+TLSEEINTMFNLT  QR+ LF MIFGTGVLLIC+SF FLPLI+VVPHKFAASF MGN+LAI+STWVLVGPKAQLQNMF+PVRAAA+ +YLFSL F LFAAFFGGK RY+LVI+A+VAEVASL+WYALSYIPYGRHMISRLVG+MG+SFGS
Sbjct:    1 MGLLEGLNSLQGPPLPAPSTSNTSHSATDPLSSLSASAKSLFGDLSHTLAPSLETLNDTAKQSVNSVRRFISDEPEHDEEAPAQVTLSEEINTMFNLTTFQRVGLFVMIFGTGVLLICLSFAFLPLILVVPHKFAASFTMGNILAISSTWVLVGPKAQLQNMFNPVRAAAAGIYLFSLFFALFAAFFGGKFRYVLVIMALVAEVASLVWYALSYIPYGRHMISRLVGMMGVSFGS 235          
BLAST of Gcaud7878.t1 vs. uniprot
Match: R7QLF8_CHOCR (Vesicle transport protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLF8_CHOCR)

HSP 1 Score: 259 bits (662), Expect = 4.430e-84
Identity = 138/233 (59.23%), Postives = 177/233 (75.97%), Query Frame = 0
Query:   13 MGLLEGLNSLQGAPLPAPSTSNTSNISNDPLSSFSASAKSLFGDLSNTLAPSLETLNDTAKQSVSSVRRLMTD---DVPEDEEAPAQMTLSEEINTMFNLTMMQRIALFAMIFGTGVLLICMSFTFLPLIVVVPHKFAASFAMGNVLAITSTWVLVGPKAQLQNMFSPVRAAASAVYLFSLVFTLFAAFFGGKLRYLLVIVAIVAEVASLIWYALSYIPYGRHMISRLVGLMG 242
            MGLL+GL +LQGAP P+     +    ND ++  S  AKS FGD  +++   ++ L D  K SV+S+RR+M D   DV  + +   Q++ SEE+  MFNL+  QRIALFAM+FGTGVL++C+SF+FLP+IVVVPHKFAASF +GN+LAI STW+LVGP+AQLQ MF P RA A+ +YL SL   LFAAFFGGKLRY++V+VA+VAE+ SL+WYALSYIPYGRHM+SRL GL G
Sbjct:    1 MGLLDGLQTLQGAP-PSRDAGTSDPPLNDAMAHLSTGAKSFFGDFGSSIGDGVDNLGDGVKSSVNSLRRMMGDESVDVDVEMQTTQQISFSEEMGAMFNLSWFQRIALFAMVFGTGVLMMCISFSFLPVIVVVPHKFAASFTLGNLLAIFSTWILVGPRAQLQAMFHPARAVAAGIYLASLFIALFAAFFGGKLRYIIVLVAVVAEICSLVWYALSYIPYGRHMMSRLFGLFG 232          
BLAST of Gcaud7878.t1 vs. uniprot
Match: A0A7S3EM37_9RHOD (Vesicle transport protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EM37_9RHOD)

HSP 1 Score: 178 bits (451), Expect = 4.060e-52
Identity = 111/236 (47.03%), Postives = 148/236 (62.71%), Query Frame = 0
Query:   13 MGLLEGLNSLQGAPLPAPSTSNTSNISNDPLSSFSASAKSLFGDLSNTLAPSLETLNDTAKQSVSSVRRLMTDDV-PEDEEAPA------QMTLSEEINTMFNLTMMQRIALFAMIFGTGVLLICMSFTFLPLIVVVPHKFAASFAMGNVLAITSTWVLVGPKAQLQNMFSPVRAAASAVYLFSLVFTLFAAFFGGKLRYLLVIVAIVAEVASLIWYALSYIPYGRHMISRLVGLM 241
            MGLL+ +N+LQG  L        +    D LS F  +A    G++   L    E+   T K SV SVR  + DD  P D E+        Q T SEE+N + NLT  QR+ LF M F  G +++C++  F+PLIVV P KFA SF  GNVLA+ STW LVGP+AQL++MF P+RA A+A+Y+ SLV TL + F   ++RY LV+ AIV E  SL+WYA+SYIPYGR +IS+L+ L+
Sbjct:    1 MGLLDNINNLQG--LQGFQREGVA----DSLSDFQNAAMKSLGNVGEKLGDLGESAAGTLKGSVYSVRNFIGDDGGPSDIESNRKPEEFQQQTTSEELNEILNLTWTQRLILFLMTFAAGAIMMCLAVMFIPLIVVKPAKFALSFTFGNVLAVISTWFLVGPRAQLRSMFDPIRAWAAALYVGSLVVTLISIFINSRIRYFLVLAAIVVEAISLVWYAMSYIPYGRTVISKLLNLI 230          
BLAST of Gcaud7878.t1 vs. uniprot
Match: A0A1X6NU77_PORUM (Vesicle transport protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NU77_PORUM)

