Gcaud7844.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7844.t1
Unique NameGcaud7844.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length229
Homology
BLAST of Gcaud7844.t1 vs. uniprot
Match: A0A2V3IYX5_9FLOR (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYX5_9FLOR)

HSP 1 Score: 290 bits (741), Expect = 2.240e-95
Identity = 142/227 (62.56%), Postives = 182/227 (80.18%), Query Frame = 0
Query:    2 LLRISEMLHETNSQYNLTGIRTRHGIIVKHLIDALTLLPVLDREAPKAIVDVGTGAGFPGLVLAVSRPHWSLTLLDSVRKKLAFHEQVVDELSLQNVHSEWGRAEERAQSSLRQKFCVAVARSVAEMRVLAELTLPFVRVGGCVIAQKSVDSQLEEISDAENSIRVCGGRIEEIITPWQSDWKELLEGGDEALDKDLDAKRVVLVRKEKPTPSRYPRKPGIPKKSPL 228
            LL++SE LH TNS YNLTGIRTRHGII KHLIDALTLLP LD +AP  IVDVGTGAGFPGLV+A+SRP WS+TL+DSVRKK++FHEQ++ +  L+NV S WGRAE  A+  LR+ FC+AVARSVAEMRVLAELTLP V+VGG V+AQK+VD+Q +E+  AENSIR+CGG++  ++  W S   E +   D     DL + ++++V+KE+ TP++YPR+ G+PKK+PL
Sbjct:   78 LLKLSETLHRTNSLYNLTGIRTRHGIIAKHLIDALTLLPFLDEQAPNRIVDVGTGAGFPGLVIAISRPEWSMTLVDSVRKKVSFHEQIISDFGLRNVQSVWGRAEHIAKGQLRESFCIAVARSVAEMRVLAELTLPLVQVGGYVMAQKTVDAQHKELIAAENSIRLCGGQLLHVLDAWPSRGVEFVSAQDLPPLADLASNKIIVVKKERRTPAKYPRRAGVPKKTPL 304          
BLAST of Gcaud7844.t1 vs. uniprot
Match: R7Q7F0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7F0_CHOCR)

HSP 1 Score: 207 bits (526), Expect = 3.960e-63
Identity = 116/233 (49.79%), Postives = 155/233 (66.52%), Query Frame = 0
Query:    2 LLRISEMLHETNSQYNLTGIRTRHGIIVKHLIDALTLLPVLDREAPKA-----IVDVGTGAGFPGLVLAVSRPHWSLTLLDSVRKKLAFHEQVVDELSLQNVHSEWGRAEERAQSSL-RQKFCVAVARSVAEMRVLAELTLPFVRVGGCVIAQKSVDSQLEEISDAENSIRVCGGRIEEIITPWQSDWKELLEGGDEALDKDLDAKRVVLVRKEKPTPSRYPRKPGIPKKSPL 228
            L+R++++L   + +YNLT IRTR  +++KH++DAL+LLP LD EA  A     +VDVGTGAGFPGLVLA++RP W +TLL++ RKK  FH+ V  EL+L NV S WGRAEE  QS + R ++   VARS+AEMRV  EL +P  +VGG + AQKSV +  EEI+ A+ +IR  GG++E                G+E  D D   K +V VRK K TP  +PR PG+PKK+PL
Sbjct:   63 LVRLTDLLLSESKRYNLTAIRTRDAVLLKHVVDALSLLPALDAEAAAAATGLLVVDVGTGAGFPGLVLAIARPQWDVTLLEAARKKTRFHDLVERELALPNVSSVWGRAEEVGQSKMHRGRYDAVVARSLAEMRVCCELCVPLAKVGGALFAQKSVGAGAEEIAAAKEAIRRLGGKLES-------------GQGEETEDVDGRKKCIVAVRKVKATPRAFPRLPGVPKKTPL 282          
BLAST of Gcaud7844.t1 vs. uniprot
Match: R7QSX2_CHOCR (Uncharacterized protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QSX2_CHOCR)

