Gcaud7704.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7704.t1
Unique NameGcaud7704.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length347
Homology
BLAST of Gcaud7704.t1 vs. uniprot
Match: A0A2V3J6F3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6F3_9FLOR)

HSP 1 Score: 494 bits (1273), Expect = 1.190e-173
Identity = 255/346 (73.70%), Postives = 294/346 (84.97%), Query Frame = 0
Query:    1 MVLIRLKAPFVSVIATVLSTLAELALLSFLFALNNLHECRRLQSGRNVQVRRHLLRTRIISLICLAAFFALEVAFSFYNDPVDDVVLETHECIAVSNSVLEGGNSTSFIRASDILVECRKLENGTITQFGGNFSRQTEQVNCSSTAMYTHPIDDETTQESVVNAPFRCVSS-DEGDACVFVQQQGNLSLISAPFFRDELEFLPETLPHVTTELNFKPPSNISLFSDRALRAFLRNIQGNSALRRIIYSGAREDNCTFPVVRGSAAATTVPLAMIIALVGVWGVAFLIFLSVFWLRKGVFFKLEDPMDWATRSVRPADDPLGGNPILTGLVENGKTLVQISTSSGSS 345
            MVLIRLKAPFVSVI TVLSTLAELALLSFLF LNNLHEC++LQ GR+VQVR+HL RTR++S++CL AFFALEV FSFYNDPV++V +E HECI  SNSV + G+ST F+RASDILVECR+L+NGTITQFGGNFS +T+QV CS+ AMYTHP+ DET++E V + PF CVS  +EG ACVFVQQ+GNLSLISAPFF DEL  LP+TLPH+ TEL+F PPSN+SLF+ RA  AFL+NIQG SALRRIIYSGA ED C FPVVRGSA  TTVPLAMI+AL  VW VA  +F SVF LR+GVFFKL+DPM WATRSVR ADDPLG NP+LTGL+++ KTLV ISTS  SS
Sbjct:    1 MVLIRLKAPFVSVIVTVLSTLAELALLSFLFVLNNLHECKQLQRGRSVQVRQHLRRTRLLSVVCLGAFFALEVVFSFYNDPVNNVQIEIHECITASNSVKDSGDSTQFLRASDILVECRRLDNGTITQFGGNFSSRTQQVECSTEAMYTHPLGDETSEEIVADVPFGCVSGGEEGAACVFVQQRGNLSLISAPFFLDELSILPDTLPHIITELHFTPPSNVSLFATRATNAFLQNIQGPSALRRIIYSGASEDQCAFPVVRGSA--TTVPLAMIVALAAVWAVALAMFASVFALRRGVFFKLDDPMHWATRSVRAADDPLGDNPVLTGLMQDDKTLVHISTSESSS 344          
BLAST of Gcaud7704.t1 vs. uniprot
Match: A0A2V3ISI7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISI7_9FLOR)

HSP 1 Score: 139 bits (349), Expect = 2.570e-34
Identity = 107/357 (29.97%), Postives = 166/357 (46.50%), Query Frame = 0
Query:    1 MVLIRLKAPFVSVIATVLSTLAELALLSFLFALNNLHECRRLQSGRNVQVRRHLLRTRIISLICLAAFFALEVAFSFYNDPVDDVVLETHECIAVSNSVLEGGNSTSFIRASDILVECRKLENGTITQFGGNFSRQTEQVNCSSTAMYT--------HPIDDETTQESVVNAPFRCVSSDEGDACVFVQQQGNLSLISAPFFRDELEFLPET---LPHVTTELNFKPPSNISLFSDRALRAFLRNIQGNSALRRIIYSGAREDNCTFPVVRGSAAATTVPLAMIIALVGVWGVAFLIFLSVFWLRKGVFFKLEDPMDWATRSVRPADDPLGGNPILTGLVENGKTLVQISTSSGSSK 346
            MVLI LK+ + S+IAT+LS LAELALLS +   N   ECR L++G  V VR H  RTR +++    AF  LEV+ SF++DP       T  CI++    +  G     +RA+ + + C       + Q  GN S   E + C    +++         P+ DE T E        C+   E + C F+   G+    +      +L F+ +    L    T + +           R++      +     LRR +++GA E  C F V    + ATT+    + A+   W ++   FL    +R  VF+ + DP+DWA ++VR  D     NP++T   ENG   V ++ SS  S+
Sbjct:    1 MVLIPLKSQYTSLIATILSGLAELALLSAVLGYNKYLECRALENGGRVNVRHHRFRTRALTVAATLAFVFLEVSNSFFSDPALKRGEVTKSCISLDALPIRRGMLDISLRAAVVGINCLGTNTSLLWQLAGNISDDGE-IKCGDDFLFSADIHHSPNEPVPDEHTME--------CILDGELNLCAFLYSNGSEVTFTEIVLDTDLSFVLDNNYALRVWKTTVYYNTTGMERELLRRSITLARDLVTDQFVLRREVFAGAEETECNFDVF---SPATTIKEGFLYAIAVAWTLSLAAFLGSLAIRGRVFYDMSDPLDWARQTVRDEDSSDIDNPVVTTRYENGTRFVLVTRSSAPSE 345          