HSP 1 Score: 177 bits (448), Expect = 3.760e-51
Identity = 94/180 (52.22%), Postives = 131/180 (72.78%), Query Frame = 0
Query:   68 LNDTAKQSVSSVRRLM--TDDVPEDEEAPA-----QMTLSEEINTMFNLTMMQRIALFAMIFGTGVLLICMSFTFLPLIVVVPHKFAASFAMGNVLAITSTWVLVGPKAQLQNMFSPVRAAASAVYLFSLVFTLFAAFFGGKLRYLLVIVAIVAEVASLIWYALSYIPYGRHMISRLVGL 240
            +ND  +   ++V R++   D  P D EA A     Q ++ +EI  MFNL+ +QR+ LF M F  G ++I +SF FLP+I++ PHKFAA+F  GN+LAI STWV+VGP+AQL +MF P RA A+A Y+ SL+F LFAAFFGG+LRY LV++++V EV +L+WY+LSYIP+GR  +SRL G+
Sbjct:   97 VNDAFRGGWAAVSRMVGADDGAPIDVEACANGNGGQQSVQQEIGEMFNLSWVQRLTLFVMCFSAGAVMIGLSFMFLPMILLKPHKFAAAFTAGNLLAIMSTWVIVGPRAQLASMFHPARATAAAAYIGSLIFALFAAFFGGRLRYPLVLISLVVEVLALVWYSLSYIPFGRQALSRLTGI 276          
BLAST of Gcaud7878.t1 vs. uniprot
Match: A0A7S1TI78_9RHOD (Vesicle transport protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TI78_9RHOD)

HSP 1 Score: 154 bits (388), Expect = 2.170e-42
Identity = 79/151 (52.32%), Postives = 109/151 (72.19%), Query Frame = 0
Query:   91 EEAPAQMTLSEEINTMFNLTMMQRIALFAMIFGTGVLLICMSFTFLPLIVVVPHKFAASFAMGNVLAITSTWVLVGPKAQLQNMFSPVRAAASAVYLFSLVFTLFAAFFGGKLRYLLVIVAIVAEVASLIWYALSYIPYGRHMISRLVGLM 241
            E+ PA  + +EE+    ++++ QR+A FAM FG G  +  MS  FLP IV+ P KFA SF  GN+L I STW LVGP+AQLQ+MF P R  A++VY+ SL+FTL  AFFGG +RYLLV+++++ EV +L+WY LSY+PYGR ++ R  GL+
Sbjct:  106 EDIPAS-SWAEELGEFTSMSLTQRMAAFAMFFGAGGFMTFMSLLFLPTIVLHPAKFALSFTFGNLLCIASTWFLVGPRAQLQSMFDPSRRTAASVYVGSLLFTLIFAFFGGSMRYLLVLISVIIEVLALVWYTLSYVPYGRDILKRCCGLL 255          
BLAST of Gcaud7878.t1 vs. uniprot
Match: A0A5J4YSK3_PORPP (Vesicle transport protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSK3_PORPP)

HSP 1 Score: 144 bits (364), Expect = 4.480e-39
Identity = 75/145 (51.72%), Postives = 104/145 (71.72%), Query Frame = 0
Query:   96 QMTLSEEINTMFNLTMMQRIALFAMIFGTGVLLICMSFTFLPLIVVVPHKFAASFAMGNVLAITSTWVLVGPKAQLQNMFSPVRAAASAVYLFSLVFTLFAAFFGGKLRYLLVIVAIVAEVASLIWYALSYIPYGRHMISRLVGL 240
            Q +L +E++   N++  QR++LF M F  GV ++  +F +LP+IV+ P KF  +F  GNV+ ++ST  LVGPKAQL  MF PVRA A+  Y  ++ FTLFA F GG LRYL+V+VA++ EV +L+WYALSYIPYGR +IS L+ L
Sbjct:   91 QQSLHDEMSEYLNMSYTQRLSLFVMCFAGGVAMLFFAFMWLPMIVLKPAKFGLAFTFGNVMCVSSTVFLVGPKAQLSAMFHPVRAYAAYAYCGAIAFTLFACFNGGSLRYLMVLVALIVEVLALLWYALSYIPYGRQLISSLIPL 235          
BLAST of Gcaud7878.t1 vs. uniprot
Match: A0A7S3EKT4_9RHOD (Vesicle transport protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EKT4_9RHOD)