HSP 1 Score: 200 bits (508), Expect = 2.600e-60
Identity = 114/233 (48.93%), Postives = 154/233 (66.09%), Query Frame = 0
Query:    2 LLRISEMLHETNSQYNLTGIRTRHGIIVKHLIDALTLLPVLDREAPKA-----IVDVGTGAGFPGLVLAVSRPHWSLTLLDSVRKKLAFHEQVVDELSLQNVHSEWGRAEERAQSSL-RQKFCVAVARSVAEMRVLAELTLPFVRVGGCVIAQKSVDSQLEEISDAENSIRVCGGRIEEIITPWQSDWKELLEGGDEALDKDLDAKRVVLVRKEKPTPSRYPRKPGIPKKSPL 228
            L+R++++L   + +YNLT IRTR  +++KH++DAL+LL VLD EA  A     +VDVGTGAGFPGLVLA++RP W +TLL++ RKK  FH+ V  EL+L+NV S WGRAEE  QS + R ++   VARS+AEMRV  EL +P  +VGG   AQKSV +  EEI+ A+ +IR  GG++E+                  A + D   K +V VRK K TP  +PR PG+PKK+PL
Sbjct:   72 LVRLADLLLSESKRYNLTAIRTRDTVLLKHIVDALSLLQVLDAEAAAAPGALRVVDVGTGAGFPGLVLAIARPQWDVTLLEAARKKTRFHDIVERELALRNVTSVWGRAEEVGQSKMHRGRYDAVVARSLAEMRVCCELCVPLAKVGGVFFAQKSVGAGAEEIAAAKEAIRRLGGKLED------------------AEEIDRRKKCIVAVRKVKATPRAFPRLPGVPKKTPL 286          
BLAST of Gcaud7844.t1 vs. uniprot
Match: R7QRY1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRY1_CHOCR)

HSP 1 Score: 207 bits (527), Expect = 1.820e-59
Identity = 115/221 (52.04%), Postives = 151/221 (68.33%), Query Frame = 0
Query:   15 QYNLTGIRTRHGIIVKHLIDALTLLPVLDREAPKA-----IVDVGTGAGFPGLVLAVSRPHWSLTLLDSVRKKLAFHEQVVDELSLQNVHSEWGRAEERAQSSL-RQKFCVAVARSVAEMRVLAELTLPFVRVGGCVIAQKSVDSQLEEISDAENSIRVCGGRIEEIITPWQSDWKELLEG-GDEALDKDLDAKRVVLVRKEKPTPSRYPRKPGIPKKSPL 228
            QYNLT IRTR  +++KH++DAL+LLP LD EA  A     +VD GTGAGFPGLVLA++RP W +TLL++ RKK  FH+ V  EL+L NV S WGRAEE  QS + R ++   VARS+AEMRV  EL +P  +VGG + AQKSV +  EEI+ A+ +IR  GG++E +   W  +W   ++G G+E  D D   K +V VRK K TP  + R PG+PKK+PL
Sbjct:  449 QYNLTAIRTRDAVLLKHVVDALSLLPALDAEAAAAATGLRVVDFGTGAGFPGLVLAIARPQWDVTLLEAARKKTRFHDLVERELALPNVSSVWGRAEEVGQSKMHRGRYDAVVARSLAEMRVCCELCVPLAKVGGALFAQKSVGAGAEEIAAAKEAIRRLGGKLESVREAWPWEW---MQGQGEETEDVDGRKKCIVAVRKVKATPRAFLRLPGVPKKTPL 666          
BLAST of Gcaud7844.t1 vs. uniprot
Match: UPI001E1DB23A (ribosomal RNA small subunit methyltransferase G-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB23A)

