Gcaud7836.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7836.t1
Unique NameGcaud7836.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length122
Homology
BLAST of Gcaud7836.t1 vs. uniprot
Match: A0A2V3IHI6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHI6_9FLOR)

HSP 1 Score: 197 bits (500), Expect = 3.570e-63
Identity = 87/121 (71.90%), Postives = 105/121 (86.78%), Query Frame = 0
Query:    1 MALRFPSRVLSRRLSSLTEALDKSATKGPKLPAGNDPSAAHGPQHAIADTSRWRLISFVFALPVLGFGIIQSMNEHEHIEPPPDYPYLKIGNKVPRFPWGDDDLIGTSYDRHAKQHAEGDH 121
            MA R   R++SRRLS+L   +DKSATKGPKLPAGNDPSAAHGP HAIADT+RWR++S VFA+PVLG+ I+QSMNEH+H++ PP+YPYLKI ++VPRFPWGDDDLIGTSY+RHAK H   +H
Sbjct:    1 MAFRAAPRIVSRRLSTLAGTIDKSATKGPKLPAGNDPSAAHGPAHAIADTNRWRIVSVVFAVPVLGYAILQSMNEHQHVDAPPEYPYLKIASRVPRFPWGDDDLIGTSYERHAKAHGGEEH 121          
BLAST of Gcaud7836.t1 vs. uniprot
Match: R7Q9Q6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9Q6_CHOCR)

HSP 1 Score: 161 bits (408), Expect = 3.730e-49
Identity = 71/110 (64.55%), Postives = 90/110 (81.82%), Query Frame = 0
Query:    8 RVLSRRLSSLTEALDKSATKGPKLPAGNDPSAAHGPQHAIADTSRWRLISFVFALPVLGFGIIQSMNEHEHIEPPPDYPYLKIGNKVPRFPWGDDDLIGTSYDRHAKQHA 117
            R  SRR+++  EA+DK+A KGPKLPAGNDPSA+HG +HAIADT+RWR+IS VFALPV  + II  MN HEH E PP+YPYLK+  + PRFPWG++DLIGT +D+HA++ A
Sbjct:    9 RTASRRMNTAAEAIDKTAAKGPKLPAGNDPSASHGAEHAIADTNRWRIISAVFALPVSAYFIINMMNTHEHTEAPPEYPYLKMATRSPRFPWGEEDLIGTIHDKHARELA 118          
BLAST of Gcaud7836.t1 vs. uniprot
Match: A0A1X6NTS9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTS9_PORUM)

HSP 1 Score: 108 bits (270), Expect = 4.030e-28
Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = 0
Query:    2 ALRFPSRVLSRRLSSLTEALDKSATKGP--KLPAGNDPSAAHGPQHAIADTSRWRLISFVFALPVLGFGIIQSMNEHEHIEPPPDYPYLKIGNKVPRFPWGDDDLIGTSYDR-HAKQH 116
            A  F    + R  S+   A  ++A   P  ++P G DP+A H   HA++D  RWRL++ V ++PV G+  +Q M +H H EP P YPYL I ++VPRFPWGDDDLIGT +DR H + H
Sbjct:    8 AAAFGRATVRRASSAAAPASTEAAAARPAARMPEGVDPAAFHPKAHAVSDMWRWRLVTGVASVPVFGYFCLQMMADHAHPEPGPAYPYLHITSRVPRFPWGDDDLIGTPHDRLHKRDH 125          
BLAST of Gcaud7836.t1 vs. uniprot
Match: A0A7S0ZKD3_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKD3_9RHOD)