HSP 1 Score: 144 bits (362), Expect = 2.020e-38
Identity = 96/213 (45.07%), Postives = 127/213 (59.62%), Query Frame = 0
Query:   13 MGLLEGLNSLQGAPLPAPSTSNTSNISNDPLSSFSASAKSLFGDLSNTLAPSLETLNDTAKQSVSSVRRLMTDDV-PEDEEAPA------QMTLSEEINTMFNLTMMQRIALFAMIFGTGVLLICMSFTFLPLIVVVPHKFAASFAMGNVLAITSTWVLVGPKAQLQNMFSPVRAAASAVYLFSLVFTLFAAFFGGKLRYLLVIVAIVAEVAS 218
            MGLL+ +N+LQG  L        +    D LS F  +A    G++   L    E+   T K SV SVR  + DD  P D E+        Q T SEE+N + NLT  QR+ LF M F  G +++C++  F+PLIVV P KFA SF  GNVLA+ STW LVGP+AQL++MF P+RA A+A+Y+ SLV TL + F   ++RY LV+ AIV E  S
Sbjct:    1 MGLLDNINNLQG--LQGFQREGVA----DSLSDFQNAAMKSLGNVGEKLGDLGESAAGTLKGSVYSVRNFIGDDGGPSDIESNRKPEEFQQQTTSEELNEILNLTWTQRLILFLMTFAAGAIMMCLAVMFIPLIVVKPAKFALSFTFGNVLAVISTWFLVGPRAQLRSMFDPIRAWAAALYVGSLVVTLISIFINSRIRYFLVLAAIVVEAIS 207          
BLAST of Gcaud7878.t1 vs. uniprot
Match: A0A7S0T825_9RHOD (Vesicle transport protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T825_9RHOD)

HSP 1 Score: 122 bits (307), Expect = 7.350e-31
Identity = 66/147 (44.90%), Postives = 93/147 (63.27%), Query Frame = 0
Query:   92 EAPAQMTLSEEINTMFNLTMMQRIALFAMIFGTGVLLICMSFTFLPLIVVVPHKFAASFAMGNVLAITSTWVLVGPKAQLQNMFSPVRAAASAVYLFSLVFTLFAAFFGGKLRYLLVIVAIVAEVASLIWYALSYIPYGRHMISRLV 238
            E   Q  L +E+N + N+   QR+    + F  G  ++  S   LPLIV+ P KFA +F +GN+L + ST  LVGP AQ + MF PVRA+A+ VY  ++  TLF A F    +YLLV+ +++ E+ +L WYALSYIPYGR +IS +V
Sbjct:   58 EPSVQQDLYDEVNQVLNMPYWQRVLACGLCFAAGAAMLIFSSLLLPLIVLKPEKFALTFTLGNLLCVGSTCFLVGPSAQFEAMFHPVRASAAFVYFGAMASTLFCALFAKHGKYLLVLTSLLVELVALAWYALSYIPYGRALISTIV 204          
BLAST of Gcaud7878.t1 vs. uniprot
Match: L1J0I0_GUITC (Vesicle transport protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J0I0_GUITC)

HSP 1 Score: 107 bits (268), Expect = 9.130e-25
Identity = 67/164 (40.85%), Postives = 101/164 (61.59%), Query Frame = 0
Query:   71 TAKQSVSSVRRLMTDDVPEDEEAPAQMTLSEEINTMFNLTMMQRIALFAMIFGTGVLLICMSFTFLPLIVVVPHKFAASFAMGNVLAITSTWVLVGPKAQLQNMFSPVRAAASAVYLFSLVFTLFAAFFGGKLRYLLVIVAIVAEVASLIWYALSYIPYGRHMI 234
            T  Q   S++ L+T    E E      T+SE ++    L+  +R+  F +   +G+    +S   LPLIV+ PHKFA ++++GN+L + ST  LVGPK Q QNM++  RA AS  Y  S+V T++AA   G   Y+LVI+ +  + A+LIWY+LSYIP+GR+M+
Sbjct:   78 TVSQQAESMKTLITGQQKEPE------TVSEYVDEAMTLSYKKRLIGFGICLLSGIFFTFLSTLMLPLIVIKPHKFAVAYSLGNLLMMLSTIFLVGPKKQCQNMWTGHRAMASIAYFGSMVGTIYAAM--GLRIYILVIIFVGIQFAALIWYSLSYIPFGRYML 233          
BLAST of Gcaud7878.t1 vs. uniprot
Match: A0A443PHQ8_9MAGN (Vesicle transport protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PHQ8_9MAGN)

