Gcaud7640.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7640.t1
Unique NameGcaud7640.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length957
Homology
BLAST of Gcaud7640.t1 vs. uniprot
Match: A0A2V3IXL1_9FLOR (TAF4 domain-containing protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXL1_9FLOR)

HSP 1 Score: 772 bits (1994), Expect = 1.140e-263
Identity = 502/999 (50.25%), Postives = 624/999 (62.46%), Query Frame = 0
Query:    1 METNKNLDELLAAIGDGSANPTNGAPRVKQASNTARNAAATFSQPLQMPIPPVTQARSRPASSNMGAS------GAQPNVNGHYNQLLSLLQGHNAPLVNQQIPQQHNAPVQRLSASNQLTFAQTSRPTPSQALDPKALAALKRQHQIQAAQAKQRRESLANVPTINRSAPPVP--IPRIGTQGFPAGMPSVV---NVPPNMPTT-TKQDPQHSSSLSSQQRPNSAAQQAQS-----RSITQEQVIVGHFCRHAIKTLKKIMEGLPYAAQGEARLREHIKAVWSQWVKGMITRPQLLQSVSNFVKQSAPAAKDVDVIKEFKAWYEHEXXXXXXXXXXXXXXXXXXTQVRHPQPAG--QSVNRANNLPLHPGNQAVRTNMAPQTLPAASTHIKVEQQRPNVPRTAGQTIAAKPEPMR-VVPTRTPTSKNAVG-GSGENVRGRQLAGSTMTRPQAVPVHASSVNAPNIMMHSTIPPQQRTVNQVVVSKIADGRPGSSPKGGQKIVGGVPQQAGKSVGGKSLLHNKAAAQTKPKQPRRPPQKSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQINYTTHQLQSLPAKRVLDSNVSSSPPNAVKKIKTVSKPPKGSSAKKKPPGAVGNPVASKGARPPVQRPEQKSKGAKRPMATGA-LPPSGPTSMSLGNPNADAA-QKKNRRQEDLKEINLVDNVVDIEDEEVKLNVDANGRRQAIEEVVQYNPDMIVSGPILRKKMQSIAKRHGIDENINKEAMEMMSLAVRERLACILESLKTVASVRVGAEKDQWGRVETGLNVREKLQRAREDEERTLQVAAEMRVKRRKEQREAEAKRLAGEAAKNDKSAKDASAAAEXERKEKLALEKKKKESSSQRDALSGLVRDFDRRRRRSAKPLAPLKPL---------------------GLKPLGSLDRHKELGPLVKLGRSNTTVPRGLGEDPSTPHVELNVTLRDCLFLFESERNTKKGSLLYKWYTRLPNG 955
            M+ +KNL+ELLAAIG+GS  P N APR   +S  A N  + F Q   + IP + Q  SRP S+N+GA+       A P V+GHY +L++LLQ   A  VN Q+ Q  N   +R++  N +         P+Q+LDPKA+AAL+R+ QIQAAQ KQRRE+ AN   INRS  PVP   PR  +QG PAG+ SVV   +VP N     T++  ++SS+L + QRP SA+Q  QS     R+I QEQ IV HFC HAIKT+ K+MEG P+AAQ +ARLREHIK VWSQWV+G+I+RPQL QSV+ FVKQS PAAKDVDVI++FKAWYEHE                   Q + P      Q+V+R  +  +H  +QAVR N+APQ + +A + +K EQ    VPR +G+TI  KP  +R V   R P     VG G G+++  + + GS +   Q   + A+SV++ + M+  T P  Q    Q V S +   R  SSPKG Q+++     QAGKS+GGKSLL NK  AQ+KPK PRRP QK+                                N+Q+ Y  H    LP KRVLD+  SSSPPNA+K+ K   KP K    KKKP  AVGNP   KGARPPV + + K++  KRP A GA L  SG  S + G    D A QKK RR EDLKEINLVDNVVDIEDEEVKL VDA+G+ Q +E+VVQY+ DMI++GP LRKKM +IAKR  + E   KEAME+MSLAVRERLA ILESLK +A+ R+ + K+QWG V TG+N+REKL+R R+DEER LQVAAEMRVKRRKE                            X    KLALEKK KESSSQRDA+SGL+R+FDRRRRR+AKPLAPLKPL                     GLKPLGSLD  K  GPL KLGRSN+ VPRGLG+ P   +V+L VTLRDCLFLFES+RNT+K +L++KWY RL  G
