Gcaud7662.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7662.t1
Unique Name	Gcaud7662.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	358

Homology

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BLAST of Gcaud7662.t1 vs. uniprot
Match: A0A2V3IET1_9FLOR (BPI1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IET1_9FLOR)

HSP 1 Score: 409 bits (1052), Expect = 8.160e-140
Identity = 232/353 (65.72%), Postives = 270/353 (76.49%), Query Frame = 0

Query:   11 PARFTLHDDDELGSFVELDESADYHPTSRPASAAAQSAATCAPRPNTQPDGTASASAPEAPPA-----LLRKLVARYPSLDSDALESLLTACDNDIDAVSALVDADSSVSSVDDAALAASLQERENRAVARRHRRNGASFALDQTQMDNLVSTLKNIVVPALQAHFEELVLPDTNDQTASIAYSLKHLQVTALSLPKVTVRPALDRKYVFVNVLNAQLELHLGKWRYQSQGFVPLQDEGQARLSVQGLNILLKLQPRWSFDGGAKVVVSDCHVTVDGVVRFKTYDAGANWAYNAVAVVLKPLVLSYVKEAIADTVTRSLTLYLREWSCSRPLDTSRASAAS-NTSQAPVAAAE 357
            PARFTLHD    G F ELDESADY  T+    +AA       P   + P+ +AS+  P   PA     LL KLV RYPSLD D L +LL +CDNDIDA S LV+ D++ SS DDA LAASLQERENR  + RHRRN A F L   QMD+LVSTLK+IVVPAL AHFEELVLPDT DQTASI YSL+H+QVTALSLP VTVRPA DRK VF+ VLNAQLELH+G W+Y+S+G VP+ D GQARLSVQGL ILLKL+PRWS DG A++ VS+C+VTVDGV RFKTY A A+WAY+A+A+VLKPLVLSYVKEAIAD+V+R+L LYLR+WSCSR LD S  S AS + +QA + AAE
Sbjct:    4 PARFTLHD----GDFAELDESADYETTA----SAAPGPVVARPALPSAPNLSASSPQPVQHPAQPHQSLLSKLVRRYPSLDKDVLTALLVSCDNDIDAASTLVEGDTNASSADDALLAASLQERENRRASVRHRRNNAVFPLQPFQMDSLVSTLKHIVVPALHAHFEELVLPDTTDQTASILYSLQHVQVTALSLPNVTVRPAPDRKSVFLTVLNAQLELHVGSWKYESRGIVPVNDAGQARLSVQGLTILLKLEPRWSHDGTARINVSECNVTVDGVTRFKTYGAKADWAYSAIALVLKPLVLSYVKEAIADSVSRALALYLRQWSCSRTLDASPGSTASPSATQAQLTAAE 348

[Close]

BLAST of Gcaud7662.t1 vs. uniprot
Match: R7QPP0_CHOCR (BPI1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPP0_CHOCR)

HSP 1 Score: 217 bits (553), Expect = 2.710e-66
Identity = 109/200 (54.50%), Postives = 145/200 (72.50%), Query Frame = 0

Query:  155 LVSTLKNIVVPALQAHFEELVLPDTNDQTASIAYSLKHLQVTALSLP--KVTVRPALDRKYVFVNVLNAQLELHLGKWRYQSQGFVPLQDEGQARLSVQGLNILLKLQPRWSFDGGAKVVVSDCHVTVDGVVRFKTYDAGANWAYNAVAVVLKPLVLSYVKEAIADTVTRSLTLYLREWSCSRPLDTSRASAASNTSQAP 352
            +V TL+ IVVPAL+AHFEELVLPDT D +  + Y L+  QV+ LSLP   + V+P  D K + V+V+N  LEL +G+W Y+S+GFVP++D G AR+SV G++I + L+PRWS  GG KVV++DC VT+DG VRF T  A A+WAY A+ VVLKPLV+SY+KEAIADTV+++L  +L +W+ SR LD   A A     Q P
Sbjct:    1 MVDTLREIVVPALRAHFEELVLPDTKDTSVGVEYELQRFQVSNLSLPPENIHVKPTTDGKLIRVSVVNTFLELEVGRWSYESKGFVPVKDAGTARVSVNGMSISVMLEPRWSHGGGTKVVIADCVVTIDGKVRFATEGAVADWAYKAITVVLKPLVVSYIKEAIADTVSKTLAFHLSQWAFSRSLDDQPARAQRTEPQRP 200

The following BLAST results are available for this feature:

BLAST of Gcaud7662.t1 vs. uniprot

BLAST of Gcaud7662.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IET1_9FLOR	8.160e-140	65.72	BPI1 domain-containing protein n=1 Tax=Gracilariop...	[more]
R7QPP0_CHOCR	2.710e-66	54.50	BPI1 domain-containing protein n=1 Tax=Chondrus cr...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017942	Lipid-binding serum glycoprotein, N-terminal	PFAM	PF01273	LBP_BPI_CETP	coord: 161..323 e-value: 5.2E-12 score: 45.7
None	No IPR available	GENE3D	3.15.10.10		coord: 156..329 e-value: 1.7E-22 score: 82.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
IPR017943	Bactericidal permeability-increasing protein, alpha/beta domain superfamily	SUPERFAMILY	55394	Bactericidal permeability-increasing protein, BPI	coord: 158..327

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_273_length_32656_cov_4.516229	contig	NODE_273_length_32656_cov_4.516229:23871..24944 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7662.t1	Gcaud7662.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_273_length_32656_cov_4.516229 23871..24944 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7662.t1 ID=Gcaud7662.t1|Name=Gcaud7662.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=358bp
MSRQAQSKPPPARFTLHDDDELGSFVELDESADYHPTSRPASAAAQSAAT
CAPRPNTQPDGTASASAPEAPPALLRKLVARYPSLDSDALESLLTACDND
IDAVSALVDADSSVSSVDDAALAASLQERENRAVARRHRRNGASFALDQT
QMDNLVSTLKNIVVPALQAHFEELVLPDTNDQTASIAYSLKHLQVTALSL
PKVTVRPALDRKYVFVNVLNAQLELHLGKWRYQSQGFVPLQDEGQARLSV
QGLNILLKLQPRWSFDGGAKVVVSDCHVTVDGVVRFKTYDAGANWAYNAV
AVVLKPLVLSYVKEAIADTVTRSLTLYLREWSCSRPLDTSRASAASNTSQ
APVAAAE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR017942	Lipid-bd_serum_glycop_N
IPR017943	Bactericidal_perm-incr_a/b_dom