BLAST of Gcaud7704.t1 vs. uniprot
Match: A0A2V3J5C2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 137 bits (345), Expect = 1.150e-33
Identity = 110/365 (30.14%), Postives = 172/365 (47.12%), Query Frame = 0
Query:    1 MVLIRLKAPFVSVIATVLSTLAELALLSFLFALNNLHECRRLQSGRNVQVRRHLLRTRIISLICLAAFFALEVAFSFYNDPVDDVVLETHECIAVSNSVLEGGNSTSFIRASDILVECRKLENGTITQFGGNFSR----------------QTEQVNCSSTAMYTHPIDDETTQESVVNAPFRCVSSDEGDACVFVQQQGN-LSLISAPFFRDELEFLPE--TLPHVTTELNFKPPSNISLFSDRALRAFLRNIQGNSALRRIIYSGAREDNCTFPVVRGSAAATTVPLAMIIALVGVWGVAFLIFLSVFWLRKGVFFKLEDPMDWATRSVRPADDPLGGNPILTGLVENGKTLVQISTSSGSSK 346
            MVLI LK+ + S+I TV+S +AELALLS +   N   ECR LQ+G  V VR H  RT+ +++    AF  LEV  SFY+DP D   L    C ++    ++ G      + + + V+C  + +    Q  GN S                 + E+     TA      D+    E VV     CV    G +CVFV + GN ++        D    L E  TLP   T +++      S F+ RA+    + +     LRR +++G+    C F   +  + AT V    I A+V  W ++   F+  F +R+ +F+ + DP+ WA +++R  D     NP++T + ENG   + ++ SS  S+
Sbjct:    1 MVLIPLKSQYTSLIVTVISGIAELALLSAVLVFNKYLECRALQNGGKVNVRHHRFRTKALTVAATLAFVFLEVFSSFYSDPDDKTELVRKNCTSLDALTVQQGLLNISTQTTVVGVKCIGINSTLFWQHAGNISDGRNIGNGGNIGDDEVFECEKKEVLYTANVERAPDEPVPDEYVVG----CV----GTSCVFVYRSGNEVTFTDFVHSEDVSRVLNESITLPVWKTTISYNVTGLESAFATRAVDLLSQGVTDGFTLRRGVFAGSAITQCNF---KTFSDATRVRKGFIYAIVIAWALSISAFVGSFAIRRRIFYDMSDPLHWAQKTIRDNDLSDTDNPVVTTVYENGSRALLVTRSSAPSE 354          
BLAST of Gcaud7704.t1 vs. uniprot
Match: A0A2V3IN83_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN83_9FLOR)

HSP 1 Score: 82.4 bits (202), Expect = 6.800e-14
Identity = 76/318 (23.90%), Postives = 136/318 (42.77%), Query Frame = 0
Query:    3 LIRLKAPFVSVIATVLSTLAELALLSFLFALNNLHECRRLQSGRNVQVRRHLLRTRIISLICLAAFFALEVAFSFYNDPVDDVVLETHECIAVSNSVLEGGNSTSFIRASD--ILVECRKLE-----NGTITQFGGNFSRQTEQ--VNCSSTAMYTHPIDDETTQESVVNAPFRCVSSDEGDACVFVQQQGNLSLISAPFFRDELEFLPETLPHVTTELNFKPPSNISLFSDRALRAFLRNIQGNSALRRIIYSGAREDNCTFPVVRGSAAATTVPLAMIIALVGVWGVAFLIFLSVFWLRKGVFFKLEDPMDWATRS 311
            +I L+     ++ T++S L+E+ L+S +  +    EC  L + R V ++ H LR R+I ++ +  F ALE   S +       V  +H+C+ V     E     S +   +  +++ C K+      N  I  + GN+SR  E+  V+CS+  +  + +D +       NA   C        CVF+  Q +    S P          E   + T  +    PS ++  +   L  + + I     +RR ++  A    C   +  GS   T VP  +I      W  + ++F     L+ G+F+ + DP+ W  R+
Sbjct:   16 IIPLRPLTTQLLFTIVSALSEIGLISAVLVILTKKECHTLSTERPVSIKSHSLRWRLIPVVAMLMFIALETLVSVHTKTHIHHVKNSHKCVQVDLRTSEALEVESSLNKEEEAVMLNCVKMTPAEDANFNIEVYPGNYSRSGEKIFVDCSADWLMKYKLDTKGKGILEPNAEQHC----RNGFCVFLYSQESKVFFSPPLPSARFNHTNEYTGYWTEFIPGAVPS-LNSTATYLLLLYQKGILEEIQIRRKLFMSAERGQCE--MTNGSKEHTLVPYWLISITALSWFCSAILFALTRVLKSGIFYNISDPLHWTRRT 326          
BLAST of Gcaud7704.t1 vs. uniprot
Match: A0A2V3IUG0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUG0_9FLOR)