HSP 1 Score: 87.8 bits (216), Expect = 8.440e-20
Identity = 50/110 (45.45%), Postives = 64/110 (58.18%), Query Frame = 0
Query:    7 SRVLSRRLSSLTEALDKSATK-GPKLPA-GNDPSAAHGPQHAIADTSRWRLISFVFALPVLGFGIIQ-SMNEHEHIEPPPDYPYLKIGNKVPRFPWGDDDLIGTSYDRHA 113
            S V++RR      A +   TK GP+LPA G DP A H P+H  A+T +WR IS++    V  +GI   +  EH   E PP Y Y+   N+VP FPWG+ DLIGT Y R A
Sbjct:   25 SGVITRR--GYCVAAEAMPTKSGPRLPAVGPDPGAFHSPEHMAAETKKWRRISYICTPFVFLYGIYAIASGEHPSEEAPPAYDYIGFRNRVPSFPWGEGDLIGTPYQRAA 132          
BLAST of Gcaud7836.t1 vs. uniprot
Match: A0A5J4YV97_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YV97_PORPP)

HSP 1 Score: 78.2 bits (191), Expect = 5.490e-16
Identity = 44/118 (37.29%), Postives = 59/118 (50.00%), Query Frame = 0
Query:    8 RVLSRRLSSLTEALDKSATK--------------GPKLPAGNDPSAAHGPQHAIADTSRWRLISFVFALPVLGFGIIQSMNEHEHIEPPPDYPYLKIGNKVPRFPWGDDDLIGTSYDR 111
            RV++RR+ ++  A  +S  +              G K+P GNDP   H      +  + WR  S V    V  FGI      H H EP P+Y Y+K+  KVPR+PWGD +LIGT  DR
Sbjct:   10 RVVARRVPNVRRASGESLGEVDAKRKVLPWVERDGMKIPEGNDPGIYHDETFMDSQVTLWRRASLVCLPFVFLFGIYTLSGGHPHHEPTPNYDYMKVRLKVPRYPWGDRELIGTPSDR 127          
BLAST of Gcaud7836.t1 vs. uniprot
Match: M2W6S8_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W6S8_GALSU)

HSP 1 Score: 69.7 bits (169), Expect = 4.800e-13
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 0
Query:   30 KLPAGNDPSAAHGPQHAIADTSRWRLISFVFALPVLGFGIIQSMNEHEHIEP--PPDYPYLKIGNKVPRFPWGDDDLIGTSYDR 111
            KLP G D +A+   +H   +  +W+  S  F L V G        E EH E   PP+YP++    K PRFPWG++ LIGT YDR
Sbjct:   19 KLPPGFDKAASFPKEHHSQEAKKWKRFSLAFGLVVAGVAAYLFPKELEHHEVYIPPEYPFIDRKVKEPRFPWGNEPLIGTPYDR 102          
The following BLAST results are available for this feature:
BLAST of Gcaud7836.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IHI6_9FLOR3.570e-6371.90Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q9Q6_CHOCR3.730e-4964.55Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NTS9_PORUM4.030e-2845.76Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0ZKD3_9RHOD8.440e-2045.45Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4YV97_PORPP5.490e-1637.29Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
M2W6S8_GALSU4.800e-1341.67Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3D4.10.95.10Cytochrome c oxidase, subunit VIacoord: 38..118
e-value: 1.2E-11
score: 46.3
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILY81411Mitochondrial cytochrome c oxidase subunit VIacoord: 42..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..73
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..54
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 74..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1945_length_7517_cov_3.978050contigNODE_1945_length_7517_cov_3.978050:950..1496 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7836.t1Gcaud7836.t1Gracilaria caudata M_176_S67 malemRNANODE_1945_length_7517_cov_3.978050 950..1496 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7836.t1 ID=Gcaud7836.t1|Name=Gcaud7836.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=122bp
MALRFPSRVLSRRLSSLTEALDKSATKGPKLPAGNDPSAAHGPQHAIADT
SRWRLISFVFALPVLGFGIIQSMNEHEHIEPPPDYPYLKIGNKVPRFPWG
DDDLIGTSYDRHAKQHAEGDH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036418Cyt_c_oxidase_su6a_sf