Sbjct:    1 MDKSKNLNELLAAIGNGSTAPKNAAPRGTSSSAPASNQPSAFPQRPAISIPTIPQPISRPTSTNVGAAPTAPTAAAPPTVDGHYKELVTLLQRQPATAVNPQLQQAANPNTRRVATGNPMPLVPPGSQIPTQSLDPKAVAALRRRQQIQAAQVKQRREAYAN---INRSTQPVPPSFPRSTSQGIPAGIQSVVGTRSVPGNGRIEHTQEGMRNSSNLVAPQRPASASQSGQSHASNSRTIAQEQAIVVHFCHHAIKTVTKLMEGRPFAAQIDARLREHIKVVWSQWVRGLISRPQLFQSVATFVKQSNPAAKDVDVIRDFKAWYEHEYEMQRQRTLDQRRQGHQEDQNQVPSQEAPTQTVSRVVSHAVHGISQAVRPNVAPQHMVSARSQMKAEQAVIGVPRPSGKTIGTKPVAIRGVAVNRVPPQAPGVGRGPGKSIANKSIGGSGL---QGAVIVANSVSS-HAMVQKTTPTGQSANKQTVASAMPVSRTESSPKGPQRVI----PQAGKSIGGKSLLPNKNTAQSKPKPPRRPAQKTTPKGPVKTPPKGAGKGKSPAAYPFHGGMPSSSNLQVGYHAHAQSHLPGKRVLDNASSSSPPNALKRAKPAPKPSKAPLGKKKPAAAVGNPGPGKGARPPVPKLDPKNRAGKRPAAPGAGLVHSGGASTAPGVQVLDGAGQKKVRRHEDLKEINLVDNVVDIEDEEVKLKVDASGKPQTVEDVVQYSSDMILAGPRLRKKMGTIAKRTDMTEGFTKEAMEVMSLAVRERLASILESLKPIATSRLDSAKEQWGTVATGMNIREKLERMRQDEERALQVAAEMRVKRRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLALEKKXKESSSQRDAMSGLIREFDRRRRRAAKPLAPLKPLSKPGGLPPIPKRPNSESFGRPGLKPLGSLDSLKAAGPLFKLGRSNSAVPRGLGKAPVQTNVKLRVTLRDCLFLFESDRNTRKSTLIHKWYARLQCG 988          
BLAST of Gcaud7640.t1 vs. uniprot
Match: R7Q6Z9_CHOCR (TAF4 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6Z9_CHOCR)

HSP 1 Score: 328 bits (841), Expect = 3.030e-94
Identity = 316/853 (37.05%), Postives = 417/853 (48.89%), Query Frame = 0
Query:  219 QSRSITQEQVIVGHFCRHAIKTLKKIMEGLPYAAQGEARLREHIKAVWSQWVKGMITRPQLLQSVSNFVKQSAPAAKDVDVIKEFKAWYEHEXXXXXXXXXXXXXXXXXXTQVRHPQPAGQSVNRANNLPLH----------------PGNQAVRTNMAPQTLPAAST---------------HI-KVEQQRPNVPRTAGQTIAAKPEPMRVVPTRTPTSKNA--VGGS----GENVRGRQLAGSTMTRPQAVPVHASSVNAPNIMMHSTIPPQQRTVNQVVVSKIADGRPGSSPKGGQKIVGGVPQQAGKSV-GGKSLLHNK--------AAAQTKPKQPRRPPQKSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQINYTTHQLQSLPA-----------------KRVLDSNVSSSPPNAVKKIKTVSKPPKGSSAKKKPPGAVGNPVASKGARPPVQRPEQ--KSKGAKRP---MATG-----ALPPSGPTSMSLGNPNADAAQKKNRRQEDLKEINLVDNVVDIEDEEVKLNVDANGRRQAIEEVVQYNPDMIVSGPILRKKMQSIAKRHGIDENINKEAMEMMSLAVRERLACILESLKTVASVRVGAEKDQWGRVETGLNVREKLQRAREDEERTLQVAAEMRVKRRKEQREAEAKRLAGEAAKNDKSAKDASAAAEXERKEKLALEKKKKESSSQRDALSGLVRDFDRRRRRSA--KPLAPLKPL--------GLKPLGS-------------------------------LDRHKELGPLVKLGRSNTTVPRGLG----EDPSTPHVELNVTLRDCLFLFESERNTKKGSLLYKWYTRL 952