HSP 1 Score: 183 bits (464), Expect = 9.750e-54
Identity = 109/232 (46.98%), Postives = 146/232 (62.93%), Query Frame = 0
Query:    2 LLRISEMLHETNSQYNLTGIRTRHGIIVKHLIDALTLLPVLDREAPKAIVDVGTGAGFPGLVLAVSRPHWSLTLLDSVRKKLAFHEQVVDELSLQNVHSEWGRAEERAQ-SSLRQKFCVAVARSVAEMRVLAELTLPFVRVGGCVIAQKSVDSQLE--EISDAENSIRVCGGRIEEIITPWQSDWKELLEGGDEALD-KDLDAKR-VVLVRKEKPTPSRYPRKPGIPKKSPL 228
            L R+ + + E N   NLT +RT  G+IV+HL+D L LLP L+      IVD+G+GAG PGLVLAV RP W++TL+++ RKK  FHEQ + +L L NV + WGRAE+    SS R+++    AR+VAEMRVLAEL LP +RVGG ++AQKS++      E+  A+N+I V GG    +   W    K + +   EA D  D D +R +V VRK   T  RYPR  G P+K PL
Sbjct:   57 LRRLGDTILEANHHLNLTAVRTVEGMIVRHLVDGLGLLPALEDMQHMNIVDIGSGAGLPGLVLAVCRPGWNITLVEAARKKTRFHEQAIADLGLCNVQAVWGRAEDLGHDSSHRERYDCVCARAVAEMRVLAELALPLIRVGGSLVAQKSIERNGPHMELRAADNAIEVLGGEWAAVEYAWTD--KAIQQFLPEAADASDGDRRRAIVTVRKVMSTSPRYPRTSGTPRKHPL 286          
BLAST of Gcaud7844.t1 vs. uniprot
Match: G8NCW0_9DEIN (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Thermus sp. CCB_US3_UF1 TaxID=1111069 RepID=G8NCW0_9DEIN)

HSP 1 Score: 168 bits (426), Expect = 1.400e-48
Identity = 96/225 (42.67%), Postives = 138/225 (61.33%), Query Frame = 0
Query:    4 RISEMLHETNSQYNLTGIRTRHGIIVKHLIDALTLLPVLDREAPKAIVDVGTGAGFPGLVLAVSRPHWSLTLLDSVRKKLAFHEQVVDELSLQNVHSEWGRAEERAQSSLRQKFCVAVARSVAEMRVLAELTLPFVRVGGCVIAQKSVDSQLEEISDAENSIRVCGGRIEEIITPWQSDWKELLEGGDEALDKDLDAKRVVLVRKEKPTPSRYPRKPGIPKKSPL 228
            R+ E+L E N + NLT +RT   ++VKH +D+LTLL +   E P  ++D+GTGAGFPGL L + RP   +TLLD+ RKK+AF  + V  L L+  H  WGRAE  A    R+ +   VAR+VA + VLAEL LPF+ VGG ++AQK    + EE++    ++ + GGR+E +                 +L    + + +V++ KE PTP+RYPR+PGIP+K PL
Sbjct:   31 RLYELLMEANRRVNLTALRTEREVVVKHFLDSLTLLTLPLWEGPLRVLDLGTGAGFPGLPLKIVRPDLEITLLDATRKKVAFVAEAVAALGLKGAHPLWGRAEALAHGEHREAYARVVARAVAPLCVLAELGLPFLAVGGRMVAQKGPRVE-EELAPLPRALALLGGRLEGV--------------HPHSLPLLGEVRNLVVLGKEAPTPTRYPRRPGIPEKHPL 240          
BLAST of Gcaud7844.t1 vs. uniprot
Match: A0A8J2VF76_9BACL (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Marinithermofilum abyssi TaxID=1571185 RepID=A0A8J2VF76_9BACL)

HSP 1 Score: 163 bits (413), Expect = 1.160e-46
Identity = 98/227 (43.17%), Postives = 141/227 (62.11%), Query Frame = 0
Query:    4 RISEMLHETNSQYNLTGIRTRHGIIVKHLIDALTLLPVLDREAPKAIVDVGTGAGFPGLVLAVSRPHWSLTLLDSVRKKLAFHEQVVDELSLQNVHSEWGRAEERA-QSSLRQKFCVAVARSVAEMRVLAELTLPFVRVGGCVIAQKSVDSQLEEISDAENSI-RVCGGRIEEIITPWQSDWKELLEGGDEALDKDLDAKRVVLVRKEKPTPSRYPRKPGIPKKSPL 228
            R  E L E N   NLT I   + + +KH  D+LTL P+L  E+ ++++DVGTGAGFPG+ L ++ PH  LTLLDS+ K++ F +++ ++L L+ V +   RAEE   Q   R+ F VA AR+VA + VL+E  +PFVRVGG   A K     LEEIS+A+++I R+ GG I +          ELL     +L +    + ++LV+K +PTP +YPR+PGIP K PL
Sbjct:   28 RYYERLVEVNKTMNLTAITEENDVYIKHFYDSLTLAPLLPAESIQSLIDVGTGAGFPGIPLKIAFPHIRLTLLDSLNKRVTFLKELAEDLGLEGVEAVHRRAEEAGRQPRFRESFDVATARAVARLNVLSEYCMPFVRVGGIFAAMKGA-GVLEEISEAQSAISRLGGGSIRD----------ELL-----SLPEGKGDRHILLVQKNQPTPKKYPRRPGIPAKQPL 238          
BLAST of Gcaud7844.t1 vs. uniprot
Match: A0A7C3DN06_MEIRU (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Meiothermus ruber TaxID=277 RepID=A0A7C3DN06_MEIRU)

