Gcaud785.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud785.t1
Unique NameGcaud785.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length146
Homology
[Close]
BLAST of Gcaud785.t1 vs. uniprot
Match: A0A2V3J2Q0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2Q0_9FLOR)

HSP 1 Score: 137 bits (345), Expect = 6.320e-36
Identity = 77/144 (53.47%), Postives = 106/144 (73.61%), Query Frame = 0 
Query:    1 MKYGVFVNIGVKRDGLIHFSRMPEKHRTDWKEFKEGMEVCVEVTDIIDDQIALALVGVADEMLKEALEMISSATARVEDVQRAREVIASLRNPRQRSKQGREAQQNEIVTQRSSEEDLVGKTAENEDSEEI-EKFSDEYFEDKY 143
            +KYGVFV+IGVKR+GLIH+SRM ++H+ DWKEF+ G+E+ VEV DI+DD+++L+LV V DE+L E  +   SATARV DV +A+E+ + LR  R +SK   + Q +    +  S+ED   K  ENED E++ EKFSDEY+EDKY
Sbjct:  288 LKYGVFVDIGVKREGLIHYSRMTDRHKWDWKEFEAGLELYVEVHDIVDDRLSLSLVEVKDEILSEVTDRAKSATARVHDVLKAKELKSLLR--RSKSKLKSKKQASSRTGEDVSKEDESRKALENEDEEDVVEKFSDEYYEDKY 429
[Close]
BLAST of Gcaud785.t1 vs. uniprot
Match: R7QNX0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNX0_CHOCR)

HSP 1 Score: 85.9 bits (211), Expect = 7.650e-17
Identity = 61/153 (39.87%), Postives = 89/153 (58.17%), Query Frame = 0 
Query:    1 MKYGVFVNIGVKRDGLIHFSRMPEKHRTDWKE-FKEGMEVCVEVTDIIDDQIALALVGVADEMLKEALEMIS---SATARVEDVQRAREVIASLRNPRQRSK--QGREAQQN---EIVTQRSSEEDLVGKTAENEDSEE-IEKFSDEYFEDKY 143
            +K+G+FV+ GVK DGLIH+S M + HR+DWKE    G +V  EV  + +++I L L+ + DE + E +   S   SA AR  DV+RA ++  S  +    S   Q   A+ +   +I+   +   D V    E +D +E +EKFSDEYFEDKY
Sbjct:  297 VKFGLFVDFGVKTDGLIHYSEMGDLHRSDWKEVINIGDQVTTEVLSVAENRIGLRLLYLGDEEIAEKIAAESHAASALARSSDVERATQLKTSSGSSSTGSVHVQVNSAESDSSADILNDNNKSPDDVANVEEEDDEDEGVEKFSDEYFEDKY 449
The following BLAST results are available for this feature:
BLAST of Gcaud785.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J2Q0_9FLOR6.320e-3653.47Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QNX0_CHOCR7.650e-1739.87Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 63..83
NoneNo IPR availableGENE3D2.40.50.140coord: 1..62
e-value: 1.5E-8
score: 36.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..134
IPR003029S1 domainPFAMPF00575S1coord: 1..49
e-value: 4.9E-6
score: 26.8
IPR003029S1 domainPROSITEPS50126S1coord: 1..56
score: 9.941765
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6618_length_1125_cov_6.313346contigNODE_6618_length_1125_cov_6.313346:160..597 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud785.t1Gcaud785.t1Gracilaria caudata M_176_S67 malemRNANODE_6618_length_1125_cov_6.313346 160..597 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud785.t1 ID=Gcaud785.t1|Name=Gcaud785.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=146bp
MKYGVFVNIGVKRDGLIHFSRMPEKHRTDWKEFKEGMEVCVEVTDIIDDQ
IALALVGVADEMLKEALEMISSATARVEDVQRAREVIASLRNPRQRSKQG
REAQQNEIVTQRSSEEDLVGKTAENEDSEEIEKFSDEYFEDKYDL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003029S1_domain
IPR012340NA-bd_OB-fold