            Q+  I+QEQVIVGHFCR AIKTL K+MEG P     E  L+EHIK  W+QWV+G I R +LL+SV+ FV+ S P A  +D+I+EFK WYE E                        Q   + V +   +PLH                PG  A      P T+P  +                HI K E Q P   +T G++I+ K      VP+R  +S N   VG S    G+    R + G ++ RP                  ST+P     +     + +        PK    ++GGV   AGK+V G K LL NK         A  TKPK PR+ P K+A    XXXXXXXXXXXXXXX             +       Q  SLP                  KR  D+   S   +++KK K   K  KG + ++K   A   P ++   RP   +P +   +KG   P   M +G     A    G ++ + G        +K +R +D  E+NLV++VVD++DE  KL  DA      + E++ Y+P M++SGP LR KMQ  AKR+ + ENI+K+AME++SLAV+ERL  +LESLK +A VR+ A K+ W     G NV EKL+  REDEER+L VAAE+RVKR+KEQ E EAK+LAGEA               X  KEK+ALEKK+KE+SSQRDALSGLV   D+RR++ A  K LA L PL        G +  GS                               L++ K L PLV LG   T+   G      +D   P  +L +TLRDC+FL ESE+NT+K S +YKWY RL
Sbjct:  109 QAAKISQEQVIVGHFCRFAIKTLTKVMEGSPLKQTAEVSLKEHIKKAWAQWVRGHIPRQKLLESVARFVRDSCPQAFGIDLIREFKEWYESEFERQKAQSGRGERKVPQQQFQHVGQQQRRQVVQNKQIPLHIHQMKQQQARSAALQPPGANAKMQYSMPGTVPGRAAVGSKASGKEAQLINPHIVKKEAQLPG--KTGGKSISRK-----TVPSRKTSSPNTPKVGASRAAPGKAPGVRSIGGKSILRPP-----------------STLPAAHVALKGPTATNV--------PK--VSVMGGV---AGKAVTGSKGLLANKLPAGLVHKVAPGTKPKGPRKAPVKNAAKTSXXXXXXXXXXXXXXXK-----------TISKGSVVRQKPSLPVISGSAGAGSAAVAPGSIKRPFDAGSGSPTGSSMKKPKXXXKASKGPTNRRK---AGPFPSSTDPNRPTKPQPARIDTAKGRTGPGTNMGSGGGSALATGKGGSSNSAPGGTGPGTQVRKAKRVDD--ELNLVNDVVDLDDEVDKLGEDAGVVNTEVIEIIDYDPGMLLSGPALRTKMQVTAKRYALSENISKDAMEIVSLAVQERLRNLLESLKGIARVRIEANKESWNTEYFGQNVHEKLELMREDEERSLTVAAELRVKRKKEQEEREAKKLAGEAXXXXXXXXXXXXXXXXXXKEKIALEKKRKENSSQRDALSGLVAGIDKRRKKPATGKGLAGLAPLLPPITKSGGSRTSGSSLPPIPKLVSSAGGDSMSNKSVGTNGKKIDQLEKLKALCPLVSLGGPRTSSMPGTEPSAKKDVPKPQPKLPLTLRDCIFLMESEQNTRKSSHIYKWYARL 908          
BLAST of Gcaud7640.t1 vs. uniprot
Match: R7QKK4_CHOCR (TAF4 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKK4_CHOCR)

HSP 1 Score: 135 bits (339), Expect = 1.500e-28
Identity = 119/323 (36.84%), Postives = 180/323 (55.73%), Query Frame = 0
Query:  671 LVDNVVDIEDEEVKLNVDANGRRQAIEEVVQYNPDMIVSGPILRKKMQSIAKRHGIDENINKEAMEMMSLAVRERLACILESLKTVASVRVGAEKDQWGRVETGLNVREKLQRAREDEERTLQVAAEMRVKRRKEQREAEAKRLA----GEAAKNDKSAKDASAAAEXERKEKLALEKKKKESSSQRDALSGLVRDFDRRRRR--------SAKPLAPL-KPLG--------LKPLGS--------------LDR--HKELGPLVKLGRSNTT----VPRGLGEDPSTPHVELNVTLRDCLFLFESERNTKKGSLLYKWYTRL 952
