Gcaud7728.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7728.t1
Unique NameGcaud7728.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length528
Homology
BLAST of Gcaud7728.t1 vs. uniprot
Match: A0A2V3IFV3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFV3_9FLOR)

HSP 1 Score: 201 bits (512), Expect = 1.300e-54
Identity = 154/534 (28.84%), Postives = 259/534 (48.50%), Query Frame = 0
Query:    1 MGLFSGILAVLTPFVLSLLLADALHAAINAAVVPKSFVRRQFMYAFFVLPIIDLFARVWLLQPFVPALALLAAAVVAAAVVVHWALHRVV-GMANHTAMLTSSVHQIIEYAQAEVISSQLVPKCHNLTHSVQTLFTNLNYTRLSADADHAFTKYLSIANQTGF-DSGVQYIE-LLGNFSRTPVLMEARRNLSNILNNSLHSAQFTDLIRNGESYNNESLIFDELKSNLTLLFDRLSFENTSSEGPFVQIIAIVKTTWPAVEERFNALRLSLGSRTPQIVSSSTISGEAKRTLDEILKVAAGQHSLRDAFRSLLLTPTSETKEAYQMCDAYDFLHVDPRWVVALLTIML----ISVPFMYIGRTLLQSLIQWHLSKTYRHVANEAQREIDGYILTGGVTGIGFGAAQATIQALLWAFLPFSAQAKLVLLVHCAMLMVIHCVTQMAINGAEGRRDLMFRWKGRKAWWILTTAVHVVTAMWWTAQYLSALVCALLRVDTVLGLLLVADAVVLAIYAWWGRSICRRARSDEACHSRRE 527
            M  ++ I+ +  PF   L+    L A + +  +P+ +VRRQ + A F++P++D+F RVWLL P +P +AL +    AA  +  W L  V+   AN    L S+  +  EY  + V   +  P    +  ++  +F+  +   L A +D A    LS   QT + D G + I   L N +  PV+ E   N+S ++  +L + + +DL+ N +        F    + L+ L + LS +   + G   Q  + +      V+E    L+ SL   +  I+ + T+S      LDEIL+V  G+ S  DA  S     + E     +    +    V+P WVV ++ +++    I  P + + R  LQ  +QWH++K Y     + +R + G++ TGG+ G  FG  QA    +  AFLP S Q +L L+ H  +L++ H V  ++I+ AEGR+D+M  W+G + WWI  T +  V  +WW  Q    L    + +D  + L ++ D  V     W  + +   AR +E  H +R+
Sbjct:    1 MSTWTFIITMAAPFFYLLIFIMFLKALLPSTSLPRPYVRRQLLRALFLVPVLDIFVRVWLLLPVLPLVAL-SFVFNAALSIGAWYLSSVLFETANRFFSLMSNWQEAGEYIGSSVFPLKESPLWSTVATNLTNMFSKADSRLLIALSDQAEVFLLS---QTKWQDEGTELIRNSLMNLTSQPVVQEFGANVSMVITKALDTVRLSDLLPNADLSPQSQYKFLTFTNALSQLINSLSADQLLTNG--TQPKSFMSAA-KGVKEAAKDLQESLLLASSDILGNKTLSSGGNAALDEILRVMDGRSSFWDAANSSW--QSMEFPSTSKASGLFSLSFVEPMWVVRIIAVLVFLCGIVTPLLLMARARLQLWLQWHVAKYYVKEVEKRERNVSGWVTTGGIVGAAFGTTQACYAGIALAFLPVSTQGRLALVNHTCVLVLAHGVGMVSISSAEGRKDVMENWEGGRKWWISVTGLQAVLKIWWDFQLGMILAADFVGLDVTVTLFMITDIFVSLALRWCLQRVVVNARKEEETHLKRD 525          
BLAST of Gcaud7728.t1 vs. uniprot
Match: A0A2V3IFV2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFV2_9FLOR)

HSP 1 Score: 127 bits (318), Expect = 9.470e-28
Identity = 123/529 (23.25%), Postives = 230/529 (43.48%), Query Frame = 0
Query:    6 GILAVLTPFVLSLLLADALHAAINAAVVPKSFVRRQFMYAFFVLPIIDLFARVWLLQPFVPALALLAAAVVAAAVVVHWALHRVVGMANHTAMLTSSVHQIIEYAQAEVISSQLVPKCHNLTHSVQTLFTNLNYTRLSADADHAFTKYLSIANQTGFDSGVQYIELLGNFSRTPVLMEARRNLSNILNNSLHSAQFTDLIRNGESYNNESLIFDELKSNLTLLFDRLS---FENTSSEGPFVQIIAIVKTTWPAVEERFNALRLSLGSRTPQIVSSSTISGEAKRTLDEILKVAAGQHSLRDAFRSLLLTPTSETKEAYQMCDAYDFLHVDPRWV--VALLTIML--ISVPFMYIGRTLLQSLIQWHLSKTYRHVANEAQREIDGYILTGGVTGIGFGAAQATIQALLWAFLPFSAQAKLVLLVHCAMLMVIHCVTQMAINGAEGRRDLMFRWKGRKAWWILTTAVHVVTAMWWTAQYLSALVCALLRVDTVLGLLLVADAVVLAIYAWWGRSICRRARSDEACHSRRE 527
             +L +L PF     L     + +  + + K   RRQ +    +LP + L  ++W   P++P         V         ++     A+    L S   ++ EY     IS +     ++L  ++  + T      L   A   +  Y     Q+  +    +  L+ N +  P+L E   N +  +  +L + + +DL    +        F    + L+   +  S   F   S++   ++  + V   W A +    A + SL   T  I+   T+S  A   LD IL+V  G+ ++ DA +S L + T+     +++            W+  +AL+ ++L  +S+P M + ++LLQ  +QW L K Y+   ++A+R ++G+ILTG +TG+ +   Q   +++ WA    S    L    H  +L  IH    +AI  AEGR+D++  W+ R+ WW+    +     +WW    ++ +   +L  + +  L + AD VV        R + +RA+ DE  +S+ +
Sbjct:    6 SVLTLLAPFASLYYLIKFQCSRLPLSNLSKQCKRRQILRGLVLLPAVTLLVQLWKAVPYLPFFVFSFVFQVGIPSASRLIVNAGFDTAHRFLELVSDYKEVGEYLGRSTISPRGNSLLNSLMENLTRILTEDGGIHLIKVATQKWQHYQDALTQSNEE---HFSNLINNLTSLPLLSEMGNNATAAITYTLEAVRLSDLFPRAQLSPRSQQKFLAFTTALSQSINSSSAHLFALNSTKPERLE--SSVHNVWQAAK----AFQDSLQLETTDILGDQTLSPGATVVLDRILRVMDGRSTVGDALKSSLESVTNGGSTLFRIPSLLS------TWMLQIALMLVVLWVVSIPLMMMTQSLLQLWLQWQLVKKYKEEVSDAERNMEGWILTGWITGVMYATVQTIWRSVEWATSNSSFLGLLAFAYHFQVLHEIHGTAMVAIASAEGRKDVLNGWRARRTWWMAAVILTSSLKVWWDFHLVTMIGFLVLGNNGMAFLFIAADGVVSLALQIGVRRMVKRAKKDENEYSKHD 519          
The following BLAST results are available for this feature:
BLAST of Gcaud7728.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IFV3_9FLOR1.300e-5428.84Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IFV2_9FLOR9.470e-2823.25Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 336..362
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 416..437
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 489..508
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 509..527
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 438..456
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 457..477
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 478..488
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 383..410
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 87..335
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..21
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..86
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 363..382
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 411..415
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 61..66
NoneNo IPR availableTMHMMTMhelixcoord: 490..509
NoneNo IPR availableTMHMMTMhelixcoord: 68..90
NoneNo IPR availableTMHMMTMhelixcoord: 456..475
NoneNo IPR availableTMHMMTMhelixcoord: 42..61
NoneNo IPR availableTMHMMTMhelixcoord: 421..443
NoneNo IPR availableTMHMMTMhelixcoord: 336..358
NoneNo IPR availableTMHMMTMhelixcoord: 384..406
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_729_length_19030_cov_3.966471contigNODE_729_length_19030_cov_3.966471:1929..3512 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7728.t1Gcaud7728.t1Gracilaria caudata M_176_S67 malemRNANODE_729_length_19030_cov_3.966471 1929..3512 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7728.t1 ID=Gcaud7728.t1|Name=Gcaud7728.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=528bp
MGLFSGILAVLTPFVLSLLLADALHAAINAAVVPKSFVRRQFMYAFFVLP
IIDLFARVWLLQPFVPALALLAAAVVAAAVVVHWALHRVVGMANHTAMLT
SSVHQIIEYAQAEVISSQLVPKCHNLTHSVQTLFTNLNYTRLSADADHAF
TKYLSIANQTGFDSGVQYIELLGNFSRTPVLMEARRNLSNILNNSLHSAQ
FTDLIRNGESYNNESLIFDELKSNLTLLFDRLSFENTSSEGPFVQIIAIV
KTTWPAVEERFNALRLSLGSRTPQIVSSSTISGEAKRTLDEILKVAAGQH
SLRDAFRSLLLTPTSETKEAYQMCDAYDFLHVDPRWVVALLTIMLISVPF
MYIGRTLLQSLIQWHLSKTYRHVANEAQREIDGYILTGGVTGIGFGAAQA
TIQALLWAFLPFSAQAKLVLLVHCAMLMVIHCVTQMAINGAEGRRDLMFR
WKGRKAWWILTTAVHVVTAMWWTAQYLSALVCALLRVDTVLGLLLVADAV
VLAIYAWWGRSICRRARSDEACHSRRE*
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