HSP 1 Score: 163 bits (412), Expect = 1.830e-46
Identity = 93/226 (41.15%), Postives = 138/226 (61.06%), Query Frame = 0
Query:    4 RISEMLHETNSQYNLTGIRTRHGIIVKHLIDALTLLPVLDREAPKAIVDVGTGAGFPGLVLAVSRPHWSLTLLDSVRKKLAFHEQVVDELSLQNVHSEWGRAEERAQSSL-RQKFCVAVARSVAEMRVLAELTLPFVRVGGCVIAQKSVDSQLEEISDAENSIRVCGGRIEEIITPWQSDWKELLEGGDEALDKDLDAKRVVLVRKEKPTPSRYPRKPGIPKKSPL 228
            ++ E+L E N   NLT IR   GII+KH +D+LT L         +++DVGTGAGFPGL LA+ RP     LLD+ +KK+ F  + +  L LQN  + WGR+EE A  ++ R+ +  A++R+V+ +  +AELTLP VRVGG V+ QK  + + +EI+ A  ++R  GG I++I+          LE     L    +A+ ++++RK   TP  YPRKPG+P K+PL
Sbjct:   31 KLFELLTEVNQTTNLTAIRDEQGIILKHFVDSLTCLTYPGLLEAMSVIDVGTGAGFPGLPLAIVRPDTHFDLLDATKKKIEFVARAIQTLGLQNARALWGRSEELAHENVKRETYGAALSRAVSSLATVAELTLPLVRVGGFVLVQKGANVE-QEIAGARGALRKLGGEIDQILR---------LE-----LPVSKEARNLIILRKVAATPPAYPRKPGVPAKNPL 241          
BLAST of Gcaud7844.t1 vs. uniprot
Match: UPI0005712526 (16S rRNA (guanine(527)-N(7))-methyltransferase RsmG n=1 Tax=Thermus amyloliquefaciens TaxID=1449080 RepID=UPI0005712526)

HSP 1 Score: 161 bits (407), Expect = 1.030e-45
Identity = 95/226 (42.04%), Postives = 136/226 (60.18%), Query Frame = 0
Query:    4 RISEMLHETNSQYNLTGIRTRHGIIVKHLIDALTLLPVLDREAPKAIVDVGTGAGFPGLVLAVSRPHWSLTLLDSVRKKLAFHEQVVDELSLQNVHSEWGRAEERAQ-SSLRQKFCVAVARSVAEMRVLAELTLPFVRVGGCVIAQKSVDSQLEEISDAENSIRVCGGRIEEIITPWQSDWKELLEGGDEALDKDLDAKRVVLVRKEKPTPSRYPRKPGIPKKSPL 228
            R+ ++L E N + NLT +RT   ++VKH +D+LTLL +   E P  ++D+GTGAGFPGL L + RP   +TLLD+ +KK+AF  Q V+ L L+  H  WGRAEE A     R+ +   VAR+VA + VLAEL LPFV +GG ++AQK     +EE+     ++ + GG    + T                L    + + +V++ KE PTPSRYPR+PG+P K+PL
Sbjct:   31 RLHDLLVEANRRTNLTALRTEEEVVVKHFLDSLTLLALPLWEGPLRVLDLGTGAGFPGLPLKIVRPELEVTLLDATKKKVAFVAQAVEALGLKGAHPLWGRAEELAHLPQHREAYGRVVARAVAPLCVLAELGLPFVALGGYMVAQKG-PRVVEELEPLPRALALLGGGSVTVHTL--------------VLPVAQEERNLVVMAKEAPTPSRYPRRPGVPGKNPL 241          
BLAST of Gcaud7844.t1 vs. uniprot
Match: A0A7C3VWV5_9BACT (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3VWV5_9BACT)