            L+ NVVD++ EE  L  D         E V YN  ++++   L K++++ A+R+ + E+++++AME++SLAV ERL  ILESLK  +SVRV A+KD W        VREKL R  E+EER+L   A++R+K++KE  + EA R++    GE  +NDK+ +    A++  RK ++A EK  + S++ + ALSG++    + RR+        S+K L PL K  G        L PL +              LDR   K  G L+K+G   TT    +P+G+         +  +TL+DCLFL ESE+ T++   LYKWY RL
Sbjct:  707 LLGNVVDLDYEESFLAHDEKTAGDGDMEAVGYNDGLLLTANALGKRIKAAARRNHLKESVSRDAMEIISLAVCERLKSILESLKVASSVRVDADKDLWTTAVPDETVREKLGRLFEEEERSLDEKAKLRLKKKKELADIEAMRVSKMVIGE--ENDKTPR--LVASKAGRKARIAREKSLETSNNHKKALSGVLAGIQKMRRKANFEKPLGSSKALLPLIKGSGKLQNITSILPPLPTRNVSGGIIQRRTDELDRTDRKHEG-LLKMGGPETTNRSHLPKGIVAVRRKKR-KYGLTLKDCLFLMESEQTTRRSYALYKWYGRL 1023          
BLAST of Gcaud7640.t1 vs. uniprot
Match: R7Q6F3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6F3_CHOCR)

HSP 1 Score: 114 bits (284), Expect = 3.730e-25
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0
Query:  219 QSRSITQEQVIVGHFCRHAIKTLKKIMEGLPYAAQGEARLREHIKAVWSQWVKGMITRPQLLQSVSNFVKQSAPAAKDVDVIKEFKAWYEHE 310
            Q+  I+QEQVIVGHFCR AIKTL ++MEG P     E  L+EHIK  W+QWV+G I R +LL+SV+ FV+ S P A  +D+I+EFK WYE E
Sbjct:   40 QAAKISQEQVIVGHFCRFAIKTLTEVMEGSPLKQTAEVSLKEHIKKAWAQWVRGHIPRQKLLESVARFVRDSCPQAFGIDLIREFKEWYESE 131          
BLAST of Gcaud7640.t1 vs. uniprot
Match: R7QTB8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTB8_CHOCR)

HSP 1 Score: 115 bits (287), Expect = 4.910e-23
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 0
Query:  219 QSRSITQEQVIVGHFCRHAIKTLKKIMEGLPYAAQGEARLREHIKAVWSQWVKGMITRPQLLQSVSNFVKQSAPAAKDVDVIKEFKAWYEHE 310
            Q+  I+QE+VIVGHFCR AIKTL K+MEG P     E  LREHIK  W+QWV+G I R +LL+SV+ FV+ S P A  +D+I+EFK WYE E
Sbjct:  363 QAARISQERVIVGHFCRFAIKTLNKVMEGSPLKQTAEVSLREHIKKAWAQWVRGHIPRQKLLESVARFVRDSCPQAFGIDLIREFKEWYESE 454          
The following BLAST results are available for this feature:
BLAST of Gcaud7640.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IXL1_9FLOR1.140e-26350.25TAF4 domain-containing protein n=2 Tax=Gracilariop... [more]
R7Q6Z9_CHOCR3.030e-9437.05TAF4 domain-containing protein n=1 Tax=Chondrus cr... [more]
R7QKK4_CHOCR1.500e-2836.84TAF4 domain-containing protein n=1 Tax=Chondrus cr... [more]