HSP 1 Score: 103 bits (257), Expect = 6.630e-24
Identity = 65/170 (38.24%), Postives = 101/170 (59.41%), Query Frame = 0
Query:   70 DTAKQSVSSVRRLMTDDVPEDEEAPAQMTLSEEINTMFNLTMMQRIALFAMIFGTGVLLICMSFTFLPLIVVV-PHKFAASFAMGNVLAITSTWVLVGPKAQLQNMFSPVRAAASAVYLFSLVFTLFAAFFGGKLRYLLVIVAIVAEVASLIWYALSYIPYGRHMISRLV 238
            D   +++  ++ L+  DV ++EEA A+ +L ++ N    LTM QR+  FA     G     +S T L ++V   P KF  +F  GN+LA+ ST  L+GPK Q+  M  PVR  A+A+Y+ S++  LF AF+      LL ++AI  E  +L+WY LSYIP+ R M+S+++
Sbjct:    2 DKMNKAMEKMKILVGMDVDDEEEAVAESSLIDDFNRQCTLTMKQRLFGFATCLVAG-----LSCTLLSMLVFFNPIKFGITFTFGNLLALGSTAFLIGPKRQVTMMLDPVRIYATAIYIASMIIALFCAFYVHNK--LLTLLAITLEFGALVWYGLSYIPFARSMVSKIM 164          
The following BLAST results are available for this feature:
BLAST of Gcaud7878.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IY70_9FLOR8.980e-12982.98Vesicle transport protein n=1 Tax=Gracilariopsis c... [more]
R7QLF8_CHOCR4.430e-8459.23Vesicle transport protein n=1 Tax=Chondrus crispus... [more]
A0A7S3EM37_9RHOD4.060e-5247.03Vesicle transport protein n=1 Tax=Rhodosorus marin... [more]
A0A1X6NU77_PORUM3.760e-5152.22Vesicle transport protein n=1 Tax=Porphyra umbilic... [more]
A0A7S1TI78_9RHOD2.170e-4252.32Vesicle transport protein n=1 Tax=Compsopogon caer... [more]
A0A5J4YSK3_PORPP4.480e-3951.72Vesicle transport protein n=1 Tax=Porphyridium pur... [more]
A0A7S3EKT4_9RHOD2.020e-3845.07Vesicle transport protein n=1 Tax=Rhodosorus marin... [more]
A0A7S0T825_9RHOD7.350e-3144.90Vesicle transport protein n=1 Tax=Erythrolobus mad... [more]
L1J0I0_GUITC9.130e-2540.85Vesicle transport protein n=1 Tax=Guillardia theta... [more]
A0A443PHQ8_9MAGN6.630e-2438.24Vesicle transport protein n=1 Tax=Cinnamomum micra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007305Vesicle transport protein, Got1/SFT2-likePFAMPF04178Got1coord: 116..228
e-value: 5.4E-25
score: 88.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availablePANTHERPTHR23137:SF6VESICLE TRANSPORT PROTEINcoord: 76..238
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 228..247
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 200..204
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 166..176
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 177..199
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 205..227
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 115..140
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 141..145
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 146..165
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..114
NoneNo IPR availableTMHMMTMhelixcoord: 205..227
NoneNo IPR availableTMHMMTMhelixcoord: 178..200
NoneNo IPR availableTMHMMTMhelixcoord: 115..137
NoneNo IPR availableTMHMMTMhelixcoord: 147..166
IPR011691Vesicle transport protein SFT2PANTHERPTHR23137UNCHARACTERIZEDcoord: 76..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1714_length_8869_cov_3.836523contigNODE_1714_length_8869_cov_3.836523:7512..8361 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7878.t1Gcaud7878.t1Gracilaria caudata M_176_S67 malemRNANODE_1714_length_8869_cov_3.836523 7512..8361 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7878.t1 ID=Gcaud7878.t1|Name=Gcaud7878.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=248bp
MLKLRPNRSTSQMGLLEGLNSLQGAPLPAPSTSNTSNISNDPLSSFSASA
KSLFGDLSNTLAPSLETLNDTAKQSVSSVRRLMTDDVPEDEEAPAQMTLS
EEINTMFNLTMMQRIALFAMIFGTGVLLICMSFTFLPLIVVVPHKFAASF
AMGNVLAITSTWVLVGPKAQLQNMFSPVRAAASAVYLFSLVFTLFAAFFG
GKLRYLLVIVAIVAEVASLIWYALSYIPYGRHMISRLVGLMGISFGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007305Vesicle_transpt_Got1/SFT2
IPR011691Vesicle_transpt_SFT2