HSP 1 Score: 161 bits (407), Expect = 1.580e-45
Identity = 96/225 (42.67%), Postives = 139/225 (61.78%), Query Frame = 0
Query:    8 MLHETNSQYNLTGIRTRHGIIVKHLIDALTLLPVLDREAPKAIVDVGTGAGFPGLVLAVSRPHWSLTLLDSVRKKLAFHEQVVDELSLQNVHSEWGRAEERAQS-SLRQKFCVAVARSVAEMRVLAELTLPFVRVGGCVIAQKSVDSQLEEISDAENSIRVCGGRIE---EIITPWQSDWKELLEGGDEALDKDLDAKRVVLVRKEKPTPSRYPRKPGIPKKSPL 228
            +L E N+++NLT I     I +KH +D+L+LL  +D      ++DVGTGAGFPG+ L ++RP   +TLLDSVRKKL F E  ++ L L +VH   GRAE+  ++ S R+KF + V+R+V  + VLAEL LPF RVGG  +A K   S   E  +A N++ + GG++E   E + P         EG       +L    VV+++K KPTP +YPRK G+P+++PL
Sbjct:   33 LLLEWNAKFNLTRITDPAEIAIKHYLDSLSLLAFVDIPTGFRVIDVGTGAGFPGVPLKIARPDLEITLLDSVRKKLTFLESALECLGLSDVHLVHGRAEDLGKAESYREKFDLVVSRAVGRLNVLAELCLPFCRVGGLFVAYKGAKSTQAEAEEASNAVNILGGKLEAVHEFVLP---------EG-------NLQRSLVVIIKK-KPTPVQYPRKAGVPERNPL 240          
The following BLAST results are available for this feature:
BLAST of Gcaud7844.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IYX5_9FLOR2.240e-9562.56Ribosomal RNA small subunit methyltransferase G n=... [more]
R7Q7F0_CHOCR3.960e-6349.79Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QSX2_CHOCR2.600e-6048.93Uncharacterized protein n=2 Tax=Chondrus crispus T... [more]
R7QRY1_CHOCR1.820e-5952.04Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1DB23A9.750e-5446.98ribosomal RNA small subunit methyltransferase G-li... [more]
G8NCW0_9DEIN1.400e-4842.67Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A8J2VF76_9BACL1.160e-4643.17Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A7C3DN06_MEIRU1.830e-4641.15Ribosomal RNA small subunit methyltransferase G n=... [more]
UPI00057125261.030e-4542.0416S rRNA (guanine(527)-N(7))-methyltransferase Rsm... [more]
A0A7C3VWV5_9BACT1.580e-4542.67Ribosomal RNA small subunit methyltransferase G n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..96
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 1..228
e-value: 2.9E-66
score: 225.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..228
IPR003682rRNA small subunit methyltransferase GTIGRFAMTIGR00138TIGR00138coord: 6..172
e-value: 2.8E-40
score: 135.9
IPR003682rRNA small subunit methyltransferase GPFAMPF02527GidBcoord: 6..172
e-value: 5.9E-40
score: 136.5
IPR003682rRNA small subunit methyltransferase GPANTHERPTHR31760S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEINcoord: 7..228
IPR003682rRNA small subunit methyltransferase GHAMAPMF_0007416SrRNA_methyltr_Gcoord: 1..206
score: 21.208956
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 5..227

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_647_length_20364_cov_4.929216contigNODE_647_length_20364_cov_4.929216:12175..12861 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7844.t1Gcaud7844.t1Gracilaria caudata M_176_S67 malemRNANODE_647_length_20364_cov_4.929216 12175..12861 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7844.t1 ID=Gcaud7844.t1|Name=Gcaud7844.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=229bp
MLLRISEMLHETNSQYNLTGIRTRHGIIVKHLIDALTLLPVLDREAPKAI
VDVGTGAGFPGLVLAVSRPHWSLTLLDSVRKKLAFHEQVVDELSLQNVHS
EWGRAEERAQSSLRQKFCVAVARSVAEMRVLAELTLPFVRVGGCVIAQKS
VDSQLEEISDAENSIRVCGGRIEEIITPWQSDWKELLEGGDEALDKDLDA
KRVVLVRKEKPTPSRYPRKPGIPKKSPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003682rRNA_ssu_MeTfrase_G
IPR029063SAM-dependent_MTases