Gcaud7846.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7846.t1
Unique NameGcaud7846.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length73
Homology
BLAST of Gcaud7846.t1 vs. uniprot
Match: A0A2V3IZ50_9FLOR (Ribosome maturation protein SBDS n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ50_9FLOR)

HSP 1 Score: 107 bits (266), Expect = 5.890e-27
Identity = 51/71 (71.83%), Postives = 63/71 (88.73%), Query Frame = 0
Query:    2 RELQQHMPISRAQMRLQLSIPVSRAKAVKEKFKPHVKTWEQEEWEPDYEGTILVDPGSFQVIDDVLREETK 72
            ++LQ+HM ISRAQMRLQL++P +RAKAVKE+ K HV  WEQEEWE DY GT+L+DPGSF+VIDDVLR+ET+
Sbjct:  160 KQLQEHMSISRAQMRLQLNLPSARAKAVKEQLKTHVNKWEQEEWEMDYVGTVLIDPGSFRVIDDVLRQETR 230          
BLAST of Gcaud7846.t1 vs. uniprot
Match: R7QJF2_CHOCR (Ribosome maturation protein SBDS n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJF2_CHOCR)

HSP 1 Score: 99.8 bits (247), Expect = 3.990e-24
Identity = 44/71 (61.97%), Postives = 61/71 (85.92%), Query Frame = 0
Query:    2 RELQQHMPISRAQMRLQLSIPVSRAKAVKEKFKPHVKTWEQEEWEPDYEGTILVDPGSFQVIDDVLREETK 72
            ++LQ+HM ISRAQMRLQ+S+P S+ KAV+EK + HV+ WEQEEW+PD++ T+LVDPG F++ID+ LRE T+
Sbjct:  160 KQLQEHMSISRAQMRLQISVPSSKGKAVREKLREHVQQWEQEEWDPDFQATVLVDPGCFRIIDETLREATR 230          
BLAST of Gcaud7846.t1 vs. uniprot
Match: A0A6I9NT72_9TELE (ribosome maturation protein SBDS n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9NT72_9TELE)

HSP 1 Score: 63.5 bits (153), Expect = 1.800e-11
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 0
Query:    2 RELQQHMPISRAQMRLQLSIPVSRAKAVKEKFKPHVKTWEQEEWEPDYEGTILVDPGSFQVIDDVLREETK 72
            R+L++ M I RA MRL+L +P   AK +KEK KP ++  E E+++ + E  +LVDPG F+ ID+++R ETK
Sbjct:   11 RQLKESMEIQRAHMRLRLVLPAKEAKRLKEKLKPLLQVVESEDFDEELEMVVLVDPGCFREIDELIRCETK 81          
BLAST of Gcaud7846.t1 vs. uniprot
Match: A0A0S7KK89_9TELE (Ribosome maturation protein SBDS (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KK89_9TELE)

HSP 1 Score: 64.7 bits (156), Expect = 6.360e-11
Identity = 33/71 (46.48%), Postives = 51/71 (71.83%), Query Frame = 0
Query:    2 RELQQHMPISRAQMRLQLSIPVSRAKAVKEKFKPHVKTWEQEEWEPDYEGTILVDPGSFQVIDDVLREETK 72
            R+L++ M I RA MRL+L++P   AK ++EK KP ++  E EE++ + E  +LVDPG F+ ID+++R ETK
Sbjct:  133 RQLKETMEIQRAHMRLRLAVPAKEAKRLREKLKPLLQVVESEEFDDELEMVVLVDPGCFREIDELIRCETK 203          
BLAST of Gcaud7846.t1 vs. uniprot
Match: UPI0001CBA9C6 (ribosome maturation protein SBDS-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA9C6)

HSP 1 Score: 63.9 bits (154), Expect = 1.700e-10
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 0
Query:    8 MPISRAQMRLQLSIPVSRAKAVKEKFKPHVKTWEQEEWEPDYEGTILVDPGSFQVIDDVLREETK 72
            M I RAQMR+++ +P   AK VK+K  P +KT E EEW+ D E  +L+DPG F+ +DD+++  T+
Sbjct:  167 MKIDRAQMRIKIRLPKKEAKKVKDKLTPLIKTIEHEEWDGDLEMVLLIDPGCFREMDDLVKSTTR 231          
BLAST of Gcaud7846.t1 vs. uniprot
Match: A0A3B3ZKN4_9GOBI (Ribosome maturation protein SBDS n=130 Tax=Neopterygii TaxID=41665 RepID=A0A3B3ZKN4_9GOBI)