R7Q6F3_CHOCR3.730e-2557.61Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QTB8_CHOCR4.910e-2358.70Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 825..852
NoneNo IPR availableCOILSCoilCoilcoord: 778..798
NoneNo IPR availableCOILSCoilCoilcoord: 137..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 552..584
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 314..363
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 317..363
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 468..662
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 801..863
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 640..656
IPR007900Transcription initiation factor TFIID component TAF4, C-terminalPFAMPF05236TAF4coord: 676..947
e-value: 2.7E-18
score: 66.7
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 708..755
e-value: 1.8E-6
score: 29.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_240_length_34680_cov_4.545549contigNODE_240_length_34680_cov_4.545549:10596..13526 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7640.t1Gcaud7640.t1Gracilaria caudata M_176_S67 malemRNANODE_240_length_34680_cov_4.545549 10596..13526 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7640.t1 ID=Gcaud7640.t1|Name=Gcaud7640.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=957bp
METNKNLDELLAAIGDGSANPTNGAPRVKQASNTARNAAATFSQPLQMPI
PPVTQARSRPASSNMGASGAQPNVNGHYNQLLSLLQGHNAPLVNQQIPQQ
HNAPVQRLSASNQLTFAQTSRPTPSQALDPKALAALKRQHQIQAAQAKQR
RESLANVPTINRSAPPVPIPRIGTQGFPAGMPSVVNVPPNMPTTTKQDPQ
HSSSLSSQQRPNSAAQQAQSRSITQEQVIVGHFCRHAIKTLKKIMEGLPY
AAQGEARLREHIKAVWSQWVKGMITRPQLLQSVSNFVKQSAPAAKDVDVI
KEFKAWYEHEYELQKQRSRQTQQQQPQPTQVRHPQPAGQSVNRANNLPLH
PGNQAVRTNMAPQTLPAASTHIKVEQQRPNVPRTAGQTIAAKPEPMRVVP
TRTPTSKNAVGGSGENVRGRQLAGSTMTRPQAVPVHASSVNAPNIMMHST
IPPQQRTVNQVVVSKIADGRPGSSPKGGQKIVGGVPQQAGKSVGGKSLLH
NKAAAQTKPKQPRRPPQKSAAKTVVRTSPKGAGKGKSPVAYPFHPGGHPG
GNVQINYTTHQLQSLPAKRVLDSNVSSSPPNAVKKIKTVSKPPKGSSAKK
KPPGAVGNPVASKGARPPVQRPEQKSKGAKRPMATGALPPSGPTSMSLGN
PNADAAQKKNRRQEDLKEINLVDNVVDIEDEEVKLNVDANGRRQAIEEVV
QYNPDMIVSGPILRKKMQSIAKRHGIDENINKEAMEMMSLAVRERLACIL
ESLKTVASVRVGAEKDQWGRVETGLNVREKLQRAREDEERTLQVAAEMRV
KRRKEQREAEAKRLAGEAAKNDKSAKDASAAAEAERKEKLALEKKKKESS
SQRDALSGLVRDFDRRRRRSAKPLAPLKPLGLKPLGSLDRHKELGPLVKL
GRSNTTVPRGLGEDPSTPHVELNVTLRDCLFLFESERNTKKGSLLYKWYT
RLPNGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007900TAF4_C
IPR009072Histone-fold