HSP 1 Score: 69.7 bits (169), Expect = 1.350e-9
Identity = 62/310 (20.00%), Postives = 130/310 (41.94%), Query Frame = 0
Query:    3 LIRLKAPFVSVIATVLSTLAELALLSFLFALNNLHECRRLQSGRNVQVRRHLLRTRIISLICLAAFFALEVAFSFYNDPVDDVVLETHECIAVSNSV-LEGGNSTSFIRASD--ILVECRKLENGTITQFG-GNFSRQTEQVNCSSTAMYTHPIDDETTQESVVNAPFRCVSSDEGDACVFVQQQGNLSLISAPFFRDELEFLPETLPHVTTELNFKPPSNISLFSDRALRAFLRNIQGNSALRRIIYSGAREDNCTFPVVRGSAAATTVPLAMIIALVGVWGVAFLIFLSVFWLRKGVFFKLEDPMDWA 308
            +I L   +  ++ T ++ + E+  +S  F L  L EC  L + R V++  H    R++ ++ +  F ALEV  S +  P    +     C  V+ +      N +   R S+  +L  C +  +  I     G  S  T  V C+   ++ +  D    ++           +++    V + + G    +S P  R   +     +    T LNF    ++ + + + L  + + +     +RR +   +++  C F   R   +   +P  ++  ++ +WG    +F+    L++GVF+ +++P  WA
Sbjct:   17 IIPLPTLYTQLMFTAINAITEIGCVSATFVLIGLAECYALTTHRRVRLASHRRYHRVVQVVAMITFIALEVLISTFTKPHTHHIESKQNCTQVNRTENFLALNDSDERRMSEEMVLYSCLRTNSSNIINISTGVKSEDTGAVQCNQEWIFQYENDRTDHEQFSERDEVGKQCNEQFCTLVSLDRSGTRMFLSKPVPRASFDSDNNKIDGKWTNLNFNVQIDVKIMATKVLGLYEQGVFDELDVRRRLLVQSKKQECQFSSDRKEHSV--LPFWLLGLIISMWGTCAFLFILTRVLKRGVFYDIDNPSHWA 324          
The following BLAST results are available for this feature:
BLAST of Gcaud7704.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J6F3_9FLOR1.190e-17373.70Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ISI7_9FLOR2.570e-3429.97Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5C2_9FLOR1.150e-3330.14Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IN83_9FLOR6.800e-1423.90Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUG0_9FLOR1.350e-920.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 37..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 294..346
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..269
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 270..293
NoneNo IPR availableTMHMMTMhelixcoord: 271..293
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 59..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_948_length_15851_cov_4.557678contigNODE_948_length_15851_cov_4.557678:5973..7013 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7704.t1Gcaud7704.t1Gracilaria caudata M_176_S67 malemRNANODE_948_length_15851_cov_4.557678 5973..7013 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7704.t1 ID=Gcaud7704.t1|Name=Gcaud7704.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=347bp
MVLIRLKAPFVSVIATVLSTLAELALLSFLFALNNLHECRRLQSGRNVQV
RRHLLRTRIISLICLAAFFALEVAFSFYNDPVDDVVLETHECIAVSNSVL
EGGNSTSFIRASDILVECRKLENGTITQFGGNFSRQTEQVNCSSTAMYTH
PIDDETTQESVVNAPFRCVSSDEGDACVFVQQQGNLSLISAPFFRDELEF
LPETLPHVTTELNFKPPSNISLFSDRALRAFLRNIQGNSALRRIIYSGAR
EDNCTFPVVRGSAAATTVPLAMIIALVGVWGVAFLIFLSVFWLRKGVFFK
LEDPMDWATRSVRPADDPLGGNPILTGLVENGKTLVQISTSSGSSK*
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