HSP 1 Score: 58.9 bits (141), Expect = 1.190e-8
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 0
Query:    2 RELQQHMPISRAQMRLQLSIPVSRAKAVKEKFKPHVKTWEQEEWEPDYEGTILVDPGSFQVIDDVLREETK 72
            R+L++ M I RA MRL+L +P   AK +KEK K  ++  E E+++ + E  +LVDPG ++ ID+++R ETK
Sbjct:  159 RQLKETMEIQRAHMRLRLVLPAKEAKRLKEKLKTLLQVVESEDFDEELEMVVLVDPGCYREIDELIRCETK 229          
BLAST of Gcaud7846.t1 vs. uniprot
Match: A0A1Y1W0Q6_9FUNG (Shwachman-Bodian-diamond syndrome protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W0Q6_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 2.350e-8
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    8 MPISRAQMRLQLSIPVSRAKAVKEKFKPHVKTWEQEEWEPDYEGTILVDPGSFQVIDDVLREETK 72
            MPISRA+MR+++++P   AK +K+K  P V   E+E+   +YE   L+DPG F+ I D+L+ E K
Sbjct:  168 MPISRARMRIRVTMPSKEAKRIKDKLSPLVAETEEEDISEEYELIALIDPGQFRAISDLLQAECK 232          
BLAST of Gcaud7846.t1 vs. uniprot
Match: A0A397UGK6_9GLOM (Uncharacterized protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UGK6_9GLOM)

HSP 1 Score: 57.4 bits (137), Expect = 4.480e-8
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 0
Query:    8 MPISRAQMRLQLSIPVSR-AKAVKEKFKPHVKTWEQEEWEPDYEGTILVDPGSFQVIDDVLREETK 72
            +PISRAQMRL++++P S+  K  KEK  P + + E E W+ +YE   L+DPG ++ I D+L ++ K
Sbjct:  167 IPISRAQMRLRITMPNSKETKKAKEKLTPLIASIEDENWDNEYELICLIDPGQYRTIGDILEKDIK 232          
BLAST of Gcaud7846.t1 vs. uniprot
Match: A0A151Z6X7_9MYCE (Shwachman-Bodian-Diamond syndrome protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z6X7_9MYCE)

HSP 1 Score: 56.2 bits (134), Expect = 1.440e-7
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 0
Query:    2 RELQQHMPISRAQMRLQLSIPVSRAKAV-KEKFKPHVKTWEQEEWEPDYEGTILVDPGSFQVIDDVLREETK 72
            R++   +PI RAQMRL ++IP   AK+  K+K KP++   E E+ E       LVDPGSF+ ID++++ ETK
Sbjct:  159 RQISSIIPIQRAQMRLNITIPAKEAKSFNKDKLKPYIAQIEDEDNENGISILCLVDPGSFRKIDELVKNETK 230          
BLAST of Gcaud7846.t1 vs. uniprot
Match: K1QWS3_CRAGI (Ribosome maturation protein SBDS n=2 Tax=Crassostrea TaxID=6564 RepID=K1QWS3_CRAGI)

HSP 1 Score: 55.5 bits (132), Expect = 2.260e-7
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0
Query:   10 ISRAQMRLQLSIPVSRAKAVKEKFKPHVKTWEQEEWEPDYEGTILVDPGSFQVIDDVLREETK 72
            I RA MR+++++P    K VK+K K      E+E++ PD E  ILVDPG F+ IDD++R +TK
Sbjct:  169 IQRALMRIRITVPGKDGKKVKDKLKKLAAKVEEEDFSPDLEMVILVDPGCFREIDDLVRADTK 231          
The following BLAST results are available for this feature:
BLAST of Gcaud7846.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A2V3IZ50_9FLOR5.890e-2771.83Ribosome maturation protein SBDS n=1 Tax=Gracilari... [more]
R7QJF2_CHOCR3.990e-2461.97Ribosome maturation protein SBDS n=1 Tax=Chondrus ... [more]
A0A6I9NT72_9TELE1.800e-1146.48ribosome maturation protein SBDS n=1 Tax=Nototheni... [more]
A0A0S7KK89_9TELE6.360e-1146.48Ribosome maturation protein SBDS (Fragment) n=1 Ta... [more]
UPI0001CBA9C61.700e-1046.15ribosome maturation protein SBDS-like n=1 Tax=Sacc... [more]
A0A3B3ZKN4_9GOBI1.190e-843.66Ribosome maturation protein SBDS n=130 Tax=Neopter... [more]
A0A1Y1W0Q6_9FUNG2.350e-844.62Shwachman-Bodian-diamond syndrome protein n=1 Tax=... [more]
A0A397UGK6_9GLOM4.480e-843.94Uncharacterized protein n=2 Tax=Gigaspora TaxID=48... [more]
A0A151Z6X7_9MYCE1.440e-744.44Shwachman-Bodian-Diamond syndrome protein n=1 Tax=... [more]
K1QWS3_CRAGI2.260e-746.03Ribosome maturation protein SBDS n=2 Tax=Crassostr... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018978Ribosome maturation protein Sdo1/SBDS, C-terminalPFAMPF09377SBDS_Ccoord: 2..67
e-value: 6.0E-10
score: 39.1
NoneNo IPR availableGENE3D3.30.70.240coord: 14..72
e-value: 1.2E-15
score: 59.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4524_length_2201_cov_4.999526contigNODE_4524_length_2201_cov_4.999526:2..218 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7846.t1Gcaud7846.t1Gracilaria caudata M_176_S67 malemRNANODE_4524_length_2201_cov_4.999526 2..218 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7846.t1 ID=Gcaud7846.t1|Name=Gcaud7846.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=73bp
XRELQQHMPISRAQMRLQLSIPVSRAKAVKEKFKPHVKTWEQEEWEPDYE
GTILVDPGSFQVIDDVLREETK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018978Ribosome_mat_Sdo1